Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00823 and MIT1002_00824 overlap by 1 nucleotides MIT1002_00824 and MIT1002_00825 are separated by 84 nucleotides MIT1002_00825 and MIT1002_00826 are separated by 13 nucleotides MIT1002_00826 and MIT1002_00827 are separated by 30 nucleotides
MIT1002_00823: MIT1002_00823 - Phosphocarrier protein NPr, at 907,788 to 908,060
_00823
MIT1002_00824: MIT1002_00824 - glmZ(sRNA)-inactivating NTPase, at 908,060 to 908,905
_00824
MIT1002_00825: MIT1002_00825 - Nitrogen regulatory protein, at 908,990 to 909,433
_00825
MIT1002_00826: MIT1002_00826 - Ribosome hibernation promoting factor, at 909,447 to 909,734
_00826
MIT1002_00827: MIT1002_00827 - RNA polymerase sigma-54 factor 2, at 909,765 to 911,246
_00827
Position (kb) 908
909
910 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 907.992 kb on - strand, within MIT1002_00823 at 908.028 kb on + strand, within MIT1002_00823 at 908.115 kb on + strand at 908.123 kb on - strand at 908.134 kb on - strand at 908.150 kb on + strand, within MIT1002_00824 at 908.150 kb on + strand, within MIT1002_00824 at 908.158 kb on - strand, within MIT1002_00824 at 908.158 kb on - strand, within MIT1002_00824 at 908.158 kb on - strand, within MIT1002_00824 at 908.163 kb on + strand, within MIT1002_00824 at 908.166 kb on - strand, within MIT1002_00824 at 908.212 kb on - strand, within MIT1002_00824 at 908.218 kb on + strand, within MIT1002_00824 at 908.266 kb on - strand, within MIT1002_00824 at 908.268 kb on + strand, within MIT1002_00824 at 908.277 kb on + strand, within MIT1002_00824 at 908.301 kb on + strand, within MIT1002_00824 at 908.449 kb on + strand, within MIT1002_00824 at 908.457 kb on - strand, within MIT1002_00824 at 908.474 kb on - strand, within MIT1002_00824 at 908.499 kb on - strand, within MIT1002_00824 at 908.507 kb on + strand, within MIT1002_00824 at 908.507 kb on + strand, within MIT1002_00824 at 908.507 kb on + strand, within MIT1002_00824 at 908.515 kb on - strand, within MIT1002_00824 at 908.596 kb on + strand, within MIT1002_00824 at 908.604 kb on - strand, within MIT1002_00824 at 908.630 kb on - strand, within MIT1002_00824 at 908.630 kb on - strand, within MIT1002_00824 at 908.735 kb on + strand, within MIT1002_00824 at 908.745 kb on - strand, within MIT1002_00824 at 908.745 kb on - strand, within MIT1002_00824 at 908.775 kb on + strand, within MIT1002_00824 at 908.776 kb on + strand, within MIT1002_00824 at 908.776 kb on - strand, within MIT1002_00824 at 908.907 kb on - strand at 908.941 kb on + strand at 908.979 kb on - strand at 909.099 kb on + strand, within MIT1002_00825 at 909.104 kb on + strand, within MIT1002_00825 at 909.104 kb on + strand, within MIT1002_00825 at 909.188 kb on + strand, within MIT1002_00825 at 909.196 kb on - strand, within MIT1002_00825 at 909.196 kb on - strand, within MIT1002_00825 at 909.196 kb on - strand, within MIT1002_00825 at 909.262 kb on - strand, within MIT1002_00825 at 909.277 kb on - strand, within MIT1002_00825 at 909.311 kb on - strand, within MIT1002_00825 at 909.411 kb on - strand at 909.417 kb on - strand at 909.515 kb on - strand, within MIT1002_00826 at 909.528 kb on - strand, within MIT1002_00826 at 909.562 kb on - strand, within MIT1002_00826 at 909.572 kb on - strand, within MIT1002_00826 at 909.708 kb on + strand at 909.842 kb on + strand at 909.961 kb on + strand, within MIT1002_00827 at 909.961 kb on + strand, within MIT1002_00827
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 907,992 - MIT1002_00823 0.75 +0.2 908,028 + MIT1002_00823 0.88 +0.1 908,115 + -2.1 908,123 - +1.9 908,134 - -0.1 908,150 + MIT1002_00824 0.11 -1.4 908,150 + MIT1002_00824 0.11 -2.2 908,158 - MIT1002_00824 0.12 +0.0 908,158 - MIT1002_00824 0.12 +0.9 908,158 - MIT1002_00824 0.12 -0.0 908,163 + MIT1002_00824 0.12 +0.7 908,166 - MIT1002_00824 0.13 +0.6 908,212 - MIT1002_00824 0.18 -1.1 908,218 + MIT1002_00824 0.19 -1.0 908,266 - MIT1002_00824 0.24 -1.9 908,268 + MIT1002_00824 0.25 +0.7 908,277 + MIT1002_00824 0.26 -0.6 908,301 + MIT1002_00824 0.28 +0.9 908,449 + MIT1002_00824 0.46 -2.6 908,457 - MIT1002_00824 0.47 +1.2 908,474 - MIT1002_00824 0.49 +1.7 908,499 - MIT1002_00824 0.52 +0.5 908,507 + MIT1002_00824 0.53 +0.5 908,507 + MIT1002_00824 0.53 -1.8 908,507 + MIT1002_00824 0.53 +0.6 908,515 - MIT1002_00824 0.54 -0.5 908,596 + MIT1002_00824 0.63 -0.7 908,604 - MIT1002_00824 0.64 +0.6 908,630 - MIT1002_00824 0.67 -0.7 908,630 - MIT1002_00824 0.67 -3.6 908,735 + MIT1002_00824 0.80 +0.4 908,745 - MIT1002_00824 0.81 +0.8 908,745 - MIT1002_00824 0.81 -0.7 908,775 + MIT1002_00824 0.85 -0.3 908,776 + MIT1002_00824 0.85 -1.8 908,776 - MIT1002_00824 0.85 +1.2 908,907 - +1.2 908,941 + -1.7 908,979 - -3.2 909,099 + MIT1002_00825 0.25 -2.0 909,104 + MIT1002_00825 0.26 -1.1 909,104 + MIT1002_00825 0.26 -3.4 909,188 + MIT1002_00825 0.45 -0.1 909,196 - MIT1002_00825 0.46 -1.5 909,196 - MIT1002_00825 0.46 -0.1 909,196 - MIT1002_00825 0.46 +1.1 909,262 - MIT1002_00825 0.61 -0.9 909,277 - MIT1002_00825 0.65 -3.1 909,311 - MIT1002_00825 0.72 -0.9 909,411 - -4.1 909,417 - -2.1 909,515 - MIT1002_00826 0.24 -3.2 909,528 - MIT1002_00826 0.28 -3.1 909,562 - MIT1002_00826 0.40 -3.9 909,572 - MIT1002_00826 0.43 -2.8 909,708 + -4.2 909,842 + -1.1 909,961 + MIT1002_00827 0.13 -0.4 909,961 + MIT1002_00827 0.13 -2.4
Or see this region's nucleotide sequence