Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00790 and MIT1002_00791 are separated by 251 nucleotides MIT1002_00791 and MIT1002_00792 are separated by 27 nucleotides MIT1002_00792 and MIT1002_00793 are separated by 101 nucleotides
MIT1002_00790: MIT1002_00790 - Recombination protein O, at 875,468 to 876,181
_00790
MIT1002_00791: MIT1002_00791 - Pyridoxine 5'-phosphate synthase, at 876,433 to 877,170
_00791
MIT1002_00792: MIT1002_00792 - Holo-[acyl-carrier-protein] synthase, at 877,198 to 877,578
_00792
MIT1002_00793: MIT1002_00793 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 877,680 to 879,122
_00793
Position (kb) 876
877
878 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 875.454 kb on - strand at 875.460 kb on + strand at 875.490 kb on + strand at 875.490 kb on + strand at 875.490 kb on + strand at 875.498 kb on - strand at 875.498 kb on - strand at 875.498 kb on - strand at 875.507 kb on + strand at 875.511 kb on + strand at 875.517 kb on - strand at 875.617 kb on + strand, within MIT1002_00790 at 875.699 kb on - strand, within MIT1002_00790 at 875.703 kb on + strand, within MIT1002_00790 at 875.711 kb on - strand, within MIT1002_00790 at 875.711 kb on - strand, within MIT1002_00790 at 875.723 kb on + strand, within MIT1002_00790 at 875.723 kb on + strand, within MIT1002_00790 at 875.728 kb on + strand, within MIT1002_00790 at 875.731 kb on - strand, within MIT1002_00790 at 875.742 kb on + strand, within MIT1002_00790 at 875.787 kb on + strand, within MIT1002_00790 at 875.804 kb on + strand, within MIT1002_00790 at 875.844 kb on + strand, within MIT1002_00790 at 875.844 kb on + strand, within MIT1002_00790 at 875.852 kb on - strand, within MIT1002_00790 at 875.852 kb on - strand, within MIT1002_00790 at 875.864 kb on - strand, within MIT1002_00790 at 875.864 kb on - strand, within MIT1002_00790 at 875.902 kb on + strand, within MIT1002_00790 at 875.937 kb on - strand, within MIT1002_00790 at 875.941 kb on + strand, within MIT1002_00790 at 875.972 kb on + strand, within MIT1002_00790 at 876.020 kb on + strand, within MIT1002_00790 at 876.069 kb on - strand, within MIT1002_00790 at 876.074 kb on - strand, within MIT1002_00790 at 876.115 kb on + strand at 876.123 kb on - strand at 876.131 kb on + strand at 876.160 kb on + strand at 876.354 kb on + strand at 877.186 kb on + strand at 877.186 kb on + strand at 877.568 kb on + strand at 877.568 kb on + strand at 877.587 kb on + strand at 877.595 kb on - strand at 877.666 kb on - strand at 877.679 kb on - strand at 877.689 kb on - strand at 877.689 kb on - strand at 877.711 kb on + strand at 877.711 kb on + strand at 877.719 kb on - strand at 877.763 kb on + strand at 877.763 kb on + strand at 877.763 kb on - strand at 877.771 kb on - strand at 877.771 kb on - strand at 877.831 kb on - strand, within MIT1002_00793 at 877.853 kb on - strand, within MIT1002_00793 at 877.866 kb on + strand, within MIT1002_00793 at 877.872 kb on + strand, within MIT1002_00793 at 877.874 kb on - strand, within MIT1002_00793 at 877.935 kb on + strand, within MIT1002_00793 at 878.057 kb on + strand, within MIT1002_00793 at 878.064 kb on - strand, within MIT1002_00793 at 878.068 kb on + strand, within MIT1002_00793 at 878.074 kb on + strand, within MIT1002_00793 at 878.081 kb on - strand, within MIT1002_00793 at 878.084 kb on + strand, within MIT1002_00793 at 878.089 kb on + strand, within MIT1002_00793 at 878.095 kb on + strand, within MIT1002_00793 at 878.095 kb on - strand, within MIT1002_00793 at 878.097 kb on + strand, within MIT1002_00793 at 878.131 kb on + strand, within MIT1002_00793 at 878.151 kb on + strand, within MIT1002_00793 at 878.155 kb on + strand, within MIT1002_00793
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 875,454 - -0.4 875,460 + -2.0 875,490 + -0.4 875,490 + +1.9 875,490 + +0.7 875,498 - -3.2 875,498 - -0.1 875,498 - -1.3 875,507 + +0.0 875,511 + -0.9 875,517 - +0.2 875,617 + MIT1002_00790 0.21 -1.7 875,699 - MIT1002_00790 0.32 +2.0 875,703 + MIT1002_00790 0.33 +0.4 875,711 - MIT1002_00790 0.34 -0.1 875,711 - MIT1002_00790 0.34 +0.2 875,723 + MIT1002_00790 0.36 +0.2 875,723 + MIT1002_00790 0.36 -0.7 875,728 + MIT1002_00790 0.36 +0.2 875,731 - MIT1002_00790 0.37 -0.1 875,742 + MIT1002_00790 0.38 -1.8 875,787 + MIT1002_00790 0.45 -1.8 875,804 + MIT1002_00790 0.47 +1.5 875,844 + MIT1002_00790 0.53 -1.2 875,844 + MIT1002_00790 0.53 +1.4 875,852 - MIT1002_00790 0.54 -1.5 875,852 - MIT1002_00790 0.54 -0.6 875,864 - MIT1002_00790 0.55 -3.3 875,864 - MIT1002_00790 0.55 -0.5 875,902 + MIT1002_00790 0.61 -2.7 875,937 - MIT1002_00790 0.66 +1.8 875,941 + MIT1002_00790 0.66 -1.3 875,972 + MIT1002_00790 0.71 -0.1 876,020 + MIT1002_00790 0.77 +1.2 876,069 - MIT1002_00790 0.84 -0.1 876,074 - MIT1002_00790 0.85 -2.1 876,115 + +0.5 876,123 - -1.6 876,131 + -2.0 876,160 + +0.8 876,354 + -3.3 877,186 + -2.3 877,186 + -1.6 877,568 + +2.0 877,568 + -0.4 877,587 + +1.9 877,595 - +1.5 877,666 - +1.4 877,679 - -2.3 877,689 - +2.9 877,689 - -2.7 877,711 + +1.1 877,711 + -1.1 877,719 - -1.1 877,763 + -1.9 877,763 + +1.4 877,763 - +0.9 877,771 - +0.2 877,771 - -1.1 877,831 - MIT1002_00793 0.10 -3.9 877,853 - MIT1002_00793 0.12 +0.3 877,866 + MIT1002_00793 0.13 -0.1 877,872 + MIT1002_00793 0.13 -3.7 877,874 - MIT1002_00793 0.13 +0.1 877,935 + MIT1002_00793 0.18 +0.1 878,057 + MIT1002_00793 0.26 -0.1 878,064 - MIT1002_00793 0.27 +1.2 878,068 + MIT1002_00793 0.27 +1.8 878,074 + MIT1002_00793 0.27 +1.9 878,081 - MIT1002_00793 0.28 -0.1 878,084 + MIT1002_00793 0.28 +0.4 878,089 + MIT1002_00793 0.28 +0.7 878,095 + MIT1002_00793 0.29 +0.5 878,095 - MIT1002_00793 0.29 -2.3 878,097 + MIT1002_00793 0.29 -0.1 878,131 + MIT1002_00793 0.31 -0.7 878,151 + MIT1002_00793 0.33 +0.8 878,155 + MIT1002_00793 0.33 +0.1
Or see this region's nucleotide sequence