Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00768 and MIT1002_00769 are separated by 104 nucleotides MIT1002_00769 and MIT1002_00770 are separated by 250 nucleotides
MIT1002_00768: MIT1002_00768 - Aconitate hydratase 2, at 846,312 to 849,122
_00768
MIT1002_00769: MIT1002_00769 - Transposase, at 849,227 to 850,423
_00769
MIT1002_00770: MIT1002_00770 - Signal transduction histidine-protein kinase BarA, at 850,674 to 852,386
_00770
Position (kb) 849
850
851 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 848.422 kb on - strand, within MIT1002_00768 at 848.432 kb on - strand, within MIT1002_00768 at 848.501 kb on + strand, within MIT1002_00768 at 848.765 kb on + strand, within MIT1002_00768 at 848.779 kb on - strand, within MIT1002_00768 at 848.812 kb on + strand, within MIT1002_00768 at 848.820 kb on - strand, within MIT1002_00768 at 848.908 kb on + strand at 848.933 kb on + strand at 849.004 kb on + strand at 849.017 kb on - strand at 849.033 kb on - strand at 850.558 kb on + strand at 850.614 kb on + strand at 850.614 kb on + strand at 850.624 kb on - strand at 850.669 kb on + strand at 850.677 kb on - strand at 850.685 kb on + strand at 850.687 kb on + strand at 850.835 kb on + strand at 850.835 kb on + strand at 850.835 kb on + strand at 850.843 kb on - strand at 850.843 kb on - strand at 850.843 kb on - strand at 850.843 kb on - strand at 850.887 kb on - strand, within MIT1002_00770 at 850.911 kb on - strand, within MIT1002_00770 at 850.974 kb on - strand, within MIT1002_00770 at 851.003 kb on + strand, within MIT1002_00770 at 851.011 kb on - strand, within MIT1002_00770 at 851.033 kb on + strand, within MIT1002_00770 at 851.040 kb on + strand, within MIT1002_00770 at 851.041 kb on - strand, within MIT1002_00770 at 851.079 kb on + strand, within MIT1002_00770 at 851.098 kb on + strand, within MIT1002_00770 at 851.104 kb on + strand, within MIT1002_00770 at 851.106 kb on - strand, within MIT1002_00770 at 851.119 kb on + strand, within MIT1002_00770 at 851.119 kb on + strand, within MIT1002_00770 at 851.127 kb on - strand, within MIT1002_00770 at 851.127 kb on - strand, within MIT1002_00770 at 851.127 kb on - strand, within MIT1002_00770 at 851.127 kb on - strand, within MIT1002_00770 at 851.148 kb on + strand, within MIT1002_00770 at 851.170 kb on + strand, within MIT1002_00770 at 851.178 kb on - strand, within MIT1002_00770 at 851.202 kb on - strand, within MIT1002_00770 at 851.286 kb on + strand, within MIT1002_00770 at 851.294 kb on - strand, within MIT1002_00770 at 851.322 kb on - strand, within MIT1002_00770 at 851.322 kb on - strand, within MIT1002_00770 at 851.344 kb on + strand, within MIT1002_00770 at 851.344 kb on + strand, within MIT1002_00770 at 851.344 kb on + strand, within MIT1002_00770 at 851.351 kb on + strand, within MIT1002_00770 at 851.351 kb on + strand, within MIT1002_00770 at 851.352 kb on - strand, within MIT1002_00770 at 851.359 kb on - strand, within MIT1002_00770 at 851.359 kb on - strand, within MIT1002_00770 at 851.359 kb on - strand, within MIT1002_00770 at 851.409 kb on + strand, within MIT1002_00770 at 851.418 kb on - strand, within MIT1002_00770
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 848,422 - MIT1002_00768 0.75 -1.9 848,432 - MIT1002_00768 0.75 -0.7 848,501 + MIT1002_00768 0.78 +0.9 848,765 + MIT1002_00768 0.87 -2.1 848,779 - MIT1002_00768 0.88 -4.1 848,812 + MIT1002_00768 0.89 +0.8 848,820 - MIT1002_00768 0.89 -2.8 848,908 + -2.2 848,933 + +0.4 849,004 + +1.2 849,017 - -1.2 849,033 - -2.9 850,558 + -2.3 850,614 + +0.4 850,614 + -2.0 850,624 - -0.1 850,669 + +1.7 850,677 - -1.2 850,685 + -0.1 850,687 + +0.8 850,835 + -0.7 850,835 + +0.8 850,835 + +0.3 850,843 - -1.8 850,843 - +0.2 850,843 - +0.4 850,843 - -0.8 850,887 - MIT1002_00770 0.12 +0.9 850,911 - MIT1002_00770 0.14 +0.1 850,974 - MIT1002_00770 0.18 -0.9 851,003 + MIT1002_00770 0.19 -1.1 851,011 - MIT1002_00770 0.20 -2.2 851,033 + MIT1002_00770 0.21 -1.2 851,040 + MIT1002_00770 0.21 -0.2 851,041 - MIT1002_00770 0.21 +1.1 851,079 + MIT1002_00770 0.24 +2.4 851,098 + MIT1002_00770 0.25 -1.1 851,104 + MIT1002_00770 0.25 +1.9 851,106 - MIT1002_00770 0.25 -1.1 851,119 + MIT1002_00770 0.26 -0.2 851,119 + MIT1002_00770 0.26 +0.2 851,127 - MIT1002_00770 0.26 -0.0 851,127 - MIT1002_00770 0.26 +0.8 851,127 - MIT1002_00770 0.26 -2.1 851,127 - MIT1002_00770 0.26 -1.6 851,148 + MIT1002_00770 0.28 -1.6 851,170 + MIT1002_00770 0.29 +0.1 851,178 - MIT1002_00770 0.29 +1.2 851,202 - MIT1002_00770 0.31 +1.7 851,286 + MIT1002_00770 0.36 +0.4 851,294 - MIT1002_00770 0.36 -2.7 851,322 - MIT1002_00770 0.38 -0.1 851,322 - MIT1002_00770 0.38 -0.1 851,344 + MIT1002_00770 0.39 -2.0 851,344 + MIT1002_00770 0.39 -1.1 851,344 + MIT1002_00770 0.39 +2.1 851,351 + MIT1002_00770 0.40 -0.4 851,351 + MIT1002_00770 0.40 +0.5 851,352 - MIT1002_00770 0.40 -0.7 851,359 - MIT1002_00770 0.40 +0.7 851,359 - MIT1002_00770 0.40 +1.7 851,359 - MIT1002_00770 0.40 +3.1 851,409 + MIT1002_00770 0.43 +1.2 851,418 - MIT1002_00770 0.43 -1.4
Or see this region's nucleotide sequence