Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00750

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00749 and MIT1002_00750 are separated by 117 nucleotidesMIT1002_00750 and MIT1002_00751 are separated by 308 nucleotides MIT1002_00749: MIT1002_00749 - Recombination-associated protein RdgC, at 821,123 to 822,034 _00749 MIT1002_00750: MIT1002_00750 - Sensor kinase protein RcsC, at 822,152 to 823,828 _00750 MIT1002_00751: MIT1002_00751 - Phosphate regulon transcriptional regulatory protein PhoB, at 824,137 to 824,826 _00751 Position (kb) 822 823 824Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 821.171 kb on - strandat 821.191 kb on + strandat 821.212 kb on - strandat 821.416 kb on + strand, within MIT1002_00749at 821.416 kb on + strand, within MIT1002_00749at 821.424 kb on - strand, within MIT1002_00749at 821.424 kb on - strand, within MIT1002_00749at 821.424 kb on - strand, within MIT1002_00749at 821.457 kb on - strand, within MIT1002_00749at 821.467 kb on + strand, within MIT1002_00749at 821.467 kb on + strand, within MIT1002_00749at 821.467 kb on + strand, within MIT1002_00749at 821.467 kb on + strand, within MIT1002_00749at 821.475 kb on - strand, within MIT1002_00749at 821.475 kb on - strand, within MIT1002_00749at 821.475 kb on - strand, within MIT1002_00749at 821.477 kb on + strand, within MIT1002_00749at 821.491 kb on + strand, within MIT1002_00749at 821.499 kb on - strand, within MIT1002_00749at 821.499 kb on - strand, within MIT1002_00749at 821.593 kb on - strand, within MIT1002_00749at 821.612 kb on + strand, within MIT1002_00749at 821.663 kb on - strand, within MIT1002_00749at 821.790 kb on - strand, within MIT1002_00749at 821.794 kb on + strand, within MIT1002_00749at 821.797 kb on - strand, within MIT1002_00749at 821.825 kb on + strand, within MIT1002_00749at 821.832 kb on - strand, within MIT1002_00749at 821.914 kb on - strand, within MIT1002_00749at 822.044 kb on - strandat 822.087 kb on - strandat 822.192 kb on - strandat 822.202 kb on + strandat 822.209 kb on - strandat 822.217 kb on + strandat 822.217 kb on + strandat 822.217 kb on + strandat 822.225 kb on - strandat 822.225 kb on - strandat 822.225 kb on - strandat 822.225 kb on - strandat 822.225 kb on - strandat 822.225 kb on - strandat 822.246 kb on - strandat 822.283 kb on - strandat 822.309 kb on + strandat 822.328 kb on + strand, within MIT1002_00750at 822.328 kb on + strand, within MIT1002_00750at 822.391 kb on + strand, within MIT1002_00750at 822.445 kb on - strand, within MIT1002_00750at 822.492 kb on + strand, within MIT1002_00750at 822.500 kb on - strand, within MIT1002_00750at 822.512 kb on - strand, within MIT1002_00750at 822.547 kb on + strand, within MIT1002_00750at 822.555 kb on - strand, within MIT1002_00750at 822.628 kb on + strand, within MIT1002_00750at 822.628 kb on + strand, within MIT1002_00750at 822.628 kb on + strand, within MIT1002_00750at 822.631 kb on - strand, within MIT1002_00750at 822.636 kb on - strand, within MIT1002_00750at 822.636 kb on - strand, within MIT1002_00750at 822.636 kb on - strand, within MIT1002_00750at 822.636 kb on - strand, within MIT1002_00750at 822.661 kb on + strand, within MIT1002_00750at 822.669 kb on - strand, within MIT1002_00750at 822.714 kb on - strand, within MIT1002_00750at 822.743 kb on + strand, within MIT1002_00750at 822.751 kb on - strand, within MIT1002_00750at 822.901 kb on - strand, within MIT1002_00750at 822.977 kb on - strand, within MIT1002_00750at 823.020 kb on - strand, within MIT1002_00750at 823.047 kb on - strand, within MIT1002_00750at 823.047 kb on - strand, within MIT1002_00750at 823.047 kb on - strand, within MIT1002_00750at 823.047 kb on - strand, within MIT1002_00750at 823.047 kb on - strand, within MIT1002_00750at 823.050 kb on + strand, within MIT1002_00750at 823.058 kb on - strand, within MIT1002_00750at 823.155 kb on + strand, within MIT1002_00750at 823.155 kb on + strand, within MIT1002_00750at 823.207 kb on - strand, within MIT1002_00750at 823.217 kb on - strand, within MIT1002_00750at 823.264 kb on + strand, within MIT1002_00750at 823.266 kb on + strand, within MIT1002_00750at 823.272 kb on - strand, within MIT1002_00750at 823.272 kb on - strand, within MIT1002_00750at 823.300 kb on + strand, within MIT1002_00750at 823.411 kb on + strand, within MIT1002_00750at 823.465 kb on + strand, within MIT1002_00750at 823.558 kb on + strand, within MIT1002_00750at 823.558 kb on + strand, within MIT1002_00750at 823.558 kb on + strand, within MIT1002_00750at 823.561 kb on - strand, within MIT1002_00750at 823.566 kb on - strand, within MIT1002_00750at 823.566 kb on - strand, within MIT1002_00750at 823.571 kb on - strand, within MIT1002_00750at 823.578 kb on - strand, within MIT1002_00750at 823.583 kb on - strand, within MIT1002_00750at 823.619 kb on + strand, within MIT1002_00750at 823.621 kb on + strand, within MIT1002_00750at 823.648 kb on + strand, within MIT1002_00750at 823.649 kb on + strand, within MIT1002_00750at 823.714 kb on - strandat 823.782 kb on + strandat 823.792 kb on + strandat 823.800 kb on - strandat 823.805 kb on - strandat 823.841 kb on + strandat 823.841 kb on + strandat 823.849 kb on - strandat 823.849 kb on - strandat 823.849 kb on - strandat 823.849 kb on - strandat 823.861 kb on + strandat 823.866 kb on + strandat 823.866 kb on + strandat 823.874 kb on - strandat 823.874 kb on - strandat 823.874 kb on - strandat 823.967 kb on + strandat 824.147 kb on - strandat 824.149 kb on - strandat 824.286 kb on - strand, within MIT1002_00751at 824.326 kb on - strand, within MIT1002_00751at 824.326 kb on - strand, within MIT1002_00751at 824.336 kb on + strand, within MIT1002_00751at 824.660 kb on + strand, within MIT1002_00751

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
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821,171 - -0.4
821,191 + -1.3
821,212 - +0.8
821,416 + MIT1002_00749 0.32 -1.4
821,416 + MIT1002_00749 0.32 -1.1
821,424 - MIT1002_00749 0.33 -0.3
821,424 - MIT1002_00749 0.33 -0.1
821,424 - MIT1002_00749 0.33 +0.1
821,457 - MIT1002_00749 0.37 -1.0
821,467 + MIT1002_00749 0.38 -0.9
821,467 + MIT1002_00749 0.38 +1.5
821,467 + MIT1002_00749 0.38 +0.6
821,467 + MIT1002_00749 0.38 -1.7
821,475 - MIT1002_00749 0.39 -1.1
821,475 - MIT1002_00749 0.39 +0.2
821,475 - MIT1002_00749 0.39 -0.6
821,477 + MIT1002_00749 0.39 +1.1
821,491 + MIT1002_00749 0.40 +0.5
821,499 - MIT1002_00749 0.41 -0.3
821,499 - MIT1002_00749 0.41 -2.3
821,593 - MIT1002_00749 0.52 -2.2
821,612 + MIT1002_00749 0.54 +1.7
821,663 - MIT1002_00749 0.59 -0.5
821,790 - MIT1002_00749 0.73 -2.4
821,794 + MIT1002_00749 0.74 +0.8
821,797 - MIT1002_00749 0.74 -4.0
821,825 + MIT1002_00749 0.77 -3.4
821,832 - MIT1002_00749 0.78 -1.5
821,914 - MIT1002_00749 0.87 -1.0
822,044 - -0.3
822,087 - +1.9
822,192 - -0.8
822,202 + +0.8
822,209 - -1.5
822,217 + +1.0
822,217 + +1.2
822,217 + -3.2
822,225 - +0.5
822,225 - +0.7
822,225 - -0.0
822,225 - +0.6
822,225 - -1.1
822,225 - -0.7
822,246 - -2.5
822,283 - -4.3
822,309 + +1.6
822,328 + MIT1002_00750 0.10 -2.6
822,328 + MIT1002_00750 0.10 -1.8
822,391 + MIT1002_00750 0.14 +1.4
822,445 - MIT1002_00750 0.17 -1.0
822,492 + MIT1002_00750 0.20 +2.5
822,500 - MIT1002_00750 0.21 +1.7
822,512 - MIT1002_00750 0.21 -2.7
822,547 + MIT1002_00750 0.24 -0.9
822,555 - MIT1002_00750 0.24 -2.2
822,628 + MIT1002_00750 0.28 -0.8
822,628 + MIT1002_00750 0.28 +0.7
822,628 + MIT1002_00750 0.28 +0.0
822,631 - MIT1002_00750 0.29 -0.6
822,636 - MIT1002_00750 0.29 -1.2
822,636 - MIT1002_00750 0.29 -2.7
822,636 - MIT1002_00750 0.29 -2.3
822,636 - MIT1002_00750 0.29 +1.8
822,661 + MIT1002_00750 0.30 -1.2
822,669 - MIT1002_00750 0.31 -2.2
822,714 - MIT1002_00750 0.34 -0.6
822,743 + MIT1002_00750 0.35 +0.7
822,751 - MIT1002_00750 0.36 -2.9
822,901 - MIT1002_00750 0.45 -2.0
822,977 - MIT1002_00750 0.49 -0.8
823,020 - MIT1002_00750 0.52 +1.5
823,047 - MIT1002_00750 0.53 -1.2
823,047 - MIT1002_00750 0.53 -0.4
823,047 - MIT1002_00750 0.53 -0.4
823,047 - MIT1002_00750 0.53 -0.1
823,047 - MIT1002_00750 0.53 -0.0
823,050 + MIT1002_00750 0.54 +1.5
823,058 - MIT1002_00750 0.54 -0.3
823,155 + MIT1002_00750 0.60 -0.5
823,155 + MIT1002_00750 0.60 -1.9
823,207 - MIT1002_00750 0.63 -0.2
823,217 - MIT1002_00750 0.64 +1.1
823,264 + MIT1002_00750 0.66 -1.3
823,266 + MIT1002_00750 0.66 -0.5
823,272 - MIT1002_00750 0.67 -0.1
823,272 - MIT1002_00750 0.67 +0.1
823,300 + MIT1002_00750 0.68 +1.4
823,411 + MIT1002_00750 0.75 -4.1
823,465 + MIT1002_00750 0.78 +0.5
823,558 + MIT1002_00750 0.84 -0.9
823,558 + MIT1002_00750 0.84 -0.4
823,558 + MIT1002_00750 0.84 +0.0
823,561 - MIT1002_00750 0.84 +0.4
823,566 - MIT1002_00750 0.84 -0.1
823,566 - MIT1002_00750 0.84 -0.5
823,571 - MIT1002_00750 0.85 +3.6
823,578 - MIT1002_00750 0.85 -0.5
823,583 - MIT1002_00750 0.85 -1.8
823,619 + MIT1002_00750 0.87 -0.7
823,621 + MIT1002_00750 0.88 -4.3
823,648 + MIT1002_00750 0.89 -2.6
823,649 + MIT1002_00750 0.89 -0.3
823,714 - -0.1
823,782 + +0.1
823,792 + +2.7
823,800 - +0.1
823,805 - -1.3
823,841 + +1.0
823,841 + -2.2
823,849 - +0.8
823,849 - +1.7
823,849 - +0.1
823,849 - +0.7
823,861 + +1.2
823,866 + -0.0
823,866 + +1.4
823,874 - -2.1
823,874 - -0.2
823,874 - -4.4
823,967 + +0.0
824,147 - -0.1
824,149 - -0.1
824,286 - MIT1002_00751 0.22 +0.4
824,326 - MIT1002_00751 0.27 -1.3
824,326 - MIT1002_00751 0.27 -0.4
824,336 + MIT1002_00751 0.29 -1.7
824,660 + MIT1002_00751 0.76 -2.1

Or see this region's nucleotide sequence