Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00746 and MIT1002_00747 are separated by 126 nucleotides MIT1002_00747 and MIT1002_00748 are separated by 186 nucleotides MIT1002_00748 and MIT1002_00749 are separated by 217 nucleotides
MIT1002_00746: MIT1002_00746 - HDOD domain protein, at 818,002 to 818,838
_00746
MIT1002_00747: MIT1002_00747 - Inner membrane protein YdcO, at 818,965 to 820,155
_00747
MIT1002_00748: MIT1002_00748 - DNA-binding transcriptional repressor PuuR, at 820,342 to 820,905
_00748
MIT1002_00749: MIT1002_00749 - Recombination-associated protein RdgC, at 821,123 to 822,034
_00749
Position (kb) 818
819
820
821 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 817.976 kb on + strand at 817.984 kb on - strand at 817.994 kb on - strand at 818.011 kb on - strand at 818.011 kb on - strand at 818.061 kb on + strand at 818.087 kb on + strand, within MIT1002_00746 at 818.105 kb on + strand, within MIT1002_00746 at 818.160 kb on - strand, within MIT1002_00746 at 818.206 kb on - strand, within MIT1002_00746 at 818.376 kb on + strand, within MIT1002_00746 at 818.382 kb on + strand, within MIT1002_00746 at 818.382 kb on + strand, within MIT1002_00746 at 818.392 kb on + strand, within MIT1002_00746 at 818.400 kb on + strand, within MIT1002_00746 at 818.400 kb on + strand, within MIT1002_00746 at 818.400 kb on + strand, within MIT1002_00746 at 818.400 kb on + strand, within MIT1002_00746 at 818.408 kb on - strand, within MIT1002_00746 at 818.408 kb on - strand, within MIT1002_00746 at 818.472 kb on + strand, within MIT1002_00746 at 818.479 kb on - strand, within MIT1002_00746 at 818.510 kb on + strand, within MIT1002_00746 at 818.510 kb on + strand, within MIT1002_00746 at 818.520 kb on - strand, within MIT1002_00746 at 818.529 kb on + strand, within MIT1002_00746 at 818.601 kb on - strand, within MIT1002_00746 at 818.601 kb on - strand, within MIT1002_00746 at 818.641 kb on + strand, within MIT1002_00746 at 818.649 kb on - strand, within MIT1002_00746 at 818.650 kb on - strand, within MIT1002_00746 at 818.662 kb on + strand, within MIT1002_00746 at 818.670 kb on - strand, within MIT1002_00746 at 818.677 kb on + strand, within MIT1002_00746 at 818.718 kb on - strand, within MIT1002_00746 at 818.803 kb on - strand at 818.813 kb on - strand at 818.835 kb on - strand at 818.874 kb on - strand at 818.885 kb on + strand at 818.893 kb on - strand at 818.893 kb on - strand at 818.893 kb on - strand at 818.942 kb on - strand at 818.954 kb on + strand at 818.991 kb on - strand at 819.001 kb on + strand at 819.006 kb on + strand at 819.055 kb on + strand at 819.082 kb on - strand at 819.100 kb on - strand, within MIT1002_00747 at 819.100 kb on - strand, within MIT1002_00747 at 819.100 kb on - strand, within MIT1002_00747 at 819.116 kb on - strand, within MIT1002_00747 at 819.121 kb on + strand, within MIT1002_00747 at 819.131 kb on - strand, within MIT1002_00747 at 819.152 kb on - strand, within MIT1002_00747 at 819.185 kb on + strand, within MIT1002_00747 at 819.263 kb on + strand, within MIT1002_00747 at 819.271 kb on - strand, within MIT1002_00747 at 819.271 kb on - strand, within MIT1002_00747 at 819.302 kb on + strand, within MIT1002_00747 at 819.302 kb on + strand, within MIT1002_00747 at 819.367 kb on + strand, within MIT1002_00747 at 819.370 kb on - strand, within MIT1002_00747 at 819.375 kb on - strand, within MIT1002_00747 at 819.375 kb on - strand, within MIT1002_00747 at 819.437 kb on + strand, within MIT1002_00747 at 819.498 kb on + strand, within MIT1002_00747 at 819.506 kb on - strand, within MIT1002_00747 at 819.510 kb on + strand, within MIT1002_00747 at 819.544 kb on - strand, within MIT1002_00747 at 819.544 kb on - strand, within MIT1002_00747 at 819.546 kb on + strand, within MIT1002_00747 at 819.564 kb on + strand, within MIT1002_00747 at 819.564 kb on + strand, within MIT1002_00747 at 819.564 kb on + strand, within MIT1002_00747 at 819.569 kb on + strand, within MIT1002_00747 at 819.610 kb on - strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.651 kb on + strand, within MIT1002_00747 at 819.659 kb on - strand, within MIT1002_00747 at 819.659 kb on - strand, within MIT1002_00747 at 819.751 kb on + strand, within MIT1002_00747 at 819.825 kb on + strand, within MIT1002_00747 at 819.825 kb on + strand, within MIT1002_00747 at 819.825 kb on + strand, within MIT1002_00747 at 819.832 kb on + strand, within MIT1002_00747 at 819.832 kb on + strand, within MIT1002_00747 at 819.833 kb on - strand, within MIT1002_00747 at 819.840 kb on - strand, within MIT1002_00747 at 819.840 kb on - strand, within MIT1002_00747 at 819.840 kb on - strand, within MIT1002_00747 at 819.840 kb on - strand, within MIT1002_00747 at 819.845 kb on - strand, within MIT1002_00747 at 819.893 kb on + strand, within MIT1002_00747 at 819.935 kb on + strand, within MIT1002_00747 at 819.936 kb on + strand, within MIT1002_00747 at 819.936 kb on + strand, within MIT1002_00747 at 819.944 kb on - strand, within MIT1002_00747 at 819.980 kb on - strand, within MIT1002_00747 at 819.982 kb on - strand, within MIT1002_00747 at 819.996 kb on + strand, within MIT1002_00747 at 819.996 kb on + strand, within MIT1002_00747 at 820.093 kb on + strand at 820.106 kb on - strand at 820.124 kb on + strand at 820.127 kb on - strand at 820.129 kb on + strand at 820.339 kb on - strand at 820.382 kb on + strand at 820.382 kb on + strand at 820.387 kb on + strand at 820.390 kb on - strand at 820.421 kb on - strand, within MIT1002_00748 at 820.423 kb on - strand, within MIT1002_00748 at 820.446 kb on + strand, within MIT1002_00748 at 820.446 kb on + strand, within MIT1002_00748 at 820.454 kb on - strand, within MIT1002_00748 at 820.458 kb on + strand, within MIT1002_00748 at 820.458 kb on + strand, within MIT1002_00748 at 820.466 kb on - strand, within MIT1002_00748 at 820.502 kb on - strand, within MIT1002_00748 at 820.587 kb on + strand, within MIT1002_00748 at 820.627 kb on - strand, within MIT1002_00748 at 820.718 kb on - strand, within MIT1002_00748 at 820.727 kb on + strand, within MIT1002_00748 at 820.813 kb on + strand, within MIT1002_00748 at 820.829 kb on + strand, within MIT1002_00748 at 820.837 kb on - strand, within MIT1002_00748 at 820.839 kb on + strand, within MIT1002_00748 at 820.839 kb on + strand, within MIT1002_00748 at 820.842 kb on - strand, within MIT1002_00748 at 820.847 kb on - strand, within MIT1002_00748 at 820.943 kb on + strand at 820.987 kb on + strand at 820.995 kb on - strand at 820.995 kb on - strand at 821.049 kb on + strand at 821.057 kb on - strand at 821.084 kb on - strand at 821.084 kb on - strand at 821.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 817,976 + +0.0 817,984 - -0.1 817,994 - +0.5 818,011 - -2.3 818,011 - +1.1 818,061 + +0.5 818,087 + MIT1002_00746 0.10 -0.9 818,105 + MIT1002_00746 0.12 +1.0 818,160 - MIT1002_00746 0.19 +0.3 818,206 - MIT1002_00746 0.24 +1.4 818,376 + MIT1002_00746 0.45 +2.1 818,382 + MIT1002_00746 0.45 -1.5 818,382 + MIT1002_00746 0.45 +1.0 818,392 + MIT1002_00746 0.47 +0.5 818,400 + MIT1002_00746 0.48 -1.5 818,400 + MIT1002_00746 0.48 -0.9 818,400 + MIT1002_00746 0.48 -3.7 818,400 + MIT1002_00746 0.48 +0.2 818,408 - MIT1002_00746 0.49 -0.2 818,408 - MIT1002_00746 0.49 -2.7 818,472 + MIT1002_00746 0.56 +0.1 818,479 - MIT1002_00746 0.57 +0.5 818,510 + MIT1002_00746 0.61 +0.2 818,510 + MIT1002_00746 0.61 -0.1 818,520 - MIT1002_00746 0.62 +0.5 818,529 + MIT1002_00746 0.63 +0.6 818,601 - MIT1002_00746 0.72 -0.4 818,601 - MIT1002_00746 0.72 +3.2 818,641 + MIT1002_00746 0.76 -0.3 818,649 - MIT1002_00746 0.77 -1.1 818,650 - MIT1002_00746 0.77 +0.7 818,662 + MIT1002_00746 0.79 -0.9 818,670 - MIT1002_00746 0.80 +0.8 818,677 + MIT1002_00746 0.81 -1.2 818,718 - MIT1002_00746 0.86 -2.8 818,803 - +4.2 818,813 - +1.6 818,835 - +0.7 818,874 - +0.4 818,885 + -1.6 818,893 - +1.7 818,893 - -1.4 818,893 - +1.7 818,942 - +1.0 818,954 + -0.1 818,991 - -0.7 819,001 + -1.2 819,006 + +0.1 819,055 + -1.4 819,082 - -3.4 819,100 - MIT1002_00747 0.11 -0.1 819,100 - MIT1002_00747 0.11 -1.1 819,100 - MIT1002_00747 0.11 +1.0 819,116 - MIT1002_00747 0.13 +1.0 819,121 + MIT1002_00747 0.13 -1.6 819,131 - MIT1002_00747 0.14 -1.5 819,152 - MIT1002_00747 0.16 +0.1 819,185 + MIT1002_00747 0.18 +0.1 819,263 + MIT1002_00747 0.25 -0.0 819,271 - MIT1002_00747 0.26 -1.1 819,271 - MIT1002_00747 0.26 -1.4 819,302 + MIT1002_00747 0.28 -3.4 819,302 + MIT1002_00747 0.28 -2.3 819,367 + MIT1002_00747 0.34 +0.2 819,370 - MIT1002_00747 0.34 +1.2 819,375 - MIT1002_00747 0.34 -1.0 819,375 - MIT1002_00747 0.34 +1.6 819,437 + MIT1002_00747 0.40 -0.0 819,498 + MIT1002_00747 0.45 -0.5 819,506 - MIT1002_00747 0.45 -2.8 819,510 + MIT1002_00747 0.46 +0.7 819,544 - MIT1002_00747 0.49 +0.7 819,544 - MIT1002_00747 0.49 +0.9 819,546 + MIT1002_00747 0.49 +1.1 819,564 + MIT1002_00747 0.50 +1.3 819,564 + MIT1002_00747 0.50 +0.8 819,564 + MIT1002_00747 0.50 +0.4 819,569 + MIT1002_00747 0.51 +0.6 819,610 - MIT1002_00747 0.54 -1.8 819,651 + MIT1002_00747 0.58 +0.1 819,651 + MIT1002_00747 0.58 +0.1 819,651 + MIT1002_00747 0.58 +0.2 819,651 + MIT1002_00747 0.58 -0.9 819,651 + MIT1002_00747 0.58 -0.6 819,659 - MIT1002_00747 0.58 +0.6 819,659 - MIT1002_00747 0.58 +1.1 819,751 + MIT1002_00747 0.66 -1.0 819,825 + MIT1002_00747 0.72 -0.9 819,825 + MIT1002_00747 0.72 +0.0 819,825 + MIT1002_00747 0.72 +2.3 819,832 + MIT1002_00747 0.73 -1.1 819,832 + MIT1002_00747 0.73 +1.3 819,833 - MIT1002_00747 0.73 -0.3 819,840 - MIT1002_00747 0.73 -0.7 819,840 - MIT1002_00747 0.73 +2.0 819,840 - MIT1002_00747 0.73 -2.0 819,840 - MIT1002_00747 0.73 +0.2 819,845 - MIT1002_00747 0.74 -0.6 819,893 + MIT1002_00747 0.78 -0.2 819,935 + MIT1002_00747 0.81 +0.6 819,936 + MIT1002_00747 0.82 +3.1 819,936 + MIT1002_00747 0.82 -0.7 819,944 - MIT1002_00747 0.82 -3.5 819,980 - MIT1002_00747 0.85 +1.3 819,982 - MIT1002_00747 0.85 -1.5 819,996 + MIT1002_00747 0.87 -0.4 819,996 + MIT1002_00747 0.87 -0.4 820,093 + +2.0 820,106 - +0.2 820,124 + -0.4 820,127 - -1.1 820,129 + +1.0 820,339 - -0.3 820,382 + -4.0 820,382 + +0.3 820,387 + +0.2 820,390 - -4.4 820,421 - MIT1002_00748 0.14 +2.6 820,423 - MIT1002_00748 0.14 -3.4 820,446 + MIT1002_00748 0.18 -1.0 820,446 + MIT1002_00748 0.18 -1.3 820,454 - MIT1002_00748 0.20 +2.0 820,458 + MIT1002_00748 0.21 -2.9 820,458 + MIT1002_00748 0.21 -2.0 820,466 - MIT1002_00748 0.22 +1.1 820,502 - MIT1002_00748 0.28 +1.6 820,587 + MIT1002_00748 0.43 -2.0 820,627 - MIT1002_00748 0.51 -3.0 820,718 - MIT1002_00748 0.67 -0.5 820,727 + MIT1002_00748 0.68 -0.2 820,813 + MIT1002_00748 0.84 +0.9 820,829 + MIT1002_00748 0.86 -0.4 820,837 - MIT1002_00748 0.88 -2.3 820,839 + MIT1002_00748 0.88 +0.8 820,839 + MIT1002_00748 0.88 -0.8 820,842 - MIT1002_00748 0.89 -0.7 820,847 - MIT1002_00748 0.90 +0.1 820,943 + -0.1 820,987 + +1.6 820,995 - +1.0 820,995 - +0.5 821,049 + +0.8 821,057 - -1.5 821,084 - +3.7 821,084 - -2.5 821,084 - +1.1
Or see this region's nucleotide sequence