Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00685

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00684 and MIT1002_00685 are separated by 144 nucleotidesMIT1002_00685 and MIT1002_00686 are separated by 169 nucleotidesMIT1002_00686 and MIT1002_00687 are separated by 99 nucleotides MIT1002_00684: MIT1002_00684 - Transposase, at 748,142 to 748,657 _00684 MIT1002_00685: MIT1002_00685 - putative TonB-dependent receptor precursor, at 748,802 to 751,204 _00685 MIT1002_00686: MIT1002_00686 - hypothetical protein, at 751,374 to 751,991 _00686 MIT1002_00687: MIT1002_00687 - ribosomal-protein-S5-alanine N-acetyltransferase, at 752,091 to 752,609 _00687 Position (kb) 748 749 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 748.833 kb on + strandat 748.856 kb on + strandat 748.883 kb on - strandat 748.906 kb on - strandat 748.952 kb on - strandat 748.952 kb on - strandat 748.994 kb on - strandat 749.042 kb on + strandat 749.048 kb on + strand, within MIT1002_00685at 749.207 kb on + strand, within MIT1002_00685at 749.243 kb on + strand, within MIT1002_00685at 749.246 kb on + strand, within MIT1002_00685at 749.251 kb on - strand, within MIT1002_00685at 749.270 kb on + strand, within MIT1002_00685at 749.280 kb on + strand, within MIT1002_00685at 749.280 kb on + strand, within MIT1002_00685at 749.288 kb on - strand, within MIT1002_00685at 749.358 kb on - strand, within MIT1002_00685at 749.358 kb on - strand, within MIT1002_00685at 749.375 kb on + strand, within MIT1002_00685at 749.379 kb on + strand, within MIT1002_00685at 749.429 kb on - strand, within MIT1002_00685at 749.445 kb on - strand, within MIT1002_00685at 749.494 kb on + strand, within MIT1002_00685at 749.541 kb on - strand, within MIT1002_00685at 749.553 kb on - strand, within MIT1002_00685at 749.563 kb on - strand, within MIT1002_00685at 749.563 kb on - strand, within MIT1002_00685at 749.573 kb on - strand, within MIT1002_00685at 749.578 kb on - strand, within MIT1002_00685at 749.703 kb on + strand, within MIT1002_00685at 749.711 kb on - strand, within MIT1002_00685at 749.725 kb on - strand, within MIT1002_00685at 749.772 kb on + strand, within MIT1002_00685at 749.807 kb on + strand, within MIT1002_00685at 749.826 kb on + strand, within MIT1002_00685at 749.856 kb on + strand, within MIT1002_00685at 749.907 kb on + strand, within MIT1002_00685at 749.920 kb on - strand, within MIT1002_00685at 749.987 kb on + strand, within MIT1002_00685at 749.994 kb on - strand, within MIT1002_00685at 750.068 kb on - strand, within MIT1002_00685at 750.086 kb on + strand, within MIT1002_00685at 750.158 kb on + strand, within MIT1002_00685at 750.166 kb on - strand, within MIT1002_00685at 750.166 kb on - strand, within MIT1002_00685at 750.168 kb on - strand, within MIT1002_00685at 750.169 kb on + strand, within MIT1002_00685at 750.177 kb on - strand, within MIT1002_00685at 750.194 kb on + strand, within MIT1002_00685at 750.239 kb on - strand, within MIT1002_00685at 750.283 kb on - strand, within MIT1002_00685at 750.313 kb on + strand, within MIT1002_00685at 750.338 kb on + strand, within MIT1002_00685at 750.346 kb on - strand, within MIT1002_00685at 750.348 kb on + strand, within MIT1002_00685at 750.418 kb on - strand, within MIT1002_00685at 750.418 kb on - strand, within MIT1002_00685at 750.443 kb on + strand, within MIT1002_00685at 750.450 kb on + strand, within MIT1002_00685at 750.479 kb on + strand, within MIT1002_00685at 750.492 kb on - strand, within MIT1002_00685at 750.494 kb on + strand, within MIT1002_00685at 750.722 kb on - strand, within MIT1002_00685at 750.749 kb on + strand, within MIT1002_00685at 750.793 kb on + strand, within MIT1002_00685at 750.793 kb on + strand, within MIT1002_00685at 750.801 kb on - strand, within MIT1002_00685at 750.837 kb on + strand, within MIT1002_00685at 750.837 kb on + strand, within MIT1002_00685at 750.868 kb on - strand, within MIT1002_00685at 750.888 kb on + strand, within MIT1002_00685at 750.894 kb on - strand, within MIT1002_00685at 750.926 kb on + strand, within MIT1002_00685at 750.934 kb on - strand, within MIT1002_00685at 751.003 kb on + strandat 751.003 kb on + strandat 751.030 kb on - strandat 751.080 kb on + strandat 751.215 kb on + strandat 751.220 kb on + strandat 751.225 kb on + strandat 751.228 kb on - strandat 751.233 kb on - strandat 751.237 kb on + strandat 751.237 kb on + strandat 751.237 kb on + strandat 751.245 kb on - strandat 751.245 kb on - strandat 751.245 kb on - strandat 751.330 kb on + strandat 751.347 kb on - strandat 751.354 kb on + strandat 751.422 kb on + strandat 751.422 kb on + strandat 751.422 kb on + strandat 751.487 kb on + strand, within MIT1002_00686at 751.511 kb on - strand, within MIT1002_00686at 751.511 kb on - strand, within MIT1002_00686at 751.601 kb on + strand, within MIT1002_00686at 751.601 kb on + strand, within MIT1002_00686at 751.616 kb on + strand, within MIT1002_00686at 751.624 kb on - strand, within MIT1002_00686at 751.624 kb on - strand, within MIT1002_00686at 751.762 kb on + strand, within MIT1002_00686at 751.762 kb on + strand, within MIT1002_00686at 751.762 kb on + strand, within MIT1002_00686at 751.773 kb on - strand, within MIT1002_00686at 751.781 kb on + strand, within MIT1002_00686at 751.802 kb on - strand, within MIT1002_00686at 751.825 kb on - strand, within MIT1002_00686at 751.838 kb on + strand, within MIT1002_00686at 751.840 kb on + strand, within MIT1002_00686at 751.940 kb on + strandat 751.945 kb on + strandat 751.945 kb on + strandat 751.953 kb on - strandat 752.045 kb on - strandat 752.083 kb on + strandat 752.091 kb on - strandat 752.131 kb on + strandat 752.162 kb on - strand, within MIT1002_00687

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
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748,833 + -2.4
748,856 + -0.2
748,883 - -0.0
748,906 - -0.3
748,952 - +1.0
748,952 - +1.5
748,994 - -0.1
749,042 + -2.7
749,048 + MIT1002_00685 0.10 -0.7
749,207 + MIT1002_00685 0.17 -0.1
749,243 + MIT1002_00685 0.18 -1.1
749,246 + MIT1002_00685 0.18 -2.7
749,251 - MIT1002_00685 0.19 -0.7
749,270 + MIT1002_00685 0.19 +1.5
749,280 + MIT1002_00685 0.20 -2.4
749,280 + MIT1002_00685 0.20 -0.3
749,288 - MIT1002_00685 0.20 -1.7
749,358 - MIT1002_00685 0.23 +0.5
749,358 - MIT1002_00685 0.23 +0.4
749,375 + MIT1002_00685 0.24 -1.2
749,379 + MIT1002_00685 0.24 +1.1
749,429 - MIT1002_00685 0.26 +1.0
749,445 - MIT1002_00685 0.27 +0.4
749,494 + MIT1002_00685 0.29 -1.8
749,541 - MIT1002_00685 0.31 -0.4
749,553 - MIT1002_00685 0.31 +0.9
749,563 - MIT1002_00685 0.32 +1.3
749,563 - MIT1002_00685 0.32 +0.2
749,573 - MIT1002_00685 0.32 -0.3
749,578 - MIT1002_00685 0.32 +0.3
749,703 + MIT1002_00685 0.37 -2.0
749,711 - MIT1002_00685 0.38 -0.5
749,725 - MIT1002_00685 0.38 -0.6
749,772 + MIT1002_00685 0.40 +0.3
749,807 + MIT1002_00685 0.42 +0.6
749,826 + MIT1002_00685 0.43 -3.1
749,856 + MIT1002_00685 0.44 +0.9
749,907 + MIT1002_00685 0.46 +0.9
749,920 - MIT1002_00685 0.47 -2.2
749,987 + MIT1002_00685 0.49 -1.8
749,994 - MIT1002_00685 0.50 -1.1
750,068 - MIT1002_00685 0.53 +0.8
750,086 + MIT1002_00685 0.53 +2.6
750,158 + MIT1002_00685 0.56 -0.0
750,166 - MIT1002_00685 0.57 +0.1
750,166 - MIT1002_00685 0.57 +0.7
750,168 - MIT1002_00685 0.57 -0.1
750,169 + MIT1002_00685 0.57 -0.1
750,177 - MIT1002_00685 0.57 -1.5
750,194 + MIT1002_00685 0.58 +0.6
750,239 - MIT1002_00685 0.60 -1.1
750,283 - MIT1002_00685 0.62 +0.4
750,313 + MIT1002_00685 0.63 -0.7
750,338 + MIT1002_00685 0.64 +1.8
750,346 - MIT1002_00685 0.64 +0.3
750,348 + MIT1002_00685 0.64 +0.6
750,418 - MIT1002_00685 0.67 +0.0
750,418 - MIT1002_00685 0.67 -1.5
750,443 + MIT1002_00685 0.68 -2.5
750,450 + MIT1002_00685 0.69 -0.1
750,479 + MIT1002_00685 0.70 +1.3
750,492 - MIT1002_00685 0.70 +0.4
750,494 + MIT1002_00685 0.70 -1.5
750,722 - MIT1002_00685 0.80 +1.4
750,749 + MIT1002_00685 0.81 +1.4
750,793 + MIT1002_00685 0.83 +0.7
750,793 + MIT1002_00685 0.83 +2.6
750,801 - MIT1002_00685 0.83 +2.7
750,837 + MIT1002_00685 0.85 +0.5
750,837 + MIT1002_00685 0.85 -2.8
750,868 - MIT1002_00685 0.86 +2.8
750,888 + MIT1002_00685 0.87 +1.4
750,894 - MIT1002_00685 0.87 +0.2
750,926 + MIT1002_00685 0.88 -1.1
750,934 - MIT1002_00685 0.89 -1.7
751,003 + -0.1
751,003 + -2.4
751,030 - -2.7
751,080 + +1.7
751,215 + +0.8
751,220 + +2.0
751,225 + +1.1
751,228 - +1.1
751,233 - +0.6
751,237 + +0.1
751,237 + +0.5
751,237 + +0.2
751,245 - -1.5
751,245 - +0.6
751,245 - +0.2
751,330 + -1.8
751,347 - +1.1
751,354 + +0.9
751,422 + +1.1
751,422 + +1.2
751,422 + +0.6
751,487 + MIT1002_00686 0.18 -3.0
751,511 - MIT1002_00686 0.22 -2.7
751,511 - MIT1002_00686 0.22 +0.0
751,601 + MIT1002_00686 0.37 +0.7
751,601 + MIT1002_00686 0.37 +0.5
751,616 + MIT1002_00686 0.39 +1.4
751,624 - MIT1002_00686 0.40 -0.7
751,624 - MIT1002_00686 0.40 +0.5
751,762 + MIT1002_00686 0.63 -0.1
751,762 + MIT1002_00686 0.63 +0.7
751,762 + MIT1002_00686 0.63 -0.4
751,773 - MIT1002_00686 0.65 +1.2
751,781 + MIT1002_00686 0.66 +1.3
751,802 - MIT1002_00686 0.69 -0.1
751,825 - MIT1002_00686 0.73 +1.2
751,838 + MIT1002_00686 0.75 +1.1
751,840 + MIT1002_00686 0.75 +2.0
751,940 + +2.3
751,945 + -3.2
751,945 + +0.1
751,953 - +1.6
752,045 - -2.5
752,083 + -3.6
752,091 - +2.4
752,131 + +0.1
752,162 - MIT1002_00687 0.14 +1.6

Or see this region's nucleotide sequence