Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00631 and MIT1002_00632 are separated by 5 nucleotides MIT1002_00632 and MIT1002_00633 are separated by 99 nucleotides MIT1002_00633 and MIT1002_00634 are separated by 342 nucleotides
MIT1002_00631: MIT1002_00631 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 678,612 to 679,373
_00631
MIT1002_00632: MIT1002_00632 - Cell division protein FtsB, at 679,379 to 679,669
_00632
MIT1002_00633: MIT1002_00633 - putative protein involved in outer membrane biogenesis, at 679,769 to 681,484
_00633
MIT1002_00634: MIT1002_00634 - Methyl-accepting chemotaxis protein 4, at 681,827 to 683,449
_00634
Position (kb) 679
680
681
682 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 679.727 kb on - strand at 679.846 kb on - strand at 679.867 kb on + strand at 679.875 kb on - strand at 679.877 kb on + strand at 679.885 kb on + strand at 680.001 kb on + strand, within MIT1002_00633 at 680.030 kb on - strand, within MIT1002_00633 at 680.044 kb on + strand, within MIT1002_00633 at 680.092 kb on + strand, within MIT1002_00633 at 680.134 kb on + strand, within MIT1002_00633 at 680.142 kb on - strand, within MIT1002_00633 at 680.164 kb on - strand, within MIT1002_00633 at 680.244 kb on + strand, within MIT1002_00633 at 680.254 kb on + strand, within MIT1002_00633 at 680.259 kb on + strand, within MIT1002_00633 at 680.259 kb on + strand, within MIT1002_00633 at 680.262 kb on - strand, within MIT1002_00633 at 680.267 kb on - strand, within MIT1002_00633 at 680.267 kb on - strand, within MIT1002_00633 at 680.267 kb on - strand, within MIT1002_00633 at 680.267 kb on - strand, within MIT1002_00633 at 680.267 kb on - strand, within MIT1002_00633 at 680.301 kb on + strand, within MIT1002_00633 at 680.333 kb on + strand, within MIT1002_00633 at 680.335 kb on - strand, within MIT1002_00633 at 680.341 kb on - strand, within MIT1002_00633 at 680.344 kb on + strand, within MIT1002_00633 at 680.351 kb on - strand, within MIT1002_00633 at 680.427 kb on + strand, within MIT1002_00633 at 680.435 kb on - strand, within MIT1002_00633 at 680.438 kb on + strand, within MIT1002_00633 at 680.438 kb on + strand, within MIT1002_00633 at 680.438 kb on + strand, within MIT1002_00633 at 680.438 kb on + strand, within MIT1002_00633 at 680.446 kb on - strand, within MIT1002_00633 at 680.571 kb on + strand, within MIT1002_00633 at 680.604 kb on + strand, within MIT1002_00633 at 680.627 kb on - strand, within MIT1002_00633 at 680.686 kb on + strand, within MIT1002_00633 at 680.686 kb on + strand, within MIT1002_00633 at 680.686 kb on + strand, within MIT1002_00633 at 680.702 kb on - strand, within MIT1002_00633 at 680.735 kb on - strand, within MIT1002_00633 at 680.745 kb on - strand, within MIT1002_00633 at 680.965 kb on - strand, within MIT1002_00633 at 681.032 kb on + strand, within MIT1002_00633 at 681.144 kb on + strand, within MIT1002_00633 at 681.267 kb on + strand, within MIT1002_00633 at 681.267 kb on - strand, within MIT1002_00633 at 681.277 kb on + strand, within MIT1002_00633 at 681.293 kb on - strand, within MIT1002_00633 at 681.300 kb on - strand, within MIT1002_00633 at 681.343 kb on - strand at 681.348 kb on - strand at 681.348 kb on - strand at 681.372 kb on - strand at 681.459 kb on + strand at 681.459 kb on + strand at 681.467 kb on - strand at 681.467 kb on - strand at 681.469 kb on + strand at 681.475 kb on - strand at 681.521 kb on - strand at 681.538 kb on - strand at 681.550 kb on + strand at 681.550 kb on + strand at 681.550 kb on + strand at 681.552 kb on + strand at 681.595 kb on + strand at 681.603 kb on + strand at 681.613 kb on - strand at 681.637 kb on + strand at 681.652 kb on + strand at 681.653 kb on - strand at 681.740 kb on + strand at 681.740 kb on + strand at 681.750 kb on + strand at 681.784 kb on - strand at 681.796 kb on + strand at 681.804 kb on - strand at 681.832 kb on + strand at 681.832 kb on + strand at 681.832 kb on + strand at 681.840 kb on - strand at 681.881 kb on + strand at 681.931 kb on - strand at 681.933 kb on + strand at 681.933 kb on + strand at 681.936 kb on + strand at 681.945 kb on + strand at 681.945 kb on + strand at 681.951 kb on - strand at 682.072 kb on + strand, within MIT1002_00634 at 682.080 kb on - strand, within MIT1002_00634 at 682.276 kb on - strand, within MIT1002_00634 at 682.352 kb on - strand, within MIT1002_00634 at 682.399 kb on + strand, within MIT1002_00634 at 682.416 kb on - strand, within MIT1002_00634 at 682.425 kb on + strand, within MIT1002_00634 at 682.425 kb on + strand, within MIT1002_00634 at 682.455 kb on + strand, within MIT1002_00634 at 682.463 kb on - strand, within MIT1002_00634
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 679,727 - -0.6 679,846 - +0.6 679,867 + -3.0 679,875 - -0.1 679,877 + -0.4 679,885 + -0.6 680,001 + MIT1002_00633 0.14 -1.7 680,030 - MIT1002_00633 0.15 +0.3 680,044 + MIT1002_00633 0.16 +0.5 680,092 + MIT1002_00633 0.19 +1.8 680,134 + MIT1002_00633 0.21 +1.6 680,142 - MIT1002_00633 0.22 -0.4 680,164 - MIT1002_00633 0.23 +0.7 680,244 + MIT1002_00633 0.28 +0.8 680,254 + MIT1002_00633 0.28 -2.3 680,259 + MIT1002_00633 0.29 +2.1 680,259 + MIT1002_00633 0.29 +0.6 680,262 - MIT1002_00633 0.29 +1.9 680,267 - MIT1002_00633 0.29 +2.7 680,267 - MIT1002_00633 0.29 +0.1 680,267 - MIT1002_00633 0.29 +0.3 680,267 - MIT1002_00633 0.29 +0.8 680,267 - MIT1002_00633 0.29 +0.6 680,301 + MIT1002_00633 0.31 +1.5 680,333 + MIT1002_00633 0.33 -0.4 680,335 - MIT1002_00633 0.33 +1.2 680,341 - MIT1002_00633 0.33 -2.2 680,344 + MIT1002_00633 0.34 -0.1 680,351 - MIT1002_00633 0.34 -2.8 680,427 + MIT1002_00633 0.38 +0.7 680,435 - MIT1002_00633 0.39 +1.5 680,438 + MIT1002_00633 0.39 -0.6 680,438 + MIT1002_00633 0.39 +1.0 680,438 + MIT1002_00633 0.39 -1.1 680,438 + MIT1002_00633 0.39 +2.5 680,446 - MIT1002_00633 0.39 -1.7 680,571 + MIT1002_00633 0.47 +0.2 680,604 + MIT1002_00633 0.49 +2.4 680,627 - MIT1002_00633 0.50 -0.2 680,686 + MIT1002_00633 0.53 +0.1 680,686 + MIT1002_00633 0.53 +0.4 680,686 + MIT1002_00633 0.53 +0.5 680,702 - MIT1002_00633 0.54 -1.1 680,735 - MIT1002_00633 0.56 +1.0 680,745 - MIT1002_00633 0.57 +0.1 680,965 - MIT1002_00633 0.70 +0.5 681,032 + MIT1002_00633 0.74 -0.0 681,144 + MIT1002_00633 0.80 +1.4 681,267 + MIT1002_00633 0.87 +1.4 681,267 - MIT1002_00633 0.87 +5.3 681,277 + MIT1002_00633 0.88 -0.9 681,293 - MIT1002_00633 0.89 +2.5 681,300 - MIT1002_00633 0.89 +0.8 681,343 - +1.3 681,348 - +2.2 681,348 - +3.4 681,372 - +1.0 681,459 + -0.1 681,459 + +1.1 681,467 - -0.4 681,467 - +0.9 681,469 + +1.0 681,475 - +0.3 681,521 - +1.1 681,538 - +0.3 681,550 + +0.6 681,550 + +0.9 681,550 + -1.2 681,552 + +0.3 681,595 + +1.5 681,603 + -1.0 681,613 - +0.1 681,637 + +2.1 681,652 + +1.2 681,653 - -0.7 681,740 + +1.4 681,740 + +1.1 681,750 + +0.3 681,784 - +1.4 681,796 + -0.7 681,804 - +2.5 681,832 + +0.9 681,832 + +1.1 681,832 + -0.3 681,840 - +0.6 681,881 + +0.7 681,931 - +0.2 681,933 + -0.1 681,933 + +0.4 681,936 + +0.0 681,945 + -0.8 681,945 + -0.2 681,951 - -2.3 682,072 + MIT1002_00634 0.15 -1.5 682,080 - MIT1002_00634 0.16 -0.0 682,276 - MIT1002_00634 0.28 -0.2 682,352 - MIT1002_00634 0.32 -1.5 682,399 + MIT1002_00634 0.35 +0.3 682,416 - MIT1002_00634 0.36 -1.6 682,425 + MIT1002_00634 0.37 -4.1 682,425 + MIT1002_00634 0.37 +0.1 682,455 + MIT1002_00634 0.39 +1.1 682,463 - MIT1002_00634 0.39 +0.9
Or see this region's nucleotide sequence