Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00527 and MIT1002_00528 are separated by 283 nucleotides MIT1002_00528 and MIT1002_00529 are separated by 287 nucleotides
MIT1002_00527: MIT1002_00527 - Prolyl tripeptidyl peptidase precursor, at 572,893 to 575,001
_00527
MIT1002_00528: MIT1002_00528 - putative membrane protein, at 575,285 to 575,617
_00528
MIT1002_00529: MIT1002_00529 - Thioredoxin, at 575,905 to 576,774
_00529
Position (kb) 575
576 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 574.338 kb on - strand, within MIT1002_00527 at 574.364 kb on - strand, within MIT1002_00527 at 574.372 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.396 kb on + strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.404 kb on - strand, within MIT1002_00527 at 574.433 kb on - strand, within MIT1002_00527 at 574.438 kb on - strand, within MIT1002_00527 at 574.442 kb on + strand, within MIT1002_00527 at 574.442 kb on + strand, within MIT1002_00527 at 574.448 kb on + strand, within MIT1002_00527 at 574.501 kb on + strand, within MIT1002_00527 at 574.507 kb on + strand, within MIT1002_00527 at 574.515 kb on - strand, within MIT1002_00527 at 574.524 kb on + strand, within MIT1002_00527 at 574.548 kb on + strand, within MIT1002_00527 at 574.689 kb on - strand, within MIT1002_00527 at 574.782 kb on - strand, within MIT1002_00527 at 574.871 kb on - strand at 574.901 kb on + strand at 574.901 kb on + strand at 574.906 kb on + strand at 574.909 kb on - strand at 574.955 kb on - strand at 575.041 kb on - strand at 575.041 kb on - strand at 575.058 kb on + strand at 575.060 kb on + strand at 575.066 kb on - strand at 575.117 kb on - strand at 575.213 kb on - strand at 575.263 kb on - strand at 575.266 kb on + strand at 575.275 kb on - strand at 575.276 kb on + strand at 575.337 kb on - strand, within MIT1002_00528 at 575.450 kb on - strand, within MIT1002_00528 at 575.452 kb on - strand, within MIT1002_00528 at 575.452 kb on - strand, within MIT1002_00528 at 575.463 kb on + strand, within MIT1002_00528 at 575.494 kb on + strand, within MIT1002_00528 at 575.508 kb on - strand, within MIT1002_00528 at 575.614 kb on + strand at 575.615 kb on + strand at 575.622 kb on - strand at 575.623 kb on - strand at 575.636 kb on + strand at 575.675 kb on + strand at 575.683 kb on - strand at 575.751 kb on + strand at 575.761 kb on - strand at 575.835 kb on + strand at 575.835 kb on + strand at 575.858 kb on + strand at 575.895 kb on + strand at 575.895 kb on + strand at 575.975 kb on + strand at 576.026 kb on + strand, within MIT1002_00529 at 576.094 kb on + strand, within MIT1002_00529 at 576.107 kb on - strand, within MIT1002_00529 at 576.172 kb on - strand, within MIT1002_00529 at 576.193 kb on + strand, within MIT1002_00529 at 576.201 kb on - strand, within MIT1002_00529 at 576.309 kb on - strand, within MIT1002_00529 at 576.344 kb on + strand, within MIT1002_00529 at 576.351 kb on + strand, within MIT1002_00529 at 576.358 kb on - strand, within MIT1002_00529 at 576.408 kb on - strand, within MIT1002_00529 at 576.457 kb on + strand, within MIT1002_00529 at 576.469 kb on + strand, within MIT1002_00529 at 576.537 kb on + strand, within MIT1002_00529
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 574,338 - MIT1002_00527 0.69 +0.3 574,364 - MIT1002_00527 0.70 +3.2 574,372 + MIT1002_00527 0.70 -1.3 574,391 + MIT1002_00527 0.71 +1.1 574,391 + MIT1002_00527 0.71 +0.1 574,391 + MIT1002_00527 0.71 -1.0 574,391 + MIT1002_00527 0.71 -1.6 574,391 + MIT1002_00527 0.71 -3.5 574,391 + MIT1002_00527 0.71 +1.1 574,391 + MIT1002_00527 0.71 +0.3 574,391 + MIT1002_00527 0.71 +2.2 574,391 + MIT1002_00527 0.71 -2.4 574,391 + MIT1002_00527 0.71 -0.6 574,396 + MIT1002_00527 0.71 +0.3 574,399 - MIT1002_00527 0.71 -2.3 574,399 - MIT1002_00527 0.71 -0.5 574,399 - MIT1002_00527 0.71 -3.0 574,399 - MIT1002_00527 0.71 +0.5 574,399 - MIT1002_00527 0.71 +0.4 574,399 - MIT1002_00527 0.71 +1.2 574,399 - MIT1002_00527 0.71 +0.7 574,399 - MIT1002_00527 0.71 +1.0 574,399 - MIT1002_00527 0.71 +1.9 574,404 - MIT1002_00527 0.72 -0.9 574,433 - MIT1002_00527 0.73 +0.4 574,438 - MIT1002_00527 0.73 -3.1 574,442 + MIT1002_00527 0.73 -0.3 574,442 + MIT1002_00527 0.73 +0.6 574,448 + MIT1002_00527 0.74 +3.0 574,501 + MIT1002_00527 0.76 -0.4 574,507 + MIT1002_00527 0.77 -2.4 574,515 - MIT1002_00527 0.77 -1.2 574,524 + MIT1002_00527 0.77 -2.7 574,548 + MIT1002_00527 0.78 +0.2 574,689 - MIT1002_00527 0.85 -2.0 574,782 - MIT1002_00527 0.90 +1.9 574,871 - -3.1 574,901 + -1.8 574,901 + +0.1 574,906 + -1.9 574,909 - +1.7 574,955 - +1.3 575,041 - -1.3 575,041 - +1.7 575,058 + +3.6 575,060 + -0.5 575,066 - -2.8 575,117 - +0.9 575,213 - +1.2 575,263 - +1.2 575,266 + +1.0 575,275 - -0.1 575,276 + -3.6 575,337 - MIT1002_00528 0.16 +2.3 575,450 - MIT1002_00528 0.50 +0.8 575,452 - MIT1002_00528 0.50 -0.9 575,452 - MIT1002_00528 0.50 -0.0 575,463 + MIT1002_00528 0.53 +0.8 575,494 + MIT1002_00528 0.63 -0.9 575,508 - MIT1002_00528 0.67 +0.3 575,614 + -0.9 575,615 + +1.4 575,622 - +0.6 575,623 - +0.8 575,636 + -0.0 575,675 + +0.4 575,683 - +0.7 575,751 + +2.4 575,761 - -1.1 575,835 + +1.7 575,835 + -0.2 575,858 + +1.6 575,895 + +0.4 575,895 + +0.1 575,975 + +0.4 576,026 + MIT1002_00529 0.14 -3.8 576,094 + MIT1002_00529 0.22 -1.2 576,107 - MIT1002_00529 0.23 -0.3 576,172 - MIT1002_00529 0.31 -0.9 576,193 + MIT1002_00529 0.33 +1.2 576,201 - MIT1002_00529 0.34 +2.2 576,309 - MIT1002_00529 0.46 +1.1 576,344 + MIT1002_00529 0.50 -0.7 576,351 + MIT1002_00529 0.51 -0.6 576,358 - MIT1002_00529 0.52 -1.5 576,408 - MIT1002_00529 0.58 -0.2 576,457 + MIT1002_00529 0.63 -2.2 576,469 + MIT1002_00529 0.65 -1.3 576,537 + MIT1002_00529 0.73 +2.0
Or see this region's nucleotide sequence