Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00485 and MIT1002_00486 are separated by 10 nucleotides MIT1002_00486 and MIT1002_00487 are separated by 62 nucleotides MIT1002_00487 and MIT1002_00488 are separated by 12 nucleotides MIT1002_00488 and MIT1002_00489 are separated by 253 nucleotides
MIT1002_00485: MIT1002_00485 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 530,457 to 531,488
_00485
MIT1002_00486: MIT1002_00486 - Protein-export protein SecB, at 531,499 to 532,008
_00486
MIT1002_00487: MIT1002_00487 - Glutaredoxin-3, at 532,071 to 532,331
_00487
MIT1002_00488: MIT1002_00488 - Thiosulfate sulfurtransferase GlpE, at 532,344 to 532,769
_00488
MIT1002_00489: MIT1002_00489 - Septal ring factor, at 533,023 to 534,186
_00489
Position (kb) 532
533 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3
4 at 531.364 kb on + strand, within MIT1002_00485 at 531.374 kb on + strand, within MIT1002_00485 at 531.382 kb on - strand, within MIT1002_00485 at 531.387 kb on - strand at 531.419 kb on + strand at 531.481 kb on + strand at 531.489 kb on - strand at 531.518 kb on + strand at 531.598 kb on - strand, within MIT1002_00486 at 532.061 kb on - strand at 532.109 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.324 kb on - strand at 532.369 kb on - strand at 532.369 kb on - strand at 532.461 kb on - strand, within MIT1002_00488 at 532.497 kb on + strand, within MIT1002_00488 at 532.537 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.655 kb on - strand, within MIT1002_00488 at 532.772 kb on + strand at 532.772 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.780 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.801 kb on - strand at 532.803 kb on + strand at 532.850 kb on - strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.930 kb on - strand at 532.944 kb on - strand at 532.981 kb on + strand at 533.063 kb on - strand at 533.063 kb on - strand at 533.104 kb on - strand at 533.112 kb on - strand at 533.162 kb on + strand, within MIT1002_00489 at 533.176 kb on + strand, within MIT1002_00489 at 533.177 kb on - strand, within MIT1002_00489 at 533.195 kb on - strand, within MIT1002_00489 at 533.198 kb on + strand, within MIT1002_00489 at 533.260 kb on + strand, within MIT1002_00489 at 533.265 kb on + strand, within MIT1002_00489 at 533.268 kb on - strand, within MIT1002_00489 at 533.307 kb on + strand, within MIT1002_00489 at 533.379 kb on + strand, within MIT1002_00489 at 533.387 kb on - strand, within MIT1002_00489 at 533.387 kb on - strand, within MIT1002_00489 at 533.404 kb on + strand, within MIT1002_00489 at 533.412 kb on - strand, within MIT1002_00489 at 533.450 kb on + strand, within MIT1002_00489 at 533.450 kb on - strand, within MIT1002_00489 at 533.514 kb on + strand, within MIT1002_00489 at 533.522 kb on - strand, within MIT1002_00489 at 533.549 kb on + strand, within MIT1002_00489 at 533.679 kb on - strand, within MIT1002_00489 at 533.754 kb on - strand, within MIT1002_00489
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 531,364 + MIT1002_00485 0.88 -2.0 531,374 + MIT1002_00485 0.89 -3.2 531,382 - MIT1002_00485 0.90 -6.8 531,387 - -4.6 531,419 + -3.1 531,481 + -4.5 531,489 - -4.3 531,518 + -3.4 531,598 - MIT1002_00486 0.19 -3.6 532,061 - -0.4 532,109 - MIT1002_00487 0.15 +1.9 532,222 - MIT1002_00487 0.58 -2.4 532,222 - MIT1002_00487 0.58 +0.8 532,222 - MIT1002_00487 0.58 -0.9 532,222 - MIT1002_00487 0.58 -0.4 532,324 - -1.1 532,369 - -0.6 532,369 - -2.9 532,461 - MIT1002_00488 0.27 -1.6 532,497 + MIT1002_00488 0.36 -0.9 532,537 + MIT1002_00488 0.45 -1.8 532,570 + MIT1002_00488 0.53 +0.5 532,570 + MIT1002_00488 0.53 -3.8 532,570 + MIT1002_00488 0.53 -0.5 532,570 + MIT1002_00488 0.53 -1.5 532,655 - MIT1002_00488 0.73 -1.1 532,772 + +0.1 532,772 + -1.2 532,773 + +0.8 532,773 + -2.2 532,773 + -0.9 532,773 + +4.2 532,773 + +0.1 532,780 - -4.6 532,781 - -0.2 532,781 - -3.5 532,781 - +0.7 532,781 - -0.6 532,801 - +1.6 532,803 + -1.5 532,850 - -0.5 532,922 + -0.1 532,922 + +0.3 532,922 + +0.8 532,922 + +2.0 532,922 + -0.9 532,930 - -2.0 532,944 - -1.5 532,981 + -1.4 533,063 - -0.5 533,063 - +2.2 533,104 - +0.5 533,112 - -0.5 533,162 + MIT1002_00489 0.12 -2.6 533,176 + MIT1002_00489 0.13 +0.1 533,177 - MIT1002_00489 0.13 +1.9 533,195 - MIT1002_00489 0.15 -0.8 533,198 + MIT1002_00489 0.15 -0.2 533,260 + MIT1002_00489 0.20 +0.9 533,265 + MIT1002_00489 0.21 +1.3 533,268 - MIT1002_00489 0.21 -1.4 533,307 + MIT1002_00489 0.24 -0.1 533,379 + MIT1002_00489 0.31 +0.8 533,387 - MIT1002_00489 0.31 -0.8 533,387 - MIT1002_00489 0.31 +0.9 533,404 + MIT1002_00489 0.33 -2.6 533,412 - MIT1002_00489 0.33 -2.6 533,450 + MIT1002_00489 0.37 -0.7 533,450 - MIT1002_00489 0.37 +1.4 533,514 + MIT1002_00489 0.42 +0.0 533,522 - MIT1002_00489 0.43 -0.6 533,549 + MIT1002_00489 0.45 -1.8 533,679 - MIT1002_00489 0.56 -0.5 533,754 - MIT1002_00489 0.63 -0.9
Or see this region's nucleotide sequence