Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00282 and MIT1002_00283 are separated by 118 nucleotides MIT1002_00283 and MIT1002_00284 are separated by 24 nucleotides MIT1002_00284 and MIT1002_00285 are separated by 9 nucleotides MIT1002_00285 and MIT1002_00286 are separated by 46 nucleotides MIT1002_00286 and MIT1002_00287 overlap by 11 nucleotides
MIT1002_00282: MIT1002_00282 - Hydrogenase isoenzymes formation protein HypE, at 307,260 to 308,312
_00282
MIT1002_00283: MIT1002_00283 - Mercuric resistance operon regulatory protein, at 308,431 to 308,841
_00283
MIT1002_00284: MIT1002_00284 - Copper-exporting P-type ATPase A, at 308,866 to 311,214
_00284
MIT1002_00285: MIT1002_00285 - hypothetical protein, at 311,224 to 311,580
_00285
MIT1002_00286: MIT1002_00286 - hypothetical protein, at 311,627 to 311,950
_00286
MIT1002_00287: MIT1002_00287 - Putative protein-S-isoprenylcysteine methyltransferase, at 311,940 to 312,593
_00287
Position (kb) 308
309
310
311
312 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 307.933 kb on - strand, within MIT1002_00282 at 307.951 kb on + strand, within MIT1002_00282 at 307.974 kb on + strand, within MIT1002_00282 at 307.974 kb on + strand, within MIT1002_00282 at 307.982 kb on - strand, within MIT1002_00282 at 308.044 kb on + strand, within MIT1002_00282 at 308.085 kb on - strand, within MIT1002_00282 at 308.136 kb on - strand, within MIT1002_00282 at 308.229 kb on - strand at 308.286 kb on + strand at 308.321 kb on + strand at 308.321 kb on + strand at 308.321 kb on + strand at 308.329 kb on - strand at 308.329 kb on - strand at 308.329 kb on - strand at 308.338 kb on + strand at 308.341 kb on - strand at 308.345 kb on + strand at 308.345 kb on + strand at 308.345 kb on + strand at 308.353 kb on - strand at 308.353 kb on - strand at 308.355 kb on + strand at 308.360 kb on + strand at 308.360 kb on + strand at 308.377 kb on + strand at 308.386 kb on - strand at 308.458 kb on + strand at 308.467 kb on + strand at 308.477 kb on + strand, within MIT1002_00283 at 308.663 kb on - strand, within MIT1002_00283 at 308.687 kb on + strand, within MIT1002_00283 at 308.696 kb on + strand, within MIT1002_00283 at 308.704 kb on - strand, within MIT1002_00283 at 308.707 kb on + strand, within MIT1002_00283 at 308.711 kb on + strand, within MIT1002_00283 at 308.726 kb on + strand, within MIT1002_00283 at 308.726 kb on + strand, within MIT1002_00283 at 308.726 kb on + strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.941 kb on - strand at 308.998 kb on - strand at 309.060 kb on + strand at 309.060 kb on + strand at 309.072 kb on + strand at 309.114 kb on - strand, within MIT1002_00284 at 309.114 kb on - strand, within MIT1002_00284 at 309.141 kb on + strand, within MIT1002_00284 at 309.149 kb on - strand, within MIT1002_00284 at 309.160 kb on + strand, within MIT1002_00284 at 309.333 kb on + strand, within MIT1002_00284 at 309.377 kb on + strand, within MIT1002_00284 at 309.383 kb on + strand, within MIT1002_00284 at 309.393 kb on + strand, within MIT1002_00284 at 309.492 kb on + strand, within MIT1002_00284 at 309.671 kb on - strand, within MIT1002_00284 at 309.749 kb on + strand, within MIT1002_00284 at 309.749 kb on + strand, within MIT1002_00284 at 309.749 kb on + strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.823 kb on + strand, within MIT1002_00284 at 309.828 kb on + strand, within MIT1002_00284 at 309.836 kb on - strand, within MIT1002_00284 at 309.836 kb on - strand, within MIT1002_00284 at 309.893 kb on + strand, within MIT1002_00284 at 309.975 kb on - strand, within MIT1002_00284 at 310.128 kb on - strand, within MIT1002_00284 at 310.149 kb on + strand, within MIT1002_00284 at 310.150 kb on + strand, within MIT1002_00284 at 310.157 kb on - strand, within MIT1002_00284 at 310.157 kb on - strand, within MIT1002_00284 at 310.160 kb on + strand, within MIT1002_00284 at 310.181 kb on + strand, within MIT1002_00284 at 310.262 kb on - strand, within MIT1002_00284 at 310.371 kb on + strand, within MIT1002_00284 at 310.379 kb on - strand, within MIT1002_00284 at 310.384 kb on - strand, within MIT1002_00284 at 310.419 kb on + strand, within MIT1002_00284 at 310.427 kb on - strand, within MIT1002_00284 at 310.475 kb on + strand, within MIT1002_00284 at 310.477 kb on + strand, within MIT1002_00284 at 310.570 kb on + strand, within MIT1002_00284 at 310.577 kb on + strand, within MIT1002_00284 at 310.585 kb on - strand, within MIT1002_00284 at 310.606 kb on - strand, within MIT1002_00284 at 310.606 kb on - strand, within MIT1002_00284 at 310.670 kb on + strand, within MIT1002_00284 at 310.887 kb on - strand, within MIT1002_00284 at 310.894 kb on - strand, within MIT1002_00284 at 310.896 kb on + strand, within MIT1002_00284 at 310.914 kb on + strand, within MIT1002_00284 at 310.925 kb on + strand, within MIT1002_00284 at 310.973 kb on + strand, within MIT1002_00284 at 310.973 kb on + strand, within MIT1002_00284 at 310.973 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.983 kb on - strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.012 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.027 kb on - strand at 311.113 kb on + strand at 311.115 kb on + strand at 311.115 kb on + strand at 311.123 kb on - strand at 311.123 kb on - strand at 311.177 kb on - strand at 311.177 kb on - strand at 311.249 kb on + strand at 311.249 kb on + strand at 311.257 kb on - strand at 311.257 kb on - strand at 311.324 kb on + strand, within MIT1002_00285 at 311.334 kb on - strand, within MIT1002_00285 at 311.356 kb on - strand, within MIT1002_00285 at 311.397 kb on + strand, within MIT1002_00285 at 311.405 kb on - strand, within MIT1002_00285 at 311.417 kb on + strand, within MIT1002_00285 at 311.417 kb on + strand, within MIT1002_00285 at 311.429 kb on + strand, within MIT1002_00285 at 311.476 kb on + strand, within MIT1002_00285 at 311.497 kb on - strand, within MIT1002_00285 at 311.507 kb on - strand, within MIT1002_00285 at 311.624 kb on + strand at 311.683 kb on - strand, within MIT1002_00286 at 311.698 kb on + strand, within MIT1002_00286 at 311.699 kb on + strand, within MIT1002_00286 at 311.748 kb on - strand, within MIT1002_00286 at 311.802 kb on - strand, within MIT1002_00286 at 311.830 kb on - strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.908 kb on - strand, within MIT1002_00286 at 311.908 kb on - strand, within MIT1002_00286 at 311.963 kb on - strand at 312.050 kb on - strand, within MIT1002_00287 at 312.054 kb on - strand, within MIT1002_00287 at 312.060 kb on - strand, within MIT1002_00287 at 312.149 kb on - strand, within MIT1002_00287
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 307,933 - MIT1002_00282 0.64 -4.3 307,951 + MIT1002_00282 0.66 +0.1 307,974 + MIT1002_00282 0.68 +0.1 307,974 + MIT1002_00282 0.68 -3.2 307,982 - MIT1002_00282 0.69 +1.5 308,044 + MIT1002_00282 0.74 -0.2 308,085 - MIT1002_00282 0.78 -0.0 308,136 - MIT1002_00282 0.83 +1.2 308,229 - +0.4 308,286 + -1.4 308,321 + -3.2 308,321 + -0.0 308,321 + -1.9 308,329 - -0.5 308,329 - +1.7 308,329 - +0.2 308,338 + -0.4 308,341 - -0.7 308,345 + -0.4 308,345 + -0.8 308,345 + +0.0 308,353 - +0.4 308,353 - -0.1 308,355 + -0.1 308,360 + +1.4 308,360 + +0.6 308,377 + -0.4 308,386 - +0.3 308,458 + -1.3 308,467 + -0.5 308,477 + MIT1002_00283 0.11 -1.1 308,663 - MIT1002_00283 0.56 +0.1 308,687 + MIT1002_00283 0.62 +0.9 308,696 + MIT1002_00283 0.64 +0.5 308,704 - MIT1002_00283 0.66 +0.5 308,707 + MIT1002_00283 0.67 -1.0 308,711 + MIT1002_00283 0.68 +1.8 308,726 + MIT1002_00283 0.72 -1.3 308,726 + MIT1002_00283 0.72 +1.1 308,726 + MIT1002_00283 0.72 +1.5 308,734 - MIT1002_00283 0.74 +1.9 308,734 - MIT1002_00283 0.74 -2.2 308,734 - MIT1002_00283 0.74 -2.9 308,734 - MIT1002_00283 0.74 +2.9 308,734 - MIT1002_00283 0.74 +1.7 308,734 - MIT1002_00283 0.74 +1.9 308,941 - +0.9 308,998 - -3.4 309,060 + -1.1 309,060 + -0.0 309,072 + -2.0 309,114 - MIT1002_00284 0.11 +1.5 309,114 - MIT1002_00284 0.11 -0.4 309,141 + MIT1002_00284 0.12 +2.2 309,149 - MIT1002_00284 0.12 +0.6 309,160 + MIT1002_00284 0.13 -0.2 309,333 + MIT1002_00284 0.20 -0.9 309,377 + MIT1002_00284 0.22 -2.1 309,383 + MIT1002_00284 0.22 -0.6 309,393 + MIT1002_00284 0.22 -4.6 309,492 + MIT1002_00284 0.27 -0.4 309,671 - MIT1002_00284 0.34 -1.6 309,749 + MIT1002_00284 0.38 +0.6 309,749 + MIT1002_00284 0.38 -0.1 309,749 + MIT1002_00284 0.38 -3.8 309,757 - MIT1002_00284 0.38 -0.6 309,757 - MIT1002_00284 0.38 +2.1 309,757 - MIT1002_00284 0.38 -0.4 309,757 - MIT1002_00284 0.38 +1.7 309,757 - MIT1002_00284 0.38 -0.6 309,757 - MIT1002_00284 0.38 +0.4 309,823 + MIT1002_00284 0.41 -3.0 309,828 + MIT1002_00284 0.41 +0.6 309,836 - MIT1002_00284 0.41 +2.0 309,836 - MIT1002_00284 0.41 +1.3 309,893 + MIT1002_00284 0.44 -0.2 309,975 - MIT1002_00284 0.47 -1.6 310,128 - MIT1002_00284 0.54 +1.0 310,149 + MIT1002_00284 0.55 -0.9 310,150 + MIT1002_00284 0.55 -1.7 310,157 - MIT1002_00284 0.55 +0.3 310,157 - MIT1002_00284 0.55 -1.0 310,160 + MIT1002_00284 0.55 +2.0 310,181 + MIT1002_00284 0.56 +1.4 310,262 - MIT1002_00284 0.59 -0.6 310,371 + MIT1002_00284 0.64 +1.4 310,379 - MIT1002_00284 0.64 -2.1 310,384 - MIT1002_00284 0.65 +1.9 310,419 + MIT1002_00284 0.66 +0.4 310,427 - MIT1002_00284 0.66 -1.6 310,475 + MIT1002_00284 0.68 -2.7 310,477 + MIT1002_00284 0.69 +1.3 310,570 + MIT1002_00284 0.73 +0.6 310,577 + MIT1002_00284 0.73 +1.3 310,585 - MIT1002_00284 0.73 -1.2 310,606 - MIT1002_00284 0.74 +0.5 310,606 - MIT1002_00284 0.74 -2.2 310,670 + MIT1002_00284 0.77 -1.0 310,887 - MIT1002_00284 0.86 -0.9 310,894 - MIT1002_00284 0.86 -0.1 310,896 + MIT1002_00284 0.86 -0.4 310,914 + MIT1002_00284 0.87 +0.7 310,925 + MIT1002_00284 0.88 -0.9 310,973 + MIT1002_00284 0.90 -2.3 310,973 + MIT1002_00284 0.90 +0.8 310,973 + MIT1002_00284 0.90 +1.0 310,975 + MIT1002_00284 0.90 +0.4 310,975 + MIT1002_00284 0.90 +0.9 310,975 + MIT1002_00284 0.90 +0.6 310,975 + MIT1002_00284 0.90 +0.3 310,975 + MIT1002_00284 0.90 +0.1 310,983 - -2.5 311,009 + +0.7 311,009 + +0.5 311,009 + +1.3 311,009 + +0.5 311,009 + +2.3 311,009 + +1.8 311,012 - -0.4 311,017 - +2.1 311,017 - -0.5 311,017 - -3.4 311,017 - +1.2 311,017 - -0.2 311,017 - -0.1 311,027 - -4.9 311,113 + +0.6 311,115 + +0.4 311,115 + -2.2 311,123 - +0.5 311,123 - -0.3 311,177 - -0.5 311,177 - -0.7 311,249 + +0.1 311,249 + -2.7 311,257 - +1.2 311,257 - +0.7 311,324 + MIT1002_00285 0.28 -0.1 311,334 - MIT1002_00285 0.31 -0.9 311,356 - MIT1002_00285 0.37 +0.6 311,397 + MIT1002_00285 0.48 -0.9 311,405 - MIT1002_00285 0.51 +1.2 311,417 + MIT1002_00285 0.54 -1.0 311,417 + MIT1002_00285 0.54 -3.8 311,429 + MIT1002_00285 0.57 +0.4 311,476 + MIT1002_00285 0.71 -2.3 311,497 - MIT1002_00285 0.76 +1.0 311,507 - MIT1002_00285 0.79 +1.7 311,624 + -1.6 311,683 - MIT1002_00286 0.17 -0.9 311,698 + MIT1002_00286 0.22 -0.4 311,699 + MIT1002_00286 0.22 +0.5 311,748 - MIT1002_00286 0.37 -2.5 311,802 - MIT1002_00286 0.54 -4.2 311,830 - MIT1002_00286 0.63 -3.0 311,895 + MIT1002_00286 0.83 -3.1 311,895 + MIT1002_00286 0.83 -2.2 311,895 + MIT1002_00286 0.83 +1.5 311,895 + MIT1002_00286 0.83 -2.0 311,895 + MIT1002_00286 0.83 +0.6 311,895 + MIT1002_00286 0.83 -0.2 311,903 - MIT1002_00286 0.85 +0.9 311,903 - MIT1002_00286 0.85 +2.5 311,903 - MIT1002_00286 0.85 +1.0 311,903 - MIT1002_00286 0.85 -3.7 311,903 - MIT1002_00286 0.85 +0.1 311,903 - MIT1002_00286 0.85 +2.5 311,903 - MIT1002_00286 0.85 +0.1 311,908 - MIT1002_00286 0.87 -0.1 311,908 - MIT1002_00286 0.87 +0.5 311,963 - +0.9 312,050 - MIT1002_00287 0.17 +1.6 312,054 - MIT1002_00287 0.17 -0.0 312,060 - MIT1002_00287 0.18 -0.4 312,149 - MIT1002_00287 0.32 -0.1
Or see this region's nucleotide sequence