Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00282

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00281 and MIT1002_00282 overlap by 1 nucleotidesMIT1002_00282 and MIT1002_00283 are separated by 118 nucleotidesMIT1002_00283 and MIT1002_00284 are separated by 24 nucleotides MIT1002_00281: MIT1002_00281 - Carbamoyltransferase HypF, at 304,954 to 307,260 _00281 MIT1002_00282: MIT1002_00282 - Hydrogenase isoenzymes formation protein HypE, at 307,260 to 308,312 _00282 MIT1002_00283: MIT1002_00283 - Mercuric resistance operon regulatory protein, at 308,431 to 308,841 _00283 MIT1002_00284: MIT1002_00284 - Copper-exporting P-type ATPase A, at 308,866 to 311,214 _00284 Position (kb) 307 308 309Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 306.273 kb on - strand, within MIT1002_00281at 306.306 kb on + strand, within MIT1002_00281at 306.354 kb on + strand, within MIT1002_00281at 306.409 kb on + strand, within MIT1002_00281at 306.492 kb on + strand, within MIT1002_00281at 306.528 kb on - strand, within MIT1002_00281at 306.570 kb on - strand, within MIT1002_00281at 306.603 kb on - strand, within MIT1002_00281at 306.623 kb on + strand, within MIT1002_00281at 306.678 kb on + strand, within MIT1002_00281at 306.702 kb on - strand, within MIT1002_00281at 306.831 kb on - strand, within MIT1002_00281at 306.833 kb on + strand, within MIT1002_00281at 306.833 kb on + strand, within MIT1002_00281at 306.833 kb on + strand, within MIT1002_00281at 306.833 kb on + strand, within MIT1002_00281at 306.841 kb on - strand, within MIT1002_00281at 306.841 kb on - strand, within MIT1002_00281at 306.841 kb on - strand, within MIT1002_00281at 306.841 kb on - strand, within MIT1002_00281at 306.841 kb on - strand, within MIT1002_00281at 306.862 kb on - strand, within MIT1002_00281at 306.871 kb on + strand, within MIT1002_00281at 306.895 kb on - strand, within MIT1002_00281at 306.903 kb on + strand, within MIT1002_00281at 306.903 kb on + strand, within MIT1002_00281at 306.910 kb on - strand, within MIT1002_00281at 306.911 kb on - strand, within MIT1002_00281at 306.917 kb on - strand, within MIT1002_00281at 307.011 kb on - strand, within MIT1002_00281at 307.061 kb on + strandat 307.061 kb on + strandat 307.140 kb on + strandat 307.150 kb on - strandat 307.162 kb on - strandat 307.175 kb on - strandat 307.220 kb on + strandat 307.220 kb on + strandat 307.220 kb on + strandat 307.244 kb on + strandat 307.267 kb on + strandat 307.326 kb on + strandat 307.339 kb on + strandat 307.347 kb on - strandat 307.357 kb on - strandat 307.396 kb on + strand, within MIT1002_00282at 307.446 kb on - strand, within MIT1002_00282at 307.446 kb on - strand, within MIT1002_00282at 307.478 kb on - strand, within MIT1002_00282at 307.526 kb on - strand, within MIT1002_00282at 307.545 kb on - strand, within MIT1002_00282at 307.568 kb on + strand, within MIT1002_00282at 307.573 kb on + strand, within MIT1002_00282at 307.576 kb on - strand, within MIT1002_00282at 307.586 kb on - strand, within MIT1002_00282at 307.637 kb on + strand, within MIT1002_00282at 307.737 kb on + strand, within MIT1002_00282at 307.786 kb on - strand, within MIT1002_00282at 307.826 kb on - strand, within MIT1002_00282at 307.826 kb on - strand, within MIT1002_00282at 307.826 kb on - strand, within MIT1002_00282at 307.839 kb on - strand, within MIT1002_00282at 307.848 kb on + strand, within MIT1002_00282at 307.861 kb on - strand, within MIT1002_00282at 307.861 kb on - strand, within MIT1002_00282at 307.933 kb on - strand, within MIT1002_00282at 307.951 kb on + strand, within MIT1002_00282at 307.974 kb on + strand, within MIT1002_00282at 307.974 kb on + strand, within MIT1002_00282at 307.982 kb on - strand, within MIT1002_00282at 308.044 kb on + strand, within MIT1002_00282at 308.085 kb on - strand, within MIT1002_00282at 308.136 kb on - strand, within MIT1002_00282at 308.229 kb on - strandat 308.286 kb on + strandat 308.321 kb on + strandat 308.321 kb on + strandat 308.321 kb on + strandat 308.329 kb on - strandat 308.329 kb on - strandat 308.329 kb on - strandat 308.338 kb on + strandat 308.341 kb on - strandat 308.345 kb on + strandat 308.345 kb on + strandat 308.345 kb on + strandat 308.353 kb on - strandat 308.353 kb on - strandat 308.355 kb on + strandat 308.360 kb on + strandat 308.360 kb on + strandat 308.377 kb on + strandat 308.386 kb on - strandat 308.458 kb on + strandat 308.467 kb on + strandat 308.477 kb on + strand, within MIT1002_00283at 308.663 kb on - strand, within MIT1002_00283at 308.687 kb on + strand, within MIT1002_00283at 308.696 kb on + strand, within MIT1002_00283at 308.704 kb on - strand, within MIT1002_00283at 308.707 kb on + strand, within MIT1002_00283at 308.711 kb on + strand, within MIT1002_00283at 308.726 kb on + strand, within MIT1002_00283at 308.726 kb on + strand, within MIT1002_00283at 308.726 kb on + strand, within MIT1002_00283at 308.734 kb on - strand, within MIT1002_00283at 308.734 kb on - strand, within MIT1002_00283at 308.734 kb on - strand, within MIT1002_00283at 308.734 kb on - strand, within MIT1002_00283at 308.734 kb on - strand, within MIT1002_00283at 308.734 kb on - strand, within MIT1002_00283at 308.941 kb on - strandat 308.998 kb on - strandat 309.060 kb on + strandat 309.060 kb on + strandat 309.072 kb on + strandat 309.114 kb on - strand, within MIT1002_00284at 309.114 kb on - strand, within MIT1002_00284at 309.141 kb on + strand, within MIT1002_00284at 309.149 kb on - strand, within MIT1002_00284at 309.160 kb on + strand, within MIT1002_00284

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
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306,273 - MIT1002_00281 0.57 +0.1
306,306 + MIT1002_00281 0.59 +1.6
306,354 + MIT1002_00281 0.61 +1.3
306,409 + MIT1002_00281 0.63 +1.8
306,492 + MIT1002_00281 0.67 +1.7
306,528 - MIT1002_00281 0.68 +1.1
306,570 - MIT1002_00281 0.70 -0.1
306,603 - MIT1002_00281 0.71 +0.6
306,623 + MIT1002_00281 0.72 -2.2
306,678 + MIT1002_00281 0.75 +2.0
306,702 - MIT1002_00281 0.76 -2.0
306,831 - MIT1002_00281 0.81 +1.8
306,833 + MIT1002_00281 0.81 -1.0
306,833 + MIT1002_00281 0.81 +1.4
306,833 + MIT1002_00281 0.81 -1.7
306,833 + MIT1002_00281 0.81 +1.2
306,841 - MIT1002_00281 0.82 -0.2
306,841 - MIT1002_00281 0.82 -0.0
306,841 - MIT1002_00281 0.82 -0.3
306,841 - MIT1002_00281 0.82 +2.0
306,841 - MIT1002_00281 0.82 -1.6
306,862 - MIT1002_00281 0.83 -1.3
306,871 + MIT1002_00281 0.83 -1.2
306,895 - MIT1002_00281 0.84 +0.2
306,903 + MIT1002_00281 0.84 -2.3
306,903 + MIT1002_00281 0.84 -0.8
306,910 - MIT1002_00281 0.85 -1.4
306,911 - MIT1002_00281 0.85 -1.2
306,917 - MIT1002_00281 0.85 -1.6
307,011 - MIT1002_00281 0.89 -0.1
307,061 + +0.9
307,061 + -0.3
307,140 + -0.5
307,150 - -0.0
307,162 - +0.3
307,175 - -1.9
307,220 + +0.5
307,220 + -1.3
307,220 + +0.6
307,244 + -0.2
307,267 + -1.4
307,326 + +1.6
307,339 + +0.7
307,347 - +0.9
307,357 - -0.6
307,396 + MIT1002_00282 0.13 -1.1
307,446 - MIT1002_00282 0.18 +2.6
307,446 - MIT1002_00282 0.18 -2.7
307,478 - MIT1002_00282 0.21 -1.7
307,526 - MIT1002_00282 0.25 +0.5
307,545 - MIT1002_00282 0.27 -0.2
307,568 + MIT1002_00282 0.29 -0.7
307,573 + MIT1002_00282 0.30 +0.1
307,576 - MIT1002_00282 0.30 +1.0
307,586 - MIT1002_00282 0.31 +1.5
307,637 + MIT1002_00282 0.36 -1.8
307,737 + MIT1002_00282 0.45 +0.3
307,786 - MIT1002_00282 0.50 +0.1
307,826 - MIT1002_00282 0.54 -2.6
307,826 - MIT1002_00282 0.54 +2.0
307,826 - MIT1002_00282 0.54 -1.4
307,839 - MIT1002_00282 0.55 -2.9
307,848 + MIT1002_00282 0.56 -0.7
307,861 - MIT1002_00282 0.57 +1.6
307,861 - MIT1002_00282 0.57 +0.4
307,933 - MIT1002_00282 0.64 -4.3
307,951 + MIT1002_00282 0.66 +0.1
307,974 + MIT1002_00282 0.68 +0.1
307,974 + MIT1002_00282 0.68 -3.2
307,982 - MIT1002_00282 0.69 +1.5
308,044 + MIT1002_00282 0.74 -0.2
308,085 - MIT1002_00282 0.78 -0.0
308,136 - MIT1002_00282 0.83 +1.2
308,229 - +0.4
308,286 + -1.4
308,321 + -3.2
308,321 + -0.0
308,321 + -1.9
308,329 - -0.5
308,329 - +1.7
308,329 - +0.2
308,338 + -0.4
308,341 - -0.7
308,345 + -0.4
308,345 + -0.8
308,345 + +0.0
308,353 - +0.4
308,353 - -0.1
308,355 + -0.1
308,360 + +1.4
308,360 + +0.6
308,377 + -0.4
308,386 - +0.3
308,458 + -1.3
308,467 + -0.5
308,477 + MIT1002_00283 0.11 -1.1
308,663 - MIT1002_00283 0.56 +0.1
308,687 + MIT1002_00283 0.62 +0.9
308,696 + MIT1002_00283 0.64 +0.5
308,704 - MIT1002_00283 0.66 +0.5
308,707 + MIT1002_00283 0.67 -1.0
308,711 + MIT1002_00283 0.68 +1.8
308,726 + MIT1002_00283 0.72 -1.3
308,726 + MIT1002_00283 0.72 +1.1
308,726 + MIT1002_00283 0.72 +1.5
308,734 - MIT1002_00283 0.74 +1.9
308,734 - MIT1002_00283 0.74 -2.2
308,734 - MIT1002_00283 0.74 -2.9
308,734 - MIT1002_00283 0.74 +2.9
308,734 - MIT1002_00283 0.74 +1.7
308,734 - MIT1002_00283 0.74 +1.9
308,941 - +0.9
308,998 - -3.4
309,060 + -1.1
309,060 + -0.0
309,072 + -2.0
309,114 - MIT1002_00284 0.11 +1.5
309,114 - MIT1002_00284 0.11 -0.4
309,141 + MIT1002_00284 0.12 +2.2
309,149 - MIT1002_00284 0.12 +0.6
309,160 + MIT1002_00284 0.13 -0.2

Or see this region's nucleotide sequence