Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00259 and MIT1002_00260 are separated by 85 nucleotides MIT1002_00260 and MIT1002_00261 are separated by 99 nucleotides MIT1002_00261 and MIT1002_00262 are separated by 484 nucleotides MIT1002_00262 and MIT1002_00263 are separated by 8 nucleotides MIT1002_00263 and MIT1002_00264 are separated by 15 nucleotides
MIT1002_00259: MIT1002_00259 - hypothetical protein, at 287,248 to 288,231
_00259
MIT1002_00260: MIT1002_00260 - hypothetical protein, at 288,317 to 288,442
_00260
MIT1002_00261: MIT1002_00261 - putative FAD-linked oxidoreductase YvdP, at 288,542 to 290,656
_00261
MIT1002_00262: MIT1002_00262 - hypothetical protein, at 291,141 to 291,263
_00262
MIT1002_00263: MIT1002_00263 - hypothetical protein, at 291,272 to 291,487
_00263
MIT1002_00264: MIT1002_00264 - putative heme-binding domain protein, at 291,503 to 291,796
_00264
Position (kb) 288
289
290
291 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 287.661 kb on - strand, within MIT1002_00259 at 287.687 kb on + strand, within MIT1002_00259 at 287.688 kb on + strand, within MIT1002_00259 at 287.761 kb on + strand, within MIT1002_00259 at 287.813 kb on - strand, within MIT1002_00259 at 287.813 kb on - strand, within MIT1002_00259 at 287.867 kb on - strand, within MIT1002_00259 at 287.953 kb on - strand, within MIT1002_00259 at 287.953 kb on - strand, within MIT1002_00259 at 287.970 kb on + strand, within MIT1002_00259 at 287.978 kb on - strand, within MIT1002_00259 at 288.067 kb on + strand, within MIT1002_00259 at 288.241 kb on + strand at 288.248 kb on - strand at 288.250 kb on + strand at 288.257 kb on - strand at 288.258 kb on - strand at 288.258 kb on - strand at 288.259 kb on + strand at 288.260 kb on + strand at 288.266 kb on + strand at 288.266 kb on + strand at 288.292 kb on - strand at 288.295 kb on + strand at 288.358 kb on - strand, within MIT1002_00260 at 288.553 kb on + strand at 288.564 kb on - strand at 288.564 kb on - strand at 288.572 kb on - strand at 288.651 kb on - strand at 288.744 kb on - strand at 288.764 kb on - strand, within MIT1002_00261 at 288.800 kb on - strand, within MIT1002_00261 at 288.909 kb on + strand, within MIT1002_00261 at 288.973 kb on - strand, within MIT1002_00261 at 288.985 kb on + strand, within MIT1002_00261 at 289.036 kb on + strand, within MIT1002_00261 at 289.071 kb on + strand, within MIT1002_00261 at 289.140 kb on - strand, within MIT1002_00261 at 289.195 kb on - strand, within MIT1002_00261 at 289.336 kb on + strand, within MIT1002_00261 at 289.445 kb on + strand, within MIT1002_00261 at 289.453 kb on - strand, within MIT1002_00261 at 289.473 kb on - strand, within MIT1002_00261 at 289.479 kb on - strand, within MIT1002_00261 at 289.479 kb on - strand, within MIT1002_00261 at 289.565 kb on + strand, within MIT1002_00261 at 289.590 kb on - strand, within MIT1002_00261 at 289.590 kb on - strand, within MIT1002_00261 at 289.625 kb on + strand, within MIT1002_00261 at 289.643 kb on + strand, within MIT1002_00261 at 289.655 kb on + strand, within MIT1002_00261 at 289.655 kb on + strand, within MIT1002_00261 at 289.663 kb on - strand, within MIT1002_00261 at 289.691 kb on - strand, within MIT1002_00261 at 289.806 kb on - strand, within MIT1002_00261 at 289.831 kb on + strand, within MIT1002_00261 at 289.913 kb on - strand, within MIT1002_00261 at 290.013 kb on + strand, within MIT1002_00261 at 290.028 kb on + strand, within MIT1002_00261 at 290.036 kb on - strand, within MIT1002_00261 at 290.045 kb on + strand, within MIT1002_00261 at 290.172 kb on + strand, within MIT1002_00261 at 290.180 kb on - strand, within MIT1002_00261 at 290.231 kb on + strand, within MIT1002_00261 at 290.345 kb on - strand, within MIT1002_00261 at 290.348 kb on - strand, within MIT1002_00261 at 290.350 kb on + strand, within MIT1002_00261 at 290.395 kb on - strand, within MIT1002_00261 at 290.404 kb on + strand, within MIT1002_00261 at 290.412 kb on - strand, within MIT1002_00261 at 290.498 kb on - strand at 290.506 kb on + strand at 290.524 kb on + strand at 290.532 kb on - strand at 290.549 kb on - strand at 290.559 kb on - strand at 290.559 kb on - strand at 290.571 kb on + strand at 290.571 kb on + strand at 290.579 kb on - strand at 290.579 kb on - strand at 290.579 kb on - strand at 290.579 kb on - strand at 290.605 kb on + strand at 290.605 kb on + strand at 290.606 kb on + strand at 290.613 kb on - strand at 290.613 kb on - strand at 290.613 kb on - strand at 290.680 kb on + strand at 290.798 kb on - strand at 290.942 kb on + strand at 290.942 kb on + strand at 290.950 kb on - strand at 290.950 kb on - strand at 290.983 kb on - strand at 290.985 kb on - strand at 291.090 kb on - strand at 291.137 kb on - strand at 291.147 kb on - strand at 291.162 kb on - strand, within MIT1002_00262 at 291.169 kb on + strand, within MIT1002_00262 at 291.196 kb on - strand, within MIT1002_00262 at 291.234 kb on - strand, within MIT1002_00262 at 291.240 kb on + strand, within MIT1002_00262 at 291.248 kb on - strand, within MIT1002_00262 at 291.367 kb on - strand, within MIT1002_00263 at 291.394 kb on + strand, within MIT1002_00263 at 291.394 kb on + strand, within MIT1002_00263 at 291.394 kb on + strand, within MIT1002_00263 at 291.394 kb on + strand, within MIT1002_00263 at 291.402 kb on - strand, within MIT1002_00263 at 291.402 kb on - strand, within MIT1002_00263 at 291.402 kb on - strand, within MIT1002_00263 at 291.402 kb on - strand, within MIT1002_00263 at 291.402 kb on - strand, within MIT1002_00263 at 291.412 kb on - strand, within MIT1002_00263 at 291.440 kb on - strand, within MIT1002_00263 at 291.482 kb on + strand at 291.482 kb on + strand at 291.490 kb on - strand at 291.490 kb on - strand at 291.561 kb on + strand, within MIT1002_00264 at 291.594 kb on + strand, within MIT1002_00264 at 291.595 kb on - strand, within MIT1002_00264 at 291.606 kb on + strand, within MIT1002_00264 at 291.622 kb on - strand, within MIT1002_00264 at 291.649 kb on + strand, within MIT1002_00264
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 287,661 - MIT1002_00259 0.42 +0.1 287,687 + MIT1002_00259 0.45 +1.6 287,688 + MIT1002_00259 0.45 -2.8 287,761 + MIT1002_00259 0.52 +0.9 287,813 - MIT1002_00259 0.57 -1.4 287,813 - MIT1002_00259 0.57 -0.2 287,867 - MIT1002_00259 0.63 +0.9 287,953 - MIT1002_00259 0.72 -3.7 287,953 - MIT1002_00259 0.72 -0.4 287,970 + MIT1002_00259 0.73 -2.6 287,978 - MIT1002_00259 0.74 +1.9 288,067 + MIT1002_00259 0.83 +1.2 288,241 + -1.5 288,248 - +0.3 288,250 + -0.1 288,257 - +0.1 288,258 - +0.9 288,258 - +0.7 288,259 + +0.6 288,260 + -1.8 288,266 + -0.9 288,266 + +0.2 288,292 - -0.4 288,295 + -0.3 288,358 - MIT1002_00260 0.33 -2.3 288,553 + +0.3 288,564 - -1.6 288,564 - -0.2 288,572 - +0.4 288,651 - -0.9 288,744 - +0.5 288,764 - MIT1002_00261 0.10 +0.6 288,800 - MIT1002_00261 0.12 -0.1 288,909 + MIT1002_00261 0.17 +1.4 288,973 - MIT1002_00261 0.20 -0.9 288,985 + MIT1002_00261 0.21 +0.0 289,036 + MIT1002_00261 0.23 +1.0 289,071 + MIT1002_00261 0.25 +0.5 289,140 - MIT1002_00261 0.28 +1.2 289,195 - MIT1002_00261 0.31 -0.4 289,336 + MIT1002_00261 0.38 +0.7 289,445 + MIT1002_00261 0.43 +0.6 289,453 - MIT1002_00261 0.43 -2.4 289,473 - MIT1002_00261 0.44 +0.9 289,479 - MIT1002_00261 0.44 +0.3 289,479 - MIT1002_00261 0.44 +0.4 289,565 + MIT1002_00261 0.48 +1.5 289,590 - MIT1002_00261 0.50 +0.9 289,590 - MIT1002_00261 0.50 -1.1 289,625 + MIT1002_00261 0.51 +1.9 289,643 + MIT1002_00261 0.52 +0.9 289,655 + MIT1002_00261 0.53 +2.5 289,655 + MIT1002_00261 0.53 -0.5 289,663 - MIT1002_00261 0.53 +0.3 289,691 - MIT1002_00261 0.54 +0.8 289,806 - MIT1002_00261 0.60 -0.8 289,831 + MIT1002_00261 0.61 -2.3 289,913 - MIT1002_00261 0.65 +0.5 290,013 + MIT1002_00261 0.70 +0.2 290,028 + MIT1002_00261 0.70 -2.0 290,036 - MIT1002_00261 0.71 -0.7 290,045 + MIT1002_00261 0.71 -0.6 290,172 + MIT1002_00261 0.77 -2.6 290,180 - MIT1002_00261 0.77 +0.6 290,231 + MIT1002_00261 0.80 -2.9 290,345 - MIT1002_00261 0.85 -2.1 290,348 - MIT1002_00261 0.85 +1.1 290,350 + MIT1002_00261 0.85 -3.9 290,395 - MIT1002_00261 0.88 +1.8 290,404 + MIT1002_00261 0.88 -1.4 290,412 - MIT1002_00261 0.88 +0.5 290,498 - -0.5 290,506 + -0.7 290,524 + -1.9 290,532 - +0.3 290,549 - +1.3 290,559 - -2.6 290,559 - +1.2 290,571 + -2.6 290,571 + -0.9 290,579 - -1.6 290,579 - -3.1 290,579 - +0.4 290,579 - +2.1 290,605 + -3.1 290,605 + +0.4 290,606 + +0.2 290,613 - -0.8 290,613 - +0.3 290,613 - +0.1 290,680 + -0.6 290,798 - -0.4 290,942 + -0.4 290,942 + -1.0 290,950 - +1.4 290,950 - +0.1 290,983 - -0.4 290,985 - +1.2 291,090 - -0.0 291,137 - -0.3 291,147 - -2.3 291,162 - MIT1002_00262 0.17 +0.2 291,169 + MIT1002_00262 0.23 -1.1 291,196 - MIT1002_00262 0.45 +1.7 291,234 - MIT1002_00262 0.76 -3.4 291,240 + MIT1002_00262 0.80 -0.2 291,248 - MIT1002_00262 0.87 +0.1 291,367 - MIT1002_00263 0.44 +1.2 291,394 + MIT1002_00263 0.56 +0.7 291,394 + MIT1002_00263 0.56 +1.5 291,394 + MIT1002_00263 0.56 +1.1 291,394 + MIT1002_00263 0.56 +0.5 291,402 - MIT1002_00263 0.60 -0.2 291,402 - MIT1002_00263 0.60 +1.4 291,402 - MIT1002_00263 0.60 +1.1 291,402 - MIT1002_00263 0.60 -2.2 291,402 - MIT1002_00263 0.60 +0.5 291,412 - MIT1002_00263 0.65 -2.9 291,440 - MIT1002_00263 0.78 -0.3 291,482 + +0.3 291,482 + +1.3 291,490 - +1.1 291,490 - +0.9 291,561 + MIT1002_00264 0.20 -0.3 291,594 + MIT1002_00264 0.31 +0.6 291,595 - MIT1002_00264 0.31 -1.0 291,606 + MIT1002_00264 0.35 +1.4 291,622 - MIT1002_00264 0.40 +1.3 291,649 + MIT1002_00264 0.50 +0.8
Or see this region's nucleotide sequence