Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00183 and MIT1002_00184 are separated by 114 nucleotides MIT1002_00184 and MIT1002_00185 are separated by 107 nucleotides MIT1002_00185 and MIT1002_00186 are separated by 148 nucleotides
MIT1002_00183: MIT1002_00183 - Alpha/beta hydrolase family protein, at 199,409 to 200,272
_00183
MIT1002_00184: MIT1002_00184 - hypothetical protein, at 200,387 to 200,542
_00184
MIT1002_00185: MIT1002_00185 - hypothetical protein, at 200,650 to 201,978
_00185
MIT1002_00186: MIT1002_00186 - Mgl repressor and galactose ultrainduction factor, at 202,127 to 203,128
_00186
Position (kb) 200
201
202 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 199.652 kb on - strand, within MIT1002_00183 at 199.714 kb on - strand, within MIT1002_00183 at 199.763 kb on + strand, within MIT1002_00183 at 199.771 kb on - strand, within MIT1002_00183 at 199.818 kb on + strand, within MIT1002_00183 at 199.826 kb on - strand, within MIT1002_00183 at 199.943 kb on + strand, within MIT1002_00183 at 199.951 kb on - strand, within MIT1002_00183 at 199.991 kb on + strand, within MIT1002_00183 at 200.001 kb on + strand, within MIT1002_00183 at 200.038 kb on + strand, within MIT1002_00183 at 200.039 kb on + strand, within MIT1002_00183 at 200.057 kb on + strand, within MIT1002_00183 at 200.081 kb on - strand, within MIT1002_00183 at 200.099 kb on - strand, within MIT1002_00183 at 200.103 kb on - strand, within MIT1002_00183 at 200.110 kb on + strand, within MIT1002_00183 at 200.154 kb on - strand, within MIT1002_00183 at 200.200 kb on + strand at 200.211 kb on - strand at 200.234 kb on + strand at 200.333 kb on - strand at 200.443 kb on + strand, within MIT1002_00184 at 200.451 kb on - strand, within MIT1002_00184 at 200.453 kb on + strand, within MIT1002_00184 at 200.640 kb on - strand at 200.659 kb on - strand at 202.067 kb on + strand at 202.124 kb on + strand at 202.124 kb on + strand at 202.131 kb on + strand at 202.224 kb on + strand at 202.270 kb on - strand, within MIT1002_00186 at 202.284 kb on + strand, within MIT1002_00186 at 202.292 kb on - strand, within MIT1002_00186 at 202.301 kb on + strand, within MIT1002_00186 at 202.324 kb on - strand, within MIT1002_00186 at 202.367 kb on + strand, within MIT1002_00186 at 202.375 kb on - strand, within MIT1002_00186 at 202.447 kb on - strand, within MIT1002_00186 at 202.458 kb on + strand, within MIT1002_00186 at 202.462 kb on - strand, within MIT1002_00186 at 202.505 kb on + strand, within MIT1002_00186 at 202.538 kb on - strand, within MIT1002_00186 at 202.540 kb on + strand, within MIT1002_00186 at 202.560 kb on - strand, within MIT1002_00186 at 202.605 kb on - strand, within MIT1002_00186 at 202.616 kb on + strand, within MIT1002_00186 at 202.709 kb on + strand, within MIT1002_00186 at 202.709 kb on + strand, within MIT1002_00186 at 202.717 kb on - strand, within MIT1002_00186 at 202.746 kb on - strand, within MIT1002_00186 at 202.763 kb on - strand, within MIT1002_00186 at 202.768 kb on - strand, within MIT1002_00186 at 202.776 kb on - strand, within MIT1002_00186 at 202.807 kb on - strand, within MIT1002_00186 at 202.807 kb on - strand, within MIT1002_00186 at 202.845 kb on - strand, within MIT1002_00186 at 202.895 kb on + strand, within MIT1002_00186 at 202.895 kb on + strand, within MIT1002_00186 at 202.903 kb on - strand, within MIT1002_00186 at 202.903 kb on - strand, within MIT1002_00186 at 202.940 kb on + strand, within MIT1002_00186
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 199,652 - MIT1002_00183 0.28 -0.3 199,714 - MIT1002_00183 0.35 +1.6 199,763 + MIT1002_00183 0.41 +0.6 199,771 - MIT1002_00183 0.42 +0.2 199,818 + MIT1002_00183 0.47 +1.3 199,826 - MIT1002_00183 0.48 -2.2 199,943 + MIT1002_00183 0.62 +0.3 199,951 - MIT1002_00183 0.63 +1.5 199,991 + MIT1002_00183 0.67 -0.6 200,001 + MIT1002_00183 0.69 +1.2 200,038 + MIT1002_00183 0.73 -0.4 200,039 + MIT1002_00183 0.73 +0.8 200,057 + MIT1002_00183 0.75 +1.5 200,081 - MIT1002_00183 0.78 +0.4 200,099 - MIT1002_00183 0.80 -0.4 200,103 - MIT1002_00183 0.80 +1.3 200,110 + MIT1002_00183 0.81 +0.5 200,154 - MIT1002_00183 0.86 +0.6 200,200 + -0.3 200,211 - -1.4 200,234 + -0.4 200,333 - +0.7 200,443 + MIT1002_00184 0.36 +0.6 200,451 - MIT1002_00184 0.41 -0.1 200,453 + MIT1002_00184 0.42 +0.7 200,640 - +0.6 200,659 - +1.9 202,067 + -0.9 202,124 + +0.2 202,124 + +1.3 202,131 + -0.2 202,224 + -3.4 202,270 - MIT1002_00186 0.14 -2.9 202,284 + MIT1002_00186 0.16 +0.8 202,292 - MIT1002_00186 0.16 -0.7 202,301 + MIT1002_00186 0.17 +0.0 202,324 - MIT1002_00186 0.20 -2.4 202,367 + MIT1002_00186 0.24 -0.8 202,375 - MIT1002_00186 0.25 -1.8 202,447 - MIT1002_00186 0.32 -1.6 202,458 + MIT1002_00186 0.33 -3.3 202,462 - MIT1002_00186 0.33 -1.3 202,505 + MIT1002_00186 0.38 +3.2 202,538 - MIT1002_00186 0.41 -1.8 202,540 + MIT1002_00186 0.41 -0.4 202,560 - MIT1002_00186 0.43 -2.6 202,605 - MIT1002_00186 0.48 +0.3 202,616 + MIT1002_00186 0.49 -0.7 202,709 + MIT1002_00186 0.58 +1.9 202,709 + MIT1002_00186 0.58 -2.4 202,717 - MIT1002_00186 0.59 -2.2 202,746 - MIT1002_00186 0.62 -0.8 202,763 - MIT1002_00186 0.63 -1.3 202,768 - MIT1002_00186 0.64 -1.3 202,776 - MIT1002_00186 0.65 -1.6 202,807 - MIT1002_00186 0.68 -3.9 202,807 - MIT1002_00186 0.68 +1.6 202,845 - MIT1002_00186 0.72 -2.0 202,895 + MIT1002_00186 0.77 -1.6 202,895 + MIT1002_00186 0.77 -3.4 202,903 - MIT1002_00186 0.77 -0.2 202,903 - MIT1002_00186 0.77 +1.1 202,940 + MIT1002_00186 0.81 +0.6
Or see this region's nucleotide sequence