Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00151

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00150 and MIT1002_00151 are separated by 229 nucleotidesMIT1002_00151 and MIT1002_00152 are separated by 66 nucleotides MIT1002_00150: MIT1002_00150 - Magnesium transporter MgtE, at 164,294 to 165,631 _00150 MIT1002_00151: MIT1002_00151 - putative chloramphenical resistance permease RarD, at 165,861 to 166,775 _00151 MIT1002_00152: MIT1002_00152 - putative diguanylate cyclase YdaM, at 166,842 to 168,119 _00152 Position (kb) 165 166 167Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 164.910 kb on + strand, within MIT1002_00150at 164.927 kb on - strand, within MIT1002_00150at 164.929 kb on - strand, within MIT1002_00150at 165.012 kb on + strand, within MIT1002_00150at 165.012 kb on + strand, within MIT1002_00150at 165.020 kb on - strand, within MIT1002_00150at 165.020 kb on - strand, within MIT1002_00150at 165.020 kb on - strand, within MIT1002_00150at 165.025 kb on - strand, within MIT1002_00150at 165.025 kb on - strand, within MIT1002_00150at 165.025 kb on - strand, within MIT1002_00150at 165.081 kb on + strand, within MIT1002_00150at 165.081 kb on + strand, within MIT1002_00150at 165.089 kb on - strand, within MIT1002_00150at 165.158 kb on - strand, within MIT1002_00150at 165.215 kb on - strand, within MIT1002_00150at 165.284 kb on - strand, within MIT1002_00150at 165.288 kb on + strand, within MIT1002_00150at 165.290 kb on - strand, within MIT1002_00150at 165.311 kb on - strand, within MIT1002_00150at 165.319 kb on + strand, within MIT1002_00150at 165.327 kb on - strand, within MIT1002_00150at 165.356 kb on - strand, within MIT1002_00150at 165.366 kb on - strand, within MIT1002_00150at 165.379 kb on - strand, within MIT1002_00150at 165.380 kb on + strand, within MIT1002_00150at 165.445 kb on - strand, within MIT1002_00150at 165.518 kb on - strandat 165.526 kb on + strandat 165.577 kb on - strandat 165.643 kb on + strandat 165.657 kb on - strandat 165.702 kb on + strandat 165.710 kb on - strandat 165.785 kb on + strandat 165.785 kb on + strandat 165.787 kb on + strandat 165.793 kb on - strandat 165.872 kb on + strandat 165.872 kb on + strandat 165.928 kb on + strandat 165.953 kb on + strand, within MIT1002_00151at 165.953 kb on + strand, within MIT1002_00151at 165.980 kb on - strand, within MIT1002_00151at 165.991 kb on + strand, within MIT1002_00151at 166.010 kb on + strand, within MIT1002_00151at 166.018 kb on - strand, within MIT1002_00151at 166.022 kb on + strand, within MIT1002_00151at 166.022 kb on + strand, within MIT1002_00151at 166.033 kb on + strand, within MIT1002_00151at 166.035 kb on + strand, within MIT1002_00151at 166.045 kb on + strand, within MIT1002_00151at 166.057 kb on + strand, within MIT1002_00151at 166.334 kb on - strand, within MIT1002_00151at 166.353 kb on - strand, within MIT1002_00151at 166.353 kb on - strand, within MIT1002_00151at 166.361 kb on - strand, within MIT1002_00151at 166.459 kb on + strand, within MIT1002_00151at 166.552 kb on - strand, within MIT1002_00151at 166.582 kb on - strand, within MIT1002_00151at 166.597 kb on - strand, within MIT1002_00151at 166.609 kb on + strand, within MIT1002_00151at 166.643 kb on - strand, within MIT1002_00151at 166.662 kb on + strand, within MIT1002_00151at 166.692 kb on - strandat 166.714 kb on + strandat 166.722 kb on - strandat 166.800 kb on - strandat 166.840 kb on + strandat 166.890 kb on - strandat 166.921 kb on + strandat 166.944 kb on + strandat 166.978 kb on + strand, within MIT1002_00152at 167.022 kb on - strand, within MIT1002_00152at 167.238 kb on + strand, within MIT1002_00152at 167.284 kb on - strand, within MIT1002_00152at 167.285 kb on + strand, within MIT1002_00152at 167.291 kb on - strand, within MIT1002_00152at 167.340 kb on - strand, within MIT1002_00152at 167.352 kb on - strand, within MIT1002_00152at 167.404 kb on - strand, within MIT1002_00152at 167.417 kb on + strand, within MIT1002_00152at 167.417 kb on + strand, within MIT1002_00152at 167.425 kb on - strand, within MIT1002_00152at 167.476 kb on + strand, within MIT1002_00152at 167.478 kb on + strand, within MIT1002_00152at 167.484 kb on - strand, within MIT1002_00152at 167.628 kb on + strand, within MIT1002_00152at 167.657 kb on - strand, within MIT1002_00152at 167.674 kb on - strand, within MIT1002_00152at 167.725 kb on - strand, within MIT1002_00152

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
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164,910 + MIT1002_00150 0.46 +1.0
164,927 - MIT1002_00150 0.47 +1.9
164,929 - MIT1002_00150 0.47 +0.5
165,012 + MIT1002_00150 0.54 +0.2
165,012 + MIT1002_00150 0.54 -2.3
165,020 - MIT1002_00150 0.54 +0.3
165,020 - MIT1002_00150 0.54 +1.3
165,020 - MIT1002_00150 0.54 -1.9
165,025 - MIT1002_00150 0.55 -0.0
165,025 - MIT1002_00150 0.55 -1.5
165,025 - MIT1002_00150 0.55 -0.1
165,081 + MIT1002_00150 0.59 +0.4
165,081 + MIT1002_00150 0.59 +1.8
165,089 - MIT1002_00150 0.59 -2.5
165,158 - MIT1002_00150 0.65 +0.9
165,215 - MIT1002_00150 0.69 +0.6
165,284 - MIT1002_00150 0.74 +1.6
165,288 + MIT1002_00150 0.74 +0.7
165,290 - MIT1002_00150 0.74 +2.1
165,311 - MIT1002_00150 0.76 -0.1
165,319 + MIT1002_00150 0.77 +0.3
165,327 - MIT1002_00150 0.77 +0.7
165,356 - MIT1002_00150 0.79 -1.6
165,366 - MIT1002_00150 0.80 -1.1
165,379 - MIT1002_00150 0.81 +1.7
165,380 + MIT1002_00150 0.81 +0.1
165,445 - MIT1002_00150 0.86 +0.3
165,518 - -1.3
165,526 + +0.4
165,577 - +1.3
165,643 + +1.6
165,657 - +1.6
165,702 + -0.8
165,710 - -1.7
165,785 + -2.3
165,785 + -2.8
165,787 + +0.5
165,793 - +0.4
165,872 + -0.4
165,872 + +1.7
165,928 + +1.8
165,953 + MIT1002_00151 0.10 +1.5
165,953 + MIT1002_00151 0.10 -0.3
165,980 - MIT1002_00151 0.13 -0.9
165,991 + MIT1002_00151 0.14 +0.8
166,010 + MIT1002_00151 0.16 -0.0
166,018 - MIT1002_00151 0.17 -0.8
166,022 + MIT1002_00151 0.18 -0.3
166,022 + MIT1002_00151 0.18 -1.2
166,033 + MIT1002_00151 0.19 -2.0
166,035 + MIT1002_00151 0.19 -1.5
166,045 + MIT1002_00151 0.20 +0.6
166,057 + MIT1002_00151 0.21 +0.4
166,334 - MIT1002_00151 0.52 +0.1
166,353 - MIT1002_00151 0.54 -0.5
166,353 - MIT1002_00151 0.54 -0.2
166,361 - MIT1002_00151 0.55 -1.1
166,459 + MIT1002_00151 0.65 +3.6
166,552 - MIT1002_00151 0.76 -3.7
166,582 - MIT1002_00151 0.79 +0.1
166,597 - MIT1002_00151 0.80 -0.6
166,609 + MIT1002_00151 0.82 -0.5
166,643 - MIT1002_00151 0.85 +0.2
166,662 + MIT1002_00151 0.88 +1.6
166,692 - +1.1
166,714 + -0.3
166,722 - +0.1
166,800 - +0.7
166,840 + -0.5
166,890 - -0.9
166,921 + +0.7
166,944 + -2.2
166,978 + MIT1002_00152 0.11 +0.5
167,022 - MIT1002_00152 0.14 +2.5
167,238 + MIT1002_00152 0.31 +1.1
167,284 - MIT1002_00152 0.35 +2.1
167,285 + MIT1002_00152 0.35 +1.0
167,291 - MIT1002_00152 0.35 +3.0
167,340 - MIT1002_00152 0.39 +1.4
167,352 - MIT1002_00152 0.40 -2.8
167,404 - MIT1002_00152 0.44 +0.8
167,417 + MIT1002_00152 0.45 +0.9
167,417 + MIT1002_00152 0.45 -0.2
167,425 - MIT1002_00152 0.46 -0.2
167,476 + MIT1002_00152 0.50 -0.9
167,478 + MIT1002_00152 0.50 -1.7
167,484 - MIT1002_00152 0.50 -0.0
167,628 + MIT1002_00152 0.62 +1.0
167,657 - MIT1002_00152 0.64 -0.2
167,674 - MIT1002_00152 0.65 +0.1
167,725 - MIT1002_00152 0.69 +0.7

Or see this region's nucleotide sequence