Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00146 and MIT1002_00147 are separated by 105 nucleotides MIT1002_00147 and MIT1002_00148 are separated by 85 nucleotides MIT1002_00148 and MIT1002_00149 are separated by 213 nucleotides MIT1002_00149 and MIT1002_00150 are separated by 86 nucleotides
MIT1002_00146: MIT1002_00146 - hypothetical protein, at 160,463 to 160,780
_00146
MIT1002_00147: MIT1002_00147 - Glutathione S-transferase GST-6.0, at 160,886 to 161,554
_00147
MIT1002_00148: MIT1002_00148 - ATP-dependent DNA helicase RecQ, at 161,640 to 163,481
_00148
MIT1002_00149: MIT1002_00149 - putative domain 1, at 163,695 to 164,207
_00149
MIT1002_00150: MIT1002_00150 - Magnesium transporter MgtE, at 164,294 to 165,631
_00150
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 160.674 kb on - strand, within MIT1002_00146 at 160.674 kb on - strand, within MIT1002_00146 at 160.678 kb on + strand, within MIT1002_00146 at 160.700 kb on + strand, within MIT1002_00146 at 160.702 kb on - strand, within MIT1002_00146 at 160.725 kb on - strand, within MIT1002_00146 at 160.803 kb on + strand at 160.828 kb on + strand at 160.830 kb on + strand at 160.832 kb on + strand at 160.838 kb on - strand at 160.954 kb on - strand, within MIT1002_00147 at 161.093 kb on + strand, within MIT1002_00147 at 161.093 kb on + strand, within MIT1002_00147 at 161.101 kb on - strand, within MIT1002_00147 at 161.146 kb on - strand, within MIT1002_00147 at 161.154 kb on + strand, within MIT1002_00147 at 161.220 kb on + strand, within MIT1002_00147 at 161.220 kb on + strand, within MIT1002_00147 at 161.346 kb on + strand, within MIT1002_00147 at 161.354 kb on - strand, within MIT1002_00147 at 161.453 kb on + strand, within MIT1002_00147 at 161.479 kb on - strand, within MIT1002_00147 at 161.509 kb on + strand at 161.509 kb on + strand at 161.509 kb on + strand at 161.509 kb on - strand at 161.556 kb on - strand at 161.556 kb on - strand at 161.578 kb on + strand at 161.586 kb on - strand at 161.636 kb on + strand at 161.675 kb on + strand at 161.737 kb on + strand at 161.739 kb on + strand at 161.745 kb on - strand at 161.800 kb on - strand at 161.823 kb on + strand at 161.831 kb on - strand, within MIT1002_00148 at 161.833 kb on + strand, within MIT1002_00148 at 161.988 kb on - strand, within MIT1002_00148 at 162.026 kb on - strand, within MIT1002_00148 at 162.150 kb on - strand, within MIT1002_00148 at 162.167 kb on + strand, within MIT1002_00148 at 162.167 kb on + strand, within MIT1002_00148 at 162.175 kb on - strand, within MIT1002_00148 at 162.182 kb on - strand, within MIT1002_00148 at 162.201 kb on + strand, within MIT1002_00148 at 162.256 kb on - strand, within MIT1002_00148 at 162.291 kb on - strand, within MIT1002_00148 at 162.327 kb on + strand, within MIT1002_00148 at 162.327 kb on + strand, within MIT1002_00148 at 162.327 kb on + strand, within MIT1002_00148 at 162.404 kb on + strand, within MIT1002_00148 at 162.434 kb on - strand, within MIT1002_00148 at 162.450 kb on + strand, within MIT1002_00148 at 162.482 kb on - strand, within MIT1002_00148 at 162.490 kb on - strand, within MIT1002_00148 at 162.507 kb on + strand, within MIT1002_00148 at 162.507 kb on + strand, within MIT1002_00148 at 162.507 kb on + strand, within MIT1002_00148 at 162.519 kb on + strand, within MIT1002_00148 at 162.536 kb on + strand, within MIT1002_00148 at 162.569 kb on - strand, within MIT1002_00148 at 162.637 kb on - strand, within MIT1002_00148 at 162.659 kb on - strand, within MIT1002_00148 at 162.693 kb on + strand, within MIT1002_00148 at 162.793 kb on + strand, within MIT1002_00148 at 162.793 kb on + strand, within MIT1002_00148 at 162.801 kb on - strand, within MIT1002_00148 at 162.840 kb on - strand, within MIT1002_00148 at 162.854 kb on + strand, within MIT1002_00148 at 162.862 kb on + strand, within MIT1002_00148 at 162.869 kb on + strand, within MIT1002_00148 at 162.870 kb on - strand, within MIT1002_00148 at 162.877 kb on - strand, within MIT1002_00148 at 162.908 kb on + strand, within MIT1002_00148 at 162.973 kb on + strand, within MIT1002_00148 at 162.973 kb on + strand, within MIT1002_00148 at 163.052 kb on + strand, within MIT1002_00148 at 163.087 kb on - strand, within MIT1002_00148 at 163.087 kb on - strand, within MIT1002_00148 at 163.098 kb on + strand, within MIT1002_00148 at 163.108 kb on - strand, within MIT1002_00148 at 163.202 kb on + strand, within MIT1002_00148 at 163.209 kb on - strand, within MIT1002_00148 at 163.209 kb on - strand, within MIT1002_00148 at 163.219 kb on - strand, within MIT1002_00148 at 163.219 kb on - strand, within MIT1002_00148 at 163.219 kb on - strand, within MIT1002_00148 at 163.229 kb on - strand, within MIT1002_00148 at 163.305 kb on + strand at 163.453 kb on + strand at 163.556 kb on + strand at 163.556 kb on + strand at 163.556 kb on + strand at 163.561 kb on + strand at 163.564 kb on - strand at 163.569 kb on + strand at 163.847 kb on + strand, within MIT1002_00149 at 163.924 kb on + strand, within MIT1002_00149 at 163.956 kb on - strand, within MIT1002_00149 at 163.978 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 164.003 kb on - strand, within MIT1002_00149 at 164.003 kb on - strand, within MIT1002_00149 at 164.062 kb on + strand, within MIT1002_00149 at 164.062 kb on + strand, within MIT1002_00149 at 164.062 kb on + strand, within MIT1002_00149 at 164.070 kb on - strand, within MIT1002_00149 at 164.070 kb on - strand, within MIT1002_00149 at 164.080 kb on - strand, within MIT1002_00149 at 164.153 kb on - strand, within MIT1002_00149 at 164.191 kb on + strand at 164.220 kb on - strand at 164.222 kb on + strand at 164.249 kb on - strand at 164.256 kb on + strand at 164.264 kb on - strand at 164.282 kb on - strand at 164.381 kb on - strand at 164.389 kb on - strand at 164.390 kb on + strand at 164.392 kb on + strand at 164.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3 remove 160,674 - MIT1002_00146 0.66 +0.7 160,674 - MIT1002_00146 0.66 -1.8 160,678 + MIT1002_00146 0.68 -0.6 160,700 + MIT1002_00146 0.75 -2.5 160,702 - MIT1002_00146 0.75 -3.2 160,725 - MIT1002_00146 0.82 -0.4 160,803 + -0.5 160,828 + -2.1 160,830 + +0.7 160,832 + +0.3 160,838 - +3.1 160,954 - MIT1002_00147 0.10 +2.6 161,093 + MIT1002_00147 0.31 -2.4 161,093 + MIT1002_00147 0.31 +1.3 161,101 - MIT1002_00147 0.32 +1.1 161,146 - MIT1002_00147 0.39 -0.7 161,154 + MIT1002_00147 0.40 -1.2 161,220 + MIT1002_00147 0.50 +0.5 161,220 + MIT1002_00147 0.50 -2.7 161,346 + MIT1002_00147 0.69 +0.1 161,354 - MIT1002_00147 0.70 -2.5 161,453 + MIT1002_00147 0.85 -0.3 161,479 - MIT1002_00147 0.89 +0.1 161,509 + -0.5 161,509 + +2.8 161,509 + +0.5 161,509 - -0.9 161,556 - +0.3 161,556 - -0.6 161,578 + -2.9 161,586 - +0.7 161,636 + -1.0 161,675 + +0.8 161,737 + -0.9 161,739 + -0.6 161,745 - -0.1 161,800 - +0.7 161,823 + -0.2 161,831 - MIT1002_00148 0.10 +1.2 161,833 + MIT1002_00148 0.10 +0.1 161,988 - MIT1002_00148 0.19 +0.4 162,026 - MIT1002_00148 0.21 +0.6 162,150 - MIT1002_00148 0.28 -1.0 162,167 + MIT1002_00148 0.29 +0.8 162,167 + MIT1002_00148 0.29 +1.0 162,175 - MIT1002_00148 0.29 -2.2 162,182 - MIT1002_00148 0.29 +0.3 162,201 + MIT1002_00148 0.30 -3.0 162,256 - MIT1002_00148 0.33 +0.8 162,291 - MIT1002_00148 0.35 +0.2 162,327 + MIT1002_00148 0.37 -1.9 162,327 + MIT1002_00148 0.37 -3.2 162,327 + MIT1002_00148 0.37 +3.8 162,404 + MIT1002_00148 0.41 +1.1 162,434 - MIT1002_00148 0.43 -0.4 162,450 + MIT1002_00148 0.44 +0.0 162,482 - MIT1002_00148 0.46 +0.2 162,490 - MIT1002_00148 0.46 +0.7 162,507 + MIT1002_00148 0.47 -0.4 162,507 + MIT1002_00148 0.47 -0.4 162,507 + MIT1002_00148 0.47 +0.5 162,519 + MIT1002_00148 0.48 -2.3 162,536 + MIT1002_00148 0.49 -0.9 162,569 - MIT1002_00148 0.50 -2.0 162,637 - MIT1002_00148 0.54 +2.0 162,659 - MIT1002_00148 0.55 +0.3 162,693 + MIT1002_00148 0.57 -0.2 162,793 + MIT1002_00148 0.63 -3.0 162,793 + MIT1002_00148 0.63 +0.9 162,801 - MIT1002_00148 0.63 -1.0 162,840 - MIT1002_00148 0.65 -3.5 162,854 + MIT1002_00148 0.66 +0.5 162,862 + MIT1002_00148 0.66 +0.1 162,869 + MIT1002_00148 0.67 +1.8 162,870 - MIT1002_00148 0.67 -2.3 162,877 - MIT1002_00148 0.67 +1.9 162,908 + MIT1002_00148 0.69 +0.8 162,973 + MIT1002_00148 0.72 -0.2 162,973 + MIT1002_00148 0.72 +0.3 163,052 + MIT1002_00148 0.77 -2.5 163,087 - MIT1002_00148 0.79 -1.1 163,087 - MIT1002_00148 0.79 +1.1 163,098 + MIT1002_00148 0.79 +0.3 163,108 - MIT1002_00148 0.80 +0.5 163,202 + MIT1002_00148 0.85 -1.0 163,209 - MIT1002_00148 0.85 +0.4 163,209 - MIT1002_00148 0.85 -2.0 163,219 - MIT1002_00148 0.86 -0.5 163,219 - MIT1002_00148 0.86 +0.9 163,219 - MIT1002_00148 0.86 -3.4 163,229 - MIT1002_00148 0.86 -1.9 163,305 + +0.7 163,453 + +0.0 163,556 + +1.1 163,556 + -3.1 163,556 + +2.0 163,561 + -0.2 163,564 - +1.9 163,569 + +0.9 163,847 + MIT1002_00149 0.30 +0.6 163,924 + MIT1002_00149 0.45 +0.4 163,956 - MIT1002_00149 0.51 +2.9 163,978 + MIT1002_00149 0.55 +0.3 163,995 + MIT1002_00149 0.58 +0.8 163,995 + MIT1002_00149 0.58 -2.7 163,995 + MIT1002_00149 0.58 +1.9 163,995 + MIT1002_00149 0.58 -2.1 163,995 + MIT1002_00149 0.58 -0.7 164,003 - MIT1002_00149 0.60 +0.0 164,003 - MIT1002_00149 0.60 -0.1 164,062 + MIT1002_00149 0.72 -2.5 164,062 + MIT1002_00149 0.72 -1.2 164,062 + MIT1002_00149 0.72 -0.4 164,070 - MIT1002_00149 0.73 +1.9 164,070 - MIT1002_00149 0.73 +0.0 164,080 - MIT1002_00149 0.75 -2.2 164,153 - MIT1002_00149 0.89 +2.2 164,191 + -0.6 164,220 - +1.0 164,222 + +1.2 164,249 - -0.7 164,256 + -1.3 164,264 - -1.7 164,282 - +0.1 164,381 - -2.5 164,389 - +0.3 164,390 + -0.9 164,392 + -1.4 164,401 - +2.1
Or see this region's nucleotide sequence