Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00121

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00120 and MIT1002_00121 are separated by 10 nucleotidesMIT1002_00121 and MIT1002_00122 are separated by 89 nucleotides MIT1002_00120: MIT1002_00120 - hypothetical protein, at 130,753 to 131,040 _00120 MIT1002_00121: MIT1002_00121 - hypothetical protein, at 131,051 to 131,251 _00121 MIT1002_00122: MIT1002_00122 - UvsW helicase, at 131,341 to 133,731 _00122 Position (kb) 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 130.093 kb on + strandat 130.148 kb on + strandat 130.148 kb on + strandat 130.156 kb on - strandat 130.161 kb on - strandat 130.163 kb on + strandat 130.214 kb on - strandat 130.219 kb on - strandat 130.305 kb on + strandat 130.307 kb on + strandat 130.419 kb on - strandat 130.432 kb on - strandat 130.476 kb on + strandat 130.481 kb on + strandat 130.484 kb on - strandat 130.518 kb on + strandat 130.518 kb on + strandat 130.531 kb on + strandat 130.533 kb on + strandat 130.540 kb on + strandat 130.540 kb on + strandat 130.548 kb on - strandat 130.548 kb on - strandat 130.548 kb on - strandat 130.548 kb on - strandat 130.548 kb on - strandat 130.598 kb on + strandat 130.600 kb on + strandat 130.608 kb on - strandat 130.639 kb on + strandat 130.707 kb on + strandat 130.712 kb on + strandat 130.737 kb on + strandat 130.745 kb on - strandat 130.749 kb on + strandat 130.749 kb on + strandat 130.757 kb on - strandat 130.767 kb on - strandat 130.800 kb on + strand, within MIT1002_00120at 130.800 kb on + strand, within MIT1002_00120at 130.805 kb on + strand, within MIT1002_00120at 130.808 kb on - strand, within MIT1002_00120at 130.808 kb on - strand, within MIT1002_00120at 130.808 kb on - strand, within MIT1002_00120at 130.808 kb on - strand, within MIT1002_00120at 130.808 kb on - strand, within MIT1002_00120at 130.818 kb on - strand, within MIT1002_00120at 130.818 kb on - strand, within MIT1002_00120at 130.823 kb on - strand, within MIT1002_00120at 130.876 kb on - strand, within MIT1002_00120at 130.878 kb on - strand, within MIT1002_00120at 130.980 kb on + strand, within MIT1002_00120at 130.987 kb on + strand, within MIT1002_00120at 131.004 kb on + strand, within MIT1002_00120at 131.013 kb on - strandat 131.036 kb on + strandat 131.049 kb on - strandat 131.080 kb on - strand, within MIT1002_00121at 131.080 kb on - strand, within MIT1002_00121at 131.114 kb on + strand, within MIT1002_00121at 131.138 kb on + strand, within MIT1002_00121at 131.143 kb on + strand, within MIT1002_00121at 131.177 kb on + strand, within MIT1002_00121at 131.240 kb on - strandat 131.241 kb on + strandat 131.306 kb on + strandat 131.307 kb on - strandat 131.307 kb on - strandat 131.332 kb on - strandat 131.399 kb on + strandat 131.404 kb on - strandat 131.442 kb on + strandat 131.466 kb on + strandat 131.584 kb on - strand, within MIT1002_00122at 131.590 kb on + strand, within MIT1002_00122at 131.590 kb on + strand, within MIT1002_00122at 131.591 kb on + strand, within MIT1002_00122at 131.593 kb on - strand, within MIT1002_00122at 131.598 kb on - strand, within MIT1002_00122at 131.598 kb on - strand, within MIT1002_00122at 131.598 kb on - strand, within MIT1002_00122at 131.598 kb on - strand, within MIT1002_00122at 131.598 kb on - strand, within MIT1002_00122at 131.608 kb on - strand, within MIT1002_00122at 131.644 kb on - strand, within MIT1002_00122at 131.696 kb on + strand, within MIT1002_00122at 131.696 kb on + strand, within MIT1002_00122at 131.706 kb on + strand, within MIT1002_00122at 131.729 kb on + strand, within MIT1002_00122at 131.786 kb on - strand, within MIT1002_00122at 131.811 kb on + strand, within MIT1002_00122at 131.811 kb on + strand, within MIT1002_00122at 131.819 kb on - strand, within MIT1002_00122at 131.819 kb on - strand, within MIT1002_00122at 131.819 kb on - strand, within MIT1002_00122at 131.819 kb on - strand, within MIT1002_00122at 131.889 kb on + strand, within MIT1002_00122at 131.889 kb on + strand, within MIT1002_00122at 131.897 kb on - strand, within MIT1002_00122at 131.897 kb on - strand, within MIT1002_00122at 131.923 kb on + strand, within MIT1002_00122at 131.972 kb on + strand, within MIT1002_00122at 132.036 kb on - strand, within MIT1002_00122at 132.217 kb on - strand, within MIT1002_00122at 132.251 kb on + strand, within MIT1002_00122

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
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130,093 + +0.3
130,148 + +0.5
130,148 + -2.2
130,156 - +0.2
130,161 - -0.4
130,163 + +1.4
130,214 - -0.7
130,219 - -0.1
130,305 + -2.2
130,307 + -2.8
130,419 - -0.1
130,432 - -1.8
130,476 + -0.1
130,481 + +0.2
130,484 - +0.4
130,518 + +0.7
130,518 + +0.2
130,531 + +1.2
130,533 + -0.4
130,540 + -2.5
130,540 + -0.6
130,548 - -2.2
130,548 - -0.1
130,548 - -0.3
130,548 - -1.8
130,548 - +1.2
130,598 + -0.7
130,600 + -2.7
130,608 - +1.1
130,639 + +0.1
130,707 + -2.5
130,712 + +1.5
130,737 + +1.2
130,745 - -3.7
130,749 + +0.7
130,749 + -2.8
130,757 - +0.4
130,767 - +0.5
130,800 + MIT1002_00120 0.16 -2.4
130,800 + MIT1002_00120 0.16 +0.2
130,805 + MIT1002_00120 0.18 -2.7
130,808 - MIT1002_00120 0.19 -1.2
130,808 - MIT1002_00120 0.19 -0.1
130,808 - MIT1002_00120 0.19 -0.1
130,808 - MIT1002_00120 0.19 -0.1
130,808 - MIT1002_00120 0.19 +0.8
130,818 - MIT1002_00120 0.23 -0.0
130,818 - MIT1002_00120 0.23 +0.1
130,823 - MIT1002_00120 0.24 +0.1
130,876 - MIT1002_00120 0.43 +1.9
130,878 - MIT1002_00120 0.43 +0.1
130,980 + MIT1002_00120 0.79 -2.4
130,987 + MIT1002_00120 0.81 -0.6
131,004 + MIT1002_00120 0.87 +0.8
131,013 - -1.8
131,036 + -2.4
131,049 - -0.0
131,080 - MIT1002_00121 0.14 +1.6
131,080 - MIT1002_00121 0.14 -0.1
131,114 + MIT1002_00121 0.31 +0.4
131,138 + MIT1002_00121 0.43 +0.6
131,143 + MIT1002_00121 0.46 -1.6
131,177 + MIT1002_00121 0.63 +1.1
131,240 - -0.2
131,241 + -2.8
131,306 + -1.6
131,307 - +0.6
131,307 - +2.9
131,332 - +1.3
131,399 + -0.9
131,404 - -0.7
131,442 + +0.3
131,466 + +1.1
131,584 - MIT1002_00122 0.10 +1.0
131,590 + MIT1002_00122 0.10 +2.0
131,590 + MIT1002_00122 0.10 +0.1
131,591 + MIT1002_00122 0.10 +0.2
131,593 - MIT1002_00122 0.11 -0.6
131,598 - MIT1002_00122 0.11 -1.4
131,598 - MIT1002_00122 0.11 +0.6
131,598 - MIT1002_00122 0.11 -0.6
131,598 - MIT1002_00122 0.11 +1.0
131,598 - MIT1002_00122 0.11 -2.7
131,608 - MIT1002_00122 0.11 +1.3
131,644 - MIT1002_00122 0.13 +1.2
131,696 + MIT1002_00122 0.15 +1.8
131,696 + MIT1002_00122 0.15 -0.0
131,706 + MIT1002_00122 0.15 +0.2
131,729 + MIT1002_00122 0.16 +0.8
131,786 - MIT1002_00122 0.19 -0.3
131,811 + MIT1002_00122 0.20 +0.4
131,811 + MIT1002_00122 0.20 -3.6
131,819 - MIT1002_00122 0.20 -0.7
131,819 - MIT1002_00122 0.20 +2.0
131,819 - MIT1002_00122 0.20 +1.9
131,819 - MIT1002_00122 0.20 +1.9
131,889 + MIT1002_00122 0.23 -0.3
131,889 + MIT1002_00122 0.23 +0.4
131,897 - MIT1002_00122 0.23 +0.1
131,897 - MIT1002_00122 0.23 +1.1
131,923 + MIT1002_00122 0.24 +0.4
131,972 + MIT1002_00122 0.26 -0.2
132,036 - MIT1002_00122 0.29 -1.2
132,217 - MIT1002_00122 0.37 -0.5
132,251 + MIT1002_00122 0.38 -0.6

Or see this region's nucleotide sequence