Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00039

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00037 and MIT1002_00038 are separated by 136 nucleotidesMIT1002_00038 and MIT1002_00039 overlap by 20 nucleotidesMIT1002_00039 and MIT1002_00040 are separated by 142 nucleotides MIT1002_00037: MIT1002_00037 - Lipid A 3-O-deacylase (PagL), at 40,852 to 41,382 _00037 MIT1002_00038: MIT1002_00038 - hypothetical protein, at 41,519 to 42,349 _00038 MIT1002_00039: MIT1002_00039 - hypothetical protein, at 42,330 to 43,121 _00039 MIT1002_00040: MIT1002_00040 - Error-prone DNA polymerase, at 43,264 to 46,353 _00040 Position (kb) 42 43 44Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 41.481 kb on + strandat 41.509 kb on + strandat 41.570 kb on - strandat 41.652 kb on - strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.714 kb on + strand, within MIT1002_00038at 41.722 kb on + strand, within MIT1002_00038at 41.723 kb on + strand, within MIT1002_00038at 41.723 kb on + strand, within MIT1002_00038at 41.731 kb on - strand, within MIT1002_00038at 41.731 kb on - strand, within MIT1002_00038at 41.747 kb on + strand, within MIT1002_00038at 41.767 kb on - strand, within MIT1002_00038at 41.781 kb on + strand, within MIT1002_00038at 41.802 kb on - strand, within MIT1002_00038at 41.827 kb on + strand, within MIT1002_00038at 41.870 kb on - strand, within MIT1002_00038at 42.017 kb on - strand, within MIT1002_00038at 42.026 kb on - strand, within MIT1002_00038at 42.040 kb on + strand, within MIT1002_00038at 42.099 kb on + strand, within MIT1002_00038at 42.107 kb on + strand, within MIT1002_00038at 42.174 kb on + strand, within MIT1002_00038at 42.174 kb on + strand, within MIT1002_00038at 42.177 kb on - strand, within MIT1002_00038at 42.187 kb on - strand, within MIT1002_00038at 42.187 kb on - strand, within MIT1002_00038at 42.187 kb on - strand, within MIT1002_00038at 42.249 kb on - strand, within MIT1002_00038at 42.254 kb on + strand, within MIT1002_00038at 42.299 kb on + strandat 42.367 kb on + strandat 42.392 kb on + strandat 42.397 kb on - strandat 42.561 kb on + strand, within MIT1002_00039at 42.574 kb on - strand, within MIT1002_00039at 42.586 kb on + strand, within MIT1002_00039at 42.608 kb on + strand, within MIT1002_00039at 42.609 kb on + strand, within MIT1002_00039at 42.633 kb on + strand, within MIT1002_00039at 42.633 kb on + strand, within MIT1002_00039at 42.633 kb on + strand, within MIT1002_00039at 42.647 kb on - strand, within MIT1002_00039at 42.718 kb on - strand, within MIT1002_00039at 42.725 kb on - strand, within MIT1002_00039at 42.773 kb on - strand, within MIT1002_00039at 42.791 kb on + strand, within MIT1002_00039at 42.801 kb on + strand, within MIT1002_00039at 42.801 kb on + strand, within MIT1002_00039at 42.801 kb on + strand, within MIT1002_00039at 42.801 kb on + strand, within MIT1002_00039at 42.801 kb on + strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.846 kb on + strand, within MIT1002_00039at 42.889 kb on + strand, within MIT1002_00039at 42.943 kb on - strand, within MIT1002_00039at 43.103 kb on + strandat 43.103 kb on + strandat 43.103 kb on + strandat 43.111 kb on - strandat 43.111 kb on - strandat 43.120 kb on + strandat 43.128 kb on - strandat 43.128 kb on - strandat 43.222 kb on + strandat 43.230 kb on - strandat 43.255 kb on + strandat 43.308 kb on - strandat 43.309 kb on - strandat 43.316 kb on + strandat 43.365 kb on + strandat 43.388 kb on + strandat 43.388 kb on + strandat 43.394 kb on + strandat 43.396 kb on - strandat 43.396 kb on - strandat 43.491 kb on - strandat 43.516 kb on + strandat 43.518 kb on + strandat 43.526 kb on - strandat 43.582 kb on + strand, within MIT1002_00040at 43.582 kb on + strand, within MIT1002_00040at 43.589 kb on + strand, within MIT1002_00040at 43.590 kb on - strand, within MIT1002_00040at 43.646 kb on - strand, within MIT1002_00040at 43.687 kb on - strand, within MIT1002_00040at 43.704 kb on - strand, within MIT1002_00040at 43.704 kb on - strand, within MIT1002_00040at 43.704 kb on - strand, within MIT1002_00040at 43.704 kb on - strand, within MIT1002_00040at 43.711 kb on + strand, within MIT1002_00040at 43.815 kb on + strand, within MIT1002_00040at 43.823 kb on + strand, within MIT1002_00040at 43.831 kb on - strand, within MIT1002_00040at 43.831 kb on - strand, within MIT1002_00040at 43.889 kb on - strand, within MIT1002_00040at 43.891 kb on + strand, within MIT1002_00040at 43.891 kb on + strand, within MIT1002_00040at 43.891 kb on + strand, within MIT1002_00040at 43.891 kb on + strand, within MIT1002_00040at 43.891 kb on + strand, within MIT1002_00040at 43.891 kb on + strand, within MIT1002_00040at 43.894 kb on - strand, within MIT1002_00040at 43.894 kb on - strand, within MIT1002_00040at 43.894 kb on - strand, within MIT1002_00040at 43.899 kb on - strand, within MIT1002_00040at 43.936 kb on + strand, within MIT1002_00040at 43.953 kb on + strand, within MIT1002_00040at 43.953 kb on + strand, within MIT1002_00040at 43.953 kb on + strand, within MIT1002_00040at 43.953 kb on + strand, within MIT1002_00040at 43.953 kb on + strand, within MIT1002_00040at 43.961 kb on - strand, within MIT1002_00040at 43.961 kb on - strand, within MIT1002_00040at 43.961 kb on - strand, within MIT1002_00040at 43.984 kb on + strand, within MIT1002_00040at 44.017 kb on - strand, within MIT1002_00040at 44.019 kb on + strand, within MIT1002_00040at 44.019 kb on + strand, within MIT1002_00040at 44.019 kb on + strand, within MIT1002_00040at 44.019 kb on + strand, within MIT1002_00040at 44.019 kb on + strand, within MIT1002_00040at 44.019 kb on + strand, within MIT1002_00040at 44.019 kb on + strand, within MIT1002_00040at 44.019 kb on + strand, within MIT1002_00040at 44.019 kb on + strand, within MIT1002_00040at 44.027 kb on - strand, within MIT1002_00040at 44.027 kb on - strand, within MIT1002_00040at 44.027 kb on - strand, within MIT1002_00040at 44.027 kb on - strand, within MIT1002_00040at 44.027 kb on - strand, within MIT1002_00040at 44.027 kb on - strand, within MIT1002_00040at 44.027 kb on - strand, within MIT1002_00040at 44.027 kb on - strand, within MIT1002_00040at 44.027 kb on - strand, within MIT1002_00040at 44.092 kb on - strand, within MIT1002_00040at 44.107 kb on + strand, within MIT1002_00040at 44.120 kb on + strand, within MIT1002_00040at 44.120 kb on + strand, within MIT1002_00040

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 3
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41,481 + -3.1
41,509 + +0.8
41,570 - +1.3
41,652 - MIT1002_00038 0.16 +0.8
41,680 + MIT1002_00038 0.19 +0.5
41,680 + MIT1002_00038 0.19 +0.4
41,680 + MIT1002_00038 0.19 +1.0
41,680 + MIT1002_00038 0.19 +1.5
41,680 + MIT1002_00038 0.19 -2.5
41,680 + MIT1002_00038 0.19 +0.7
41,680 + MIT1002_00038 0.19 +2.1
41,680 + MIT1002_00038 0.19 -0.1
41,680 + MIT1002_00038 0.19 -2.4
41,680 + MIT1002_00038 0.19 -2.3
41,688 - MIT1002_00038 0.20 -2.0
41,688 - MIT1002_00038 0.20 -1.1
41,688 - MIT1002_00038 0.20 +1.2
41,688 - MIT1002_00038 0.20 +1.3
41,688 - MIT1002_00038 0.20 -0.1
41,688 - MIT1002_00038 0.20 -0.2
41,714 + MIT1002_00038 0.23 -2.9
41,722 + MIT1002_00038 0.24 +0.8
41,723 + MIT1002_00038 0.25 +0.5
41,723 + MIT1002_00038 0.25 +1.1
41,731 - MIT1002_00038 0.26 +3.3
41,731 - MIT1002_00038 0.26 -2.3
41,747 + MIT1002_00038 0.27 -5.3
41,767 - MIT1002_00038 0.30 +0.2
41,781 + MIT1002_00038 0.32 -0.6
41,802 - MIT1002_00038 0.34 -2.5
41,827 + MIT1002_00038 0.37 +0.1
41,870 - MIT1002_00038 0.42 -0.9
42,017 - MIT1002_00038 0.60 -0.4
42,026 - MIT1002_00038 0.61 +2.8
42,040 + MIT1002_00038 0.63 +0.6
42,099 + MIT1002_00038 0.70 -0.3
42,107 + MIT1002_00038 0.71 +0.5
42,174 + MIT1002_00038 0.79 -2.5
42,174 + MIT1002_00038 0.79 -2.3
42,177 - MIT1002_00038 0.79 -1.9
42,187 - MIT1002_00038 0.80 +0.7
42,187 - MIT1002_00038 0.80 +1.1
42,187 - MIT1002_00038 0.80 -0.3
42,249 - MIT1002_00038 0.88 +0.6
42,254 + MIT1002_00038 0.88 -0.0
42,299 + +0.6
42,367 + -0.1
42,392 + -1.1
42,397 - +0.5
42,561 + MIT1002_00039 0.29 +0.5
42,574 - MIT1002_00039 0.31 -0.9
42,586 + MIT1002_00039 0.32 -0.7
42,608 + MIT1002_00039 0.35 -3.9
42,609 + MIT1002_00039 0.35 -0.7
42,633 + MIT1002_00039 0.38 +0.8
42,633 + MIT1002_00039 0.38 -0.3
42,633 + MIT1002_00039 0.38 +1.0
42,647 - MIT1002_00039 0.40 +0.5
42,718 - MIT1002_00039 0.49 +0.4
42,725 - MIT1002_00039 0.50 +0.3
42,773 - MIT1002_00039 0.56 -0.4
42,791 + MIT1002_00039 0.58 +2.7
42,801 + MIT1002_00039 0.59 -0.4
42,801 + MIT1002_00039 0.59 +0.5
42,801 + MIT1002_00039 0.59 +0.4
42,801 + MIT1002_00039 0.59 -1.8
42,801 + MIT1002_00039 0.59 -2.0
42,809 - MIT1002_00039 0.60 +0.3
42,809 - MIT1002_00039 0.60 -3.5
42,809 - MIT1002_00039 0.60 +0.8
42,809 - MIT1002_00039 0.60 +0.3
42,809 - MIT1002_00039 0.60 -2.6
42,809 - MIT1002_00039 0.60 -0.6
42,809 - MIT1002_00039 0.60 -2.2
42,846 + MIT1002_00039 0.65 +0.3
42,889 + MIT1002_00039 0.71 -1.1
42,943 - MIT1002_00039 0.77 -3.3
43,103 + -0.6
43,103 + -1.9
43,103 + -0.7
43,111 - +0.5
43,111 - -0.2
43,120 + -1.5
43,128 - -0.4
43,128 - +0.3
43,222 + +0.9
43,230 - -0.8
43,255 + +1.2
43,308 - -2.0
43,309 - +2.0
43,316 + -0.3
43,365 + +0.4
43,388 + +1.9
43,388 + -1.5
43,394 + +1.5
43,396 - -1.8
43,396 - +1.6
43,491 - +0.1
43,516 + -4.0
43,518 + -1.3
43,526 - +1.2
43,582 + MIT1002_00040 0.10 +0.5
43,582 + MIT1002_00040 0.10 -2.0
43,589 + MIT1002_00040 0.11 +0.6
43,590 - MIT1002_00040 0.11 +0.0
43,646 - MIT1002_00040 0.12 +0.7
43,687 - MIT1002_00040 0.14 -1.2
43,704 - MIT1002_00040 0.14 -0.7
43,704 - MIT1002_00040 0.14 -2.0
43,704 - MIT1002_00040 0.14 +1.7
43,704 - MIT1002_00040 0.14 -0.0
43,711 + MIT1002_00040 0.14 +2.3
43,815 + MIT1002_00040 0.18 -1.1
43,823 + MIT1002_00040 0.18 +1.4
43,831 - MIT1002_00040 0.18 +0.6
43,831 - MIT1002_00040 0.18 -0.3
43,889 - MIT1002_00040 0.20 -0.9
43,891 + MIT1002_00040 0.20 -2.7
43,891 + MIT1002_00040 0.20 +2.1
43,891 + MIT1002_00040 0.20 -1.0
43,891 + MIT1002_00040 0.20 +0.7
43,891 + MIT1002_00040 0.20 -1.5
43,891 + MIT1002_00040 0.20 -0.1
43,894 - MIT1002_00040 0.20 +1.2
43,894 - MIT1002_00040 0.20 +0.3
43,894 - MIT1002_00040 0.20 -0.4
43,899 - MIT1002_00040 0.21 -2.0
43,936 + MIT1002_00040 0.22 -2.2
43,953 + MIT1002_00040 0.22 -0.1
43,953 + MIT1002_00040 0.22 +0.5
43,953 + MIT1002_00040 0.22 -1.0
43,953 + MIT1002_00040 0.22 +0.7
43,953 + MIT1002_00040 0.22 +2.7
43,961 - MIT1002_00040 0.23 -1.1
43,961 - MIT1002_00040 0.23 -1.1
43,961 - MIT1002_00040 0.23 -3.9
43,984 + MIT1002_00040 0.23 -0.9
44,017 - MIT1002_00040 0.24 +2.8
44,019 + MIT1002_00040 0.24 +0.2
44,019 + MIT1002_00040 0.24 +0.4
44,019 + MIT1002_00040 0.24 +0.9
44,019 + MIT1002_00040 0.24 +0.7
44,019 + MIT1002_00040 0.24 +0.6
44,019 + MIT1002_00040 0.24 -0.5
44,019 + MIT1002_00040 0.24 +0.6
44,019 + MIT1002_00040 0.24 +0.2
44,019 + MIT1002_00040 0.24 -0.1
44,027 - MIT1002_00040 0.25 +1.1
44,027 - MIT1002_00040 0.25 +0.6
44,027 - MIT1002_00040 0.25 -0.6
44,027 - MIT1002_00040 0.25 +0.2
44,027 - MIT1002_00040 0.25 -0.0
44,027 - MIT1002_00040 0.25 +0.4
44,027 - MIT1002_00040 0.25 +0.9
44,027 - MIT1002_00040 0.25 +1.3
44,027 - MIT1002_00040 0.25 -2.0
44,092 - MIT1002_00040 0.27 -1.9
44,107 + MIT1002_00040 0.27 -0.3
44,120 + MIT1002_00040 0.28 -0.1
44,120 + MIT1002_00040 0.28 -3.0

Or see this region's nucleotide sequence