Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19120 and LRK53_RS19125 are separated by 109 nucleotides LRK53_RS19125 and LRK53_RS19130 are separated by 78 nucleotides LRK53_RS19130 and LRK53_RS19135 are separated by 122 nucleotides LRK53_RS19135 and LRK53_RS19140 overlap by 4 nucleotides
LRK53_RS19120: LRK53_RS19120 - hypothetical protein, at 208,385 to 208,666
_RS19120
LRK53_RS19125: LRK53_RS19125 - GPI inositol-deacylase, at 208,776 to 209,438
_RS19125
LRK53_RS19130: LRK53_RS19130 - DNA polymerase III subunit beta, at 209,517 to 210,620
_RS19130
LRK53_RS19135: LRK53_RS19135 - hypothetical protein, at 210,743 to 211,420
_RS19135
LRK53_RS19140: LRK53_RS19140 - hypothetical protein, at 211,417 to 211,875
_RS19140
Position (kb) 209
210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.723 kb on + strand at 208.723 kb on + strand at 208.723 kb on + strand at 208.723 kb on + strand at 208.724 kb on - strand at 208.724 kb on - strand at 208.724 kb on - strand at 208.730 kb on - strand at 208.730 kb on - strand at 208.743 kb on - strand at 208.782 kb on + strand at 208.782 kb on + strand at 208.782 kb on + strand at 208.782 kb on + strand at 208.816 kb on + strand at 208.816 kb on + strand at 208.816 kb on + strand at 208.817 kb on - strand at 208.817 kb on - strand at 208.832 kb on + strand at 208.832 kb on + strand at 208.832 kb on + strand at 208.832 kb on + strand at 208.832 kb on + strand at 208.832 kb on + strand at 208.833 kb on - strand at 208.833 kb on - strand at 208.833 kb on - strand at 208.833 kb on - strand at 208.903 kb on - strand, within LRK53_RS19125 at 208.995 kb on + strand, within LRK53_RS19125 at 208.995 kb on + strand, within LRK53_RS19125 at 208.996 kb on - strand, within LRK53_RS19125 at 208.996 kb on - strand, within LRK53_RS19125 at 209.050 kb on + strand, within LRK53_RS19125 at 209.175 kb on + strand, within LRK53_RS19125 at 209.382 kb on + strand at 209.382 kb on + strand at 209.382 kb on + strand at 209.383 kb on - strand at 209.383 kb on - strand at 209.484 kb on - strand at 209.720 kb on + strand, within LRK53_RS19130 at 209.833 kb on - strand, within LRK53_RS19130 at 209.947 kb on + strand, within LRK53_RS19130 at 209.972 kb on + strand, within LRK53_RS19130 at 209.972 kb on + strand, within LRK53_RS19130 at 209.972 kb on + strand, within LRK53_RS19130 at 209.972 kb on + strand, within LRK53_RS19130 at 209.972 kb on + strand, within LRK53_RS19130 at 209.972 kb on + strand, within LRK53_RS19130 at 209.972 kb on + strand, within LRK53_RS19130 at 209.972 kb on + strand, within LRK53_RS19130 at 209.972 kb on + strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.973 kb on - strand, within LRK53_RS19130 at 209.976 kb on + strand, within LRK53_RS19130 at 209.976 kb on + strand, within LRK53_RS19130 at 209.976 kb on + strand, within LRK53_RS19130 at 209.976 kb on + strand, within LRK53_RS19130 at 209.976 kb on + strand, within LRK53_RS19130 at 209.976 kb on + strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 209.977 kb on - strand, within LRK53_RS19130 at 210.090 kb on + strand, within LRK53_RS19130 at 210.090 kb on + strand, within LRK53_RS19130 at 210.090 kb on + strand, within LRK53_RS19130 at 210.090 kb on + strand, within LRK53_RS19130 at 210.091 kb on - strand, within LRK53_RS19130 at 210.293 kb on - strand, within LRK53_RS19130 at 210.293 kb on - strand, within LRK53_RS19130 at 210.351 kb on + strand, within LRK53_RS19130 at 210.351 kb on + strand, within LRK53_RS19130 at 210.351 kb on + strand, within LRK53_RS19130 at 210.351 kb on + strand, within LRK53_RS19130 at 210.351 kb on + strand, within LRK53_RS19130 at 210.351 kb on + strand, within LRK53_RS19130 at 210.351 kb on + strand, within LRK53_RS19130 at 210.468 kb on + strand, within LRK53_RS19130 at 210.468 kb on + strand, within LRK53_RS19130 at 210.468 kb on + strand, within LRK53_RS19130 at 210.468 kb on + strand, within LRK53_RS19130 at 210.468 kb on + strand, within LRK53_RS19130 at 210.469 kb on - strand, within LRK53_RS19130 at 210.469 kb on - strand, within LRK53_RS19130 at 210.469 kb on - strand, within LRK53_RS19130 at 210.469 kb on - strand, within LRK53_RS19130 at 210.469 kb on - strand, within LRK53_RS19130 at 210.486 kb on + strand, within LRK53_RS19130 at 210.487 kb on - strand, within LRK53_RS19130 at 210.487 kb on - strand, within LRK53_RS19130 at 210.636 kb on + strand at 210.733 kb on + strand at 210.733 kb on + strand at 210.734 kb on - strand at 210.749 kb on + strand at 210.949 kb on - strand, within LRK53_RS19135 at 211.028 kb on + strand, within LRK53_RS19135 at 211.124 kb on + strand, within LRK53_RS19135 at 211.124 kb on + strand, within LRK53_RS19135 at 211.214 kb on + strand, within LRK53_RS19135 at 211.361 kb on + strand at 211.459 kb on + strand at 211.488 kb on + strand, within LRK53_RS19140 at 211.488 kb on + strand, within LRK53_RS19140 at 211.488 kb on + strand, within LRK53_RS19140
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 208,723 + -0.4 208,723 + +0.1 208,723 + +0.7 208,723 + +1.3 208,724 - -1.0 208,724 - -0.3 208,724 - -0.5 208,730 - -0.2 208,730 - +0.7 208,743 - -1.3 208,782 + -0.0 208,782 + +1.5 208,782 + +1.8 208,782 + +1.0 208,816 + -0.2 208,816 + -0.9 208,816 + +0.3 208,817 - +0.1 208,817 - -0.7 208,832 + +0.1 208,832 + -0.8 208,832 + -1.4 208,832 + +1.0 208,832 + +0.7 208,832 + -1.4 208,833 - -0.6 208,833 - +0.5 208,833 - -0.9 208,833 - -0.2 208,903 - LRK53_RS19125 0.19 +0.1 208,995 + LRK53_RS19125 0.33 -1.7 208,995 + LRK53_RS19125 0.33 +1.3 208,996 - LRK53_RS19125 0.33 -0.2 208,996 - LRK53_RS19125 0.33 -1.8 209,050 + LRK53_RS19125 0.41 -0.2 209,175 + LRK53_RS19125 0.60 -0.9 209,382 + -2.0 209,382 + +1.7 209,382 + -0.0 209,383 - +0.4 209,383 - -1.2 209,484 - -0.0 209,720 + LRK53_RS19130 0.18 -0.7 209,833 - LRK53_RS19130 0.29 +0.5 209,947 + LRK53_RS19130 0.39 -0.8 209,972 + LRK53_RS19130 0.41 -0.9 209,972 + LRK53_RS19130 0.41 +1.0 209,972 + LRK53_RS19130 0.41 -0.7 209,972 + LRK53_RS19130 0.41 -1.8 209,972 + LRK53_RS19130 0.41 +2.3 209,972 + LRK53_RS19130 0.41 +1.0 209,972 + LRK53_RS19130 0.41 -0.3 209,972 + LRK53_RS19130 0.41 -0.5 209,972 + LRK53_RS19130 0.41 +0.7 209,973 - LRK53_RS19130 0.41 -0.4 209,973 - LRK53_RS19130 0.41 -0.5 209,973 - LRK53_RS19130 0.41 +1.0 209,973 - LRK53_RS19130 0.41 -0.0 209,973 - LRK53_RS19130 0.41 -1.6 209,973 - LRK53_RS19130 0.41 -1.3 209,973 - LRK53_RS19130 0.41 -0.5 209,973 - LRK53_RS19130 0.41 +0.7 209,973 - LRK53_RS19130 0.41 -1.2 209,973 - LRK53_RS19130 0.41 +2.1 209,973 - LRK53_RS19130 0.41 -0.4 209,973 - LRK53_RS19130 0.41 +0.6 209,976 + LRK53_RS19130 0.42 -1.3 209,976 + LRK53_RS19130 0.42 -3.1 209,976 + LRK53_RS19130 0.42 -0.5 209,976 + LRK53_RS19130 0.42 -1.8 209,976 + LRK53_RS19130 0.42 -1.0 209,976 + LRK53_RS19130 0.42 -0.4 209,977 - LRK53_RS19130 0.42 -0.7 209,977 - LRK53_RS19130 0.42 -1.2 209,977 - LRK53_RS19130 0.42 -3.0 209,977 - LRK53_RS19130 0.42 +1.3 209,977 - LRK53_RS19130 0.42 +0.8 209,977 - LRK53_RS19130 0.42 -0.4 209,977 - LRK53_RS19130 0.42 -0.1 209,977 - LRK53_RS19130 0.42 +1.0 209,977 - LRK53_RS19130 0.42 +1.0 209,977 - LRK53_RS19130 0.42 +0.3 209,977 - LRK53_RS19130 0.42 -0.4 209,977 - LRK53_RS19130 0.42 -0.5 209,977 - LRK53_RS19130 0.42 -1.3 210,090 + LRK53_RS19130 0.52 +1.5 210,090 + LRK53_RS19130 0.52 -0.9 210,090 + LRK53_RS19130 0.52 -0.4 210,090 + LRK53_RS19130 0.52 -1.4 210,091 - LRK53_RS19130 0.52 -2.7 210,293 - LRK53_RS19130 0.70 +0.6 210,293 - LRK53_RS19130 0.70 -1.5 210,351 + LRK53_RS19130 0.76 -1.2 210,351 + LRK53_RS19130 0.76 -1.2 210,351 + LRK53_RS19130 0.76 +0.4 210,351 + LRK53_RS19130 0.76 +0.5 210,351 + LRK53_RS19130 0.76 +0.1 210,351 + LRK53_RS19130 0.76 -0.0 210,351 + LRK53_RS19130 0.76 -0.8 210,468 + LRK53_RS19130 0.86 -1.3 210,468 + LRK53_RS19130 0.86 -1.9 210,468 + LRK53_RS19130 0.86 -0.8 210,468 + LRK53_RS19130 0.86 +0.3 210,468 + LRK53_RS19130 0.86 -0.5 210,469 - LRK53_RS19130 0.86 +0.3 210,469 - LRK53_RS19130 0.86 -2.1 210,469 - LRK53_RS19130 0.86 +0.7 210,469 - LRK53_RS19130 0.86 -1.8 210,469 - LRK53_RS19130 0.86 +1.3 210,486 + LRK53_RS19130 0.88 -0.8 210,487 - LRK53_RS19130 0.88 -0.6 210,487 - LRK53_RS19130 0.88 +0.1 210,636 + -1.0 210,733 + -0.4 210,733 + -0.5 210,734 - +0.7 210,749 + +0.7 210,949 - LRK53_RS19135 0.30 -0.5 211,028 + LRK53_RS19135 0.42 +1.3 211,124 + LRK53_RS19135 0.56 +0.4 211,124 + LRK53_RS19135 0.56 +0.1 211,214 + LRK53_RS19135 0.69 -0.6 211,361 + +0.7 211,459 + -1.0 211,488 + LRK53_RS19140 0.15 -1.4 211,488 + LRK53_RS19140 0.15 +0.3 211,488 + LRK53_RS19140 0.15 -0.7
Or see this region's nucleotide sequence