Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19090 and LRK53_RS19095 are separated by 111 nucleotides LRK53_RS19095 and LRK53_RS19100 are separated by 57 nucleotides LRK53_RS19100 and LRK53_RS19105 are separated by 99 nucleotides LRK53_RS19105 and LRK53_RS19110 are separated by 61 nucleotides
LRK53_RS19090: LRK53_RS19090 - hypothetical protein, at 205,372 to 206,109
_RS19090
LRK53_RS19095: LRK53_RS19095 - hypothetical protein, at 206,221 to 206,472
_RS19095
LRK53_RS19100: LRK53_RS19100 - hypothetical protein, at 206,530 to 206,901
_RS19100
LRK53_RS19105: LRK53_RS19105 - hypothetical protein, at 207,001 to 207,444
_RS19105
LRK53_RS19110: LRK53_RS19110 - hypothetical protein, at 207,506 to 207,709
_RS19110
Position (kb) 206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 205.562 kb on - strand, within LRK53_RS19090 at 205.682 kb on - strand, within LRK53_RS19090 at 205.682 kb on - strand, within LRK53_RS19090 at 205.682 kb on - strand, within LRK53_RS19090 at 205.682 kb on - strand, within LRK53_RS19090 at 205.726 kb on + strand, within LRK53_RS19090 at 205.726 kb on + strand, within LRK53_RS19090 at 205.727 kb on - strand, within LRK53_RS19090 at 205.727 kb on - strand, within LRK53_RS19090 at 205.727 kb on - strand, within LRK53_RS19090 at 205.727 kb on - strand, within LRK53_RS19090 at 205.727 kb on - strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.753 kb on + strand, within LRK53_RS19090 at 205.754 kb on - strand, within LRK53_RS19090 at 205.754 kb on - strand, within LRK53_RS19090 at 205.754 kb on - strand, within LRK53_RS19090 at 205.754 kb on - strand, within LRK53_RS19090 at 205.754 kb on - strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.996 kb on + strand, within LRK53_RS19090 at 205.997 kb on - strand, within LRK53_RS19090 at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.041 kb on + strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.042 kb on - strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.050 kb on - strand at 206.055 kb on + strand at 206.100 kb on + strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.101 kb on - strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.147 kb on + strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.148 kb on - strand at 206.239 kb on + strand at 206.240 kb on - strand at 206.240 kb on - strand at 206.240 kb on - strand at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.374 kb on + strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.375 kb on - strand, within LRK53_RS19095 at 206.581 kb on + strand, within LRK53_RS19100 at 206.581 kb on + strand, within LRK53_RS19100 at 206.581 kb on + strand, within LRK53_RS19100 at 206.582 kb on - strand, within LRK53_RS19100 at 206.582 kb on - strand, within LRK53_RS19100 at 206.740 kb on + strand, within LRK53_RS19100 at 206.842 kb on + strand, within LRK53_RS19100 at 206.842 kb on + strand, within LRK53_RS19100 at 206.843 kb on - strand, within LRK53_RS19100 at 206.967 kb on + strand at 206.968 kb on - strand at 206.968 kb on - strand at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.139 kb on + strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.140 kb on - strand, within LRK53_RS19105 at 207.473 kb on + strand at 207.474 kb on - strand at 207.659 kb on + strand, within LRK53_RS19110 at 207.659 kb on + strand, within LRK53_RS19110 at 207.659 kb on + strand, within LRK53_RS19110 at 207.660 kb on - strand, within LRK53_RS19110 at 207.796 kb on + strand at 207.796 kb on + strand at 207.797 kb on - strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.856 kb on + strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.857 kb on - strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.881 kb on + strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand at 207.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 205,562 - LRK53_RS19090 0.26 +0.1 205,682 - LRK53_RS19090 0.42 +2.3 205,682 - LRK53_RS19090 0.42 -0.2 205,682 - LRK53_RS19090 0.42 +1.5 205,682 - LRK53_RS19090 0.42 +0.3 205,726 + LRK53_RS19090 0.48 -2.0 205,726 + LRK53_RS19090 0.48 -0.0 205,727 - LRK53_RS19090 0.48 +0.1 205,727 - LRK53_RS19090 0.48 -0.4 205,727 - LRK53_RS19090 0.48 +0.7 205,727 - LRK53_RS19090 0.48 -0.6 205,727 - LRK53_RS19090 0.48 -0.2 205,753 + LRK53_RS19090 0.52 -0.4 205,753 + LRK53_RS19090 0.52 -0.3 205,753 + LRK53_RS19090 0.52 -1.0 205,753 + LRK53_RS19090 0.52 +0.2 205,753 + LRK53_RS19090 0.52 +2.3 205,754 - LRK53_RS19090 0.52 +1.0 205,754 - LRK53_RS19090 0.52 +2.0 205,754 - LRK53_RS19090 0.52 -2.2 205,754 - LRK53_RS19090 0.52 -1.3 205,754 - LRK53_RS19090 0.52 -0.6 205,996 + LRK53_RS19090 0.85 +0.1 205,996 + LRK53_RS19090 0.85 -0.2 205,996 + LRK53_RS19090 0.85 -0.6 205,996 + LRK53_RS19090 0.85 -1.1 205,996 + LRK53_RS19090 0.85 -0.3 205,996 + LRK53_RS19090 0.85 -1.2 205,996 + LRK53_RS19090 0.85 +0.7 205,997 - LRK53_RS19090 0.85 +0.5 206,041 + +0.1 206,041 + +0.7 206,041 + -0.3 206,041 + +2.4 206,041 + -1.1 206,041 + +0.3 206,041 + -1.6 206,041 + +0.7 206,041 + +0.4 206,042 - -1.4 206,042 - +0.5 206,042 - +0.2 206,042 - +0.7 206,042 - +0.1 206,042 - +2.3 206,042 - -0.8 206,042 - -1.8 206,042 - +2.1 206,042 - -0.7 206,042 - -2.1 206,042 - +0.7 206,042 - -1.2 206,042 - -2.8 206,042 - -0.0 206,042 - +1.7 206,042 - -1.0 206,042 - -1.4 206,049 + +1.0 206,049 + -1.9 206,049 + -0.4 206,049 + -1.2 206,049 + -2.5 206,050 - +1.0 206,050 - -0.7 206,050 - -0.0 206,050 - +0.1 206,050 - +1.3 206,055 + +0.6 206,100 + +0.3 206,101 - -1.1 206,101 - +1.2 206,101 - +1.3 206,101 - -2.2 206,101 - -0.2 206,101 - -0.3 206,101 - -0.7 206,147 + -2.0 206,147 + +0.3 206,147 + -0.3 206,147 + +1.7 206,147 + -1.5 206,147 + -0.2 206,147 + +0.1 206,147 + +4.1 206,147 + +0.1 206,147 + +1.0 206,147 + -2.7 206,147 + +1.3 206,147 + -0.0 206,147 + -0.0 206,147 + -1.8 206,148 - -0.3 206,148 - -0.8 206,148 - +0.5 206,148 - -0.5 206,148 - +1.3 206,148 - +0.7 206,148 - +0.1 206,148 - +0.1 206,148 - +0.5 206,148 - -0.5 206,148 - -0.4 206,148 - +1.4 206,148 - +0.5 206,148 - -0.4 206,239 + -1.9 206,240 - +0.5 206,240 - -0.3 206,240 - +0.5 206,374 + LRK53_RS19095 0.61 -1.5 206,374 + LRK53_RS19095 0.61 -0.3 206,374 + LRK53_RS19095 0.61 +1.5 206,374 + LRK53_RS19095 0.61 -2.3 206,374 + LRK53_RS19095 0.61 -0.4 206,374 + LRK53_RS19095 0.61 +1.7 206,374 + LRK53_RS19095 0.61 -0.3 206,374 + LRK53_RS19095 0.61 -0.7 206,374 + LRK53_RS19095 0.61 +0.1 206,374 + LRK53_RS19095 0.61 -0.3 206,374 + LRK53_RS19095 0.61 -0.7 206,375 - LRK53_RS19095 0.61 -0.3 206,375 - LRK53_RS19095 0.61 -1.4 206,375 - LRK53_RS19095 0.61 +2.8 206,375 - LRK53_RS19095 0.61 -3.4 206,375 - LRK53_RS19095 0.61 -0.0 206,375 - LRK53_RS19095 0.61 +0.4 206,375 - LRK53_RS19095 0.61 -2.1 206,375 - LRK53_RS19095 0.61 +0.1 206,581 + LRK53_RS19100 0.14 -0.7 206,581 + LRK53_RS19100 0.14 +1.6 206,581 + LRK53_RS19100 0.14 -0.2 206,582 - LRK53_RS19100 0.14 +0.5 206,582 - LRK53_RS19100 0.14 -1.6 206,740 + LRK53_RS19100 0.56 -0.8 206,842 + LRK53_RS19100 0.84 +0.8 206,842 + LRK53_RS19100 0.84 -0.5 206,843 - LRK53_RS19100 0.84 +0.9 206,967 + -0.0 206,968 - +1.1 206,968 - +0.1 207,139 + LRK53_RS19105 0.31 +1.4 207,139 + LRK53_RS19105 0.31 -1.6 207,139 + LRK53_RS19105 0.31 -1.8 207,139 + LRK53_RS19105 0.31 -1.4 207,139 + LRK53_RS19105 0.31 -1.2 207,139 + LRK53_RS19105 0.31 +1.0 207,139 + LRK53_RS19105 0.31 +0.1 207,140 - LRK53_RS19105 0.31 +1.5 207,140 - LRK53_RS19105 0.31 -0.6 207,140 - LRK53_RS19105 0.31 +0.7 207,140 - LRK53_RS19105 0.31 -0.5 207,140 - LRK53_RS19105 0.31 -1.7 207,140 - LRK53_RS19105 0.31 -0.5 207,140 - LRK53_RS19105 0.31 -1.0 207,140 - LRK53_RS19105 0.31 -2.5 207,473 + -1.6 207,474 - -1.7 207,659 + LRK53_RS19110 0.75 +0.1 207,659 + LRK53_RS19110 0.75 -2.5 207,659 + LRK53_RS19110 0.75 -0.2 207,660 - LRK53_RS19110 0.75 -0.6 207,796 + -0.3 207,796 + +0.8 207,797 - +1.5 207,856 + +0.1 207,856 + +1.3 207,856 + +0.3 207,856 + -0.8 207,856 + -1.1 207,857 - -0.3 207,857 - -0.4 207,857 - +1.0 207,857 - -0.2 207,857 - +0.3 207,857 - -0.5 207,881 + -1.5 207,881 + +0.4 207,881 + -0.9 207,881 + +0.3 207,881 + -0.9 207,881 + -0.2 207,881 + -1.9 207,881 + -0.2 207,881 + -2.7 207,881 + +1.5 207,882 - -0.1 207,882 - +0.5 207,882 - -1.0 207,882 - -0.3 207,882 - -1.0 207,882 - -1.0 207,882 - -1.2 207,882 - +0.1 207,882 - -0.4 207,882 - +0.8 207,882 - -2.5 207,882 - +1.9 207,882 - +0.5
Or see this region's nucleotide sequence