Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19035

Experiment: planktonic; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS19020 and LRK53_RS19025 overlap by 8 nucleotidesLRK53_RS19025 and LRK53_RS19030 are separated by 80 nucleotidesLRK53_RS19030 and LRK53_RS19035 overlap by 4 nucleotidesLRK53_RS19035 and LRK53_RS19040 are separated by 82 nucleotidesLRK53_RS19040 and LRK53_RS19045 are separated by 67 nucleotides LRK53_RS19020: LRK53_RS19020 - hypothetical protein, at 194,575 to 194,895 _RS19020 LRK53_RS19025: LRK53_RS19025 - DUF2786 domain-containing protein, at 194,888 to 195,448 _RS19025 LRK53_RS19030: LRK53_RS19030 - hypothetical protein, at 195,529 to 195,771 _RS19030 LRK53_RS19035: LRK53_RS19035 - DUF72 domain-containing protein, at 195,768 to 196,676 _RS19035 LRK53_RS19040: LRK53_RS19040 - hypothetical protein, at 196,759 to 197,139 _RS19040 LRK53_RS19045: LRK53_RS19045 - hypothetical protein, at 197,207 to 198,070 _RS19045 Position (kb) 195 196 197Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.782 kb on + strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.783 kb on - strand, within LRK53_RS19020at 194.812 kb on - strand, within LRK53_RS19020at 195.025 kb on - strand, within LRK53_RS19025at 195.105 kb on + strand, within LRK53_RS19025at 195.105 kb on + strand, within LRK53_RS19025at 195.106 kb on - strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.185 kb on + strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.186 kb on - strand, within LRK53_RS19025at 195.206 kb on + strand, within LRK53_RS19025at 195.206 kb on + strand, within LRK53_RS19025at 195.206 kb on + strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.207 kb on - strand, within LRK53_RS19025at 195.374 kb on + strand, within LRK53_RS19025at 195.374 kb on + strand, within LRK53_RS19025at 195.374 kb on + strand, within LRK53_RS19025at 195.375 kb on - strand, within LRK53_RS19025at 195.475 kb on + strandat 195.475 kb on + strandat 195.475 kb on + strandat 195.475 kb on + strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.476 kb on - strandat 195.480 kb on + strandat 195.481 kb on - strandat 195.756 kb on + strandat 195.756 kb on + strandat 195.757 kb on - strandat 195.774 kb on - strandat 195.831 kb on + strandat 195.832 kb on - strandat 195.871 kb on - strand, within LRK53_RS19035at 195.871 kb on - strand, within LRK53_RS19035at 195.871 kb on - strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.912 kb on + strand, within LRK53_RS19035at 195.912 kb on + strand, within LRK53_RS19035at 195.912 kb on + strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.916 kb on - strand, within LRK53_RS19035at 195.916 kb on - strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.084 kb on - strand, within LRK53_RS19035at 196.084 kb on - strand, within LRK53_RS19035at 196.224 kb on + strand, within LRK53_RS19035at 196.225 kb on - strand, within LRK53_RS19035at 196.230 kb on + strand, within LRK53_RS19035at 196.231 kb on - strand, within LRK53_RS19035at 196.509 kb on + strand, within LRK53_RS19035at 196.509 kb on + strand, within LRK53_RS19035at 196.510 kb on - strand, within LRK53_RS19035at 196.515 kb on + strand, within LRK53_RS19035at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.907 kb on - strand, within LRK53_RS19040at 196.907 kb on - strand, within LRK53_RS19040at 196.933 kb on + strand, within LRK53_RS19040at 196.934 kb on - strand, within LRK53_RS19040at 196.934 kb on - strand, within LRK53_RS19040at 196.967 kb on + strand, within LRK53_RS19040at 196.968 kb on - strand, within LRK53_RS19040at 196.968 kb on - strand, within LRK53_RS19040at 196.968 kb on - strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.050 kb on - strand, within LRK53_RS19040at 197.066 kb on - strand, within LRK53_RS19040at 197.066 kb on - strand, within LRK53_RS19040at 197.137 kb on + strandat 197.137 kb on + strandat 197.137 kb on + strandat 197.137 kb on + strandat 197.201 kb on + strandat 197.201 kb on + strandat 197.201 kb on + strandat 197.201 kb on + strandat 197.201 kb on + strandat 197.201 kb on + strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.426 kb on + strand, within LRK53_RS19045at 197.427 kb on - strand, within LRK53_RS19045at 197.488 kb on + strand, within LRK53_RS19045at 197.561 kb on + strand, within LRK53_RS19045at 197.562 kb on - strand, within LRK53_RS19045at 197.562 kb on - strand, within LRK53_RS19045at 197.562 kb on - strand, within LRK53_RS19045at 197.627 kb on + strand, within LRK53_RS19045at 197.627 kb on + strand, within LRK53_RS19045at 197.628 kb on - strand, within LRK53_RS19045

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM;
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194,782 + LRK53_RS19020 0.64 +0.1
194,782 + LRK53_RS19020 0.64 -1.6
194,782 + LRK53_RS19020 0.64 -0.6
194,782 + LRK53_RS19020 0.64 -0.2
194,782 + LRK53_RS19020 0.64 +0.0
194,783 - LRK53_RS19020 0.65 +0.3
194,783 - LRK53_RS19020 0.65 +2.3
194,783 - LRK53_RS19020 0.65 +1.0
194,783 - LRK53_RS19020 0.65 +0.3
194,812 - LRK53_RS19020 0.74 +0.5
195,025 - LRK53_RS19025 0.24 -0.0
195,105 + LRK53_RS19025 0.39 -0.6
195,105 + LRK53_RS19025 0.39 -0.0
195,106 - LRK53_RS19025 0.39 +0.1
195,185 + LRK53_RS19025 0.53 +0.8
195,185 + LRK53_RS19025 0.53 -2.5
195,185 + LRK53_RS19025 0.53 -0.5
195,185 + LRK53_RS19025 0.53 -2.5
195,185 + LRK53_RS19025 0.53 +0.3
195,186 - LRK53_RS19025 0.53 +0.1
195,186 - LRK53_RS19025 0.53 +1.3
195,186 - LRK53_RS19025 0.53 -0.4
195,186 - LRK53_RS19025 0.53 -1.5
195,186 - LRK53_RS19025 0.53 -1.0
195,186 - LRK53_RS19025 0.53 +1.0
195,186 - LRK53_RS19025 0.53 +1.3
195,206 + LRK53_RS19025 0.57 -0.6
195,206 + LRK53_RS19025 0.57 -2.1
195,206 + LRK53_RS19025 0.57 -0.4
195,207 - LRK53_RS19025 0.57 +1.0
195,207 - LRK53_RS19025 0.57 +1.0
195,207 - LRK53_RS19025 0.57 -1.4
195,207 - LRK53_RS19025 0.57 +0.5
195,207 - LRK53_RS19025 0.57 -1.0
195,207 - LRK53_RS19025 0.57 -1.1
195,207 - LRK53_RS19025 0.57 +0.9
195,374 + LRK53_RS19025 0.87 -0.0
195,374 + LRK53_RS19025 0.87 -0.5
195,374 + LRK53_RS19025 0.87 -2.2
195,375 - LRK53_RS19025 0.87 -0.2
195,475 + -1.0
195,475 + +0.4
195,475 + -0.3
195,475 + -0.8
195,476 - -0.3
195,476 - +0.2
195,476 - +1.7
195,476 - -0.6
195,476 - -0.3
195,480 + -0.8
195,481 - +0.5
195,756 + -1.8
195,756 + +1.4
195,757 - +0.6
195,774 - -0.2
195,831 + -0.3
195,832 - +1.3
195,871 - LRK53_RS19035 0.11 +0.7
195,871 - LRK53_RS19035 0.11 +1.4
195,871 - LRK53_RS19035 0.11 +0.6
195,873 + LRK53_RS19035 0.12 +0.5
195,873 + LRK53_RS19035 0.12 +0.5
195,873 + LRK53_RS19035 0.12 -0.5
195,873 + LRK53_RS19035 0.12 -0.4
195,873 + LRK53_RS19035 0.12 -1.8
195,874 - LRK53_RS19035 0.12 -0.8
195,874 - LRK53_RS19035 0.12 -1.4
195,874 - LRK53_RS19035 0.12 -0.6
195,874 - LRK53_RS19035 0.12 -1.1
195,912 + LRK53_RS19035 0.16 +0.6
195,912 + LRK53_RS19035 0.16 -0.4
195,912 + LRK53_RS19035 0.16 -0.8
195,913 - LRK53_RS19035 0.16 -1.3
195,913 - LRK53_RS19035 0.16 -0.2
195,913 - LRK53_RS19035 0.16 +0.6
195,913 - LRK53_RS19035 0.16 +0.7
195,913 - LRK53_RS19035 0.16 +0.5
195,916 - LRK53_RS19035 0.16 -0.2
195,916 - LRK53_RS19035 0.16 +1.7
196,083 + LRK53_RS19035 0.35 -1.6
196,083 + LRK53_RS19035 0.35 +0.1
196,083 + LRK53_RS19035 0.35 -0.2
196,083 + LRK53_RS19035 0.35 +1.1
196,083 + LRK53_RS19035 0.35 -1.0
196,083 + LRK53_RS19035 0.35 -1.2
196,084 - LRK53_RS19035 0.35 -1.4
196,084 - LRK53_RS19035 0.35 +0.8
196,224 + LRK53_RS19035 0.50 -2.2
196,225 - LRK53_RS19035 0.50 -1.5
196,230 + LRK53_RS19035 0.51 +1.7
196,231 - LRK53_RS19035 0.51 +2.0
196,509 + LRK53_RS19035 0.82 +1.0
196,509 + LRK53_RS19035 0.82 +0.7
196,510 - LRK53_RS19035 0.82 +1.7
196,515 + LRK53_RS19035 0.82 -1.4
196,813 + LRK53_RS19040 0.14 -0.6
196,813 + LRK53_RS19040 0.14 -0.3
196,813 + LRK53_RS19040 0.14 +0.1
196,813 + LRK53_RS19040 0.14 -0.5
196,813 + LRK53_RS19040 0.14 -0.4
196,813 + LRK53_RS19040 0.14 -0.2
196,813 + LRK53_RS19040 0.14 -0.6
196,813 + LRK53_RS19040 0.14 +0.3
196,813 + LRK53_RS19040 0.14 -1.5
196,813 + LRK53_RS19040 0.14 -1.8
196,813 + LRK53_RS19040 0.14 +0.3
196,813 + LRK53_RS19040 0.14 -0.9
196,813 + LRK53_RS19040 0.14 -1.4
196,813 + LRK53_RS19040 0.14 -1.0
196,813 + LRK53_RS19040 0.14 -0.2
196,813 + LRK53_RS19040 0.14 -1.8
196,813 + LRK53_RS19040 0.14 +0.3
196,813 + LRK53_RS19040 0.14 +1.4
196,813 + LRK53_RS19040 0.14 +0.7
196,813 + LRK53_RS19040 0.14 +3.3
196,813 + LRK53_RS19040 0.14 -0.5
196,813 + LRK53_RS19040 0.14 -0.3
196,813 + LRK53_RS19040 0.14 -0.2
196,813 + LRK53_RS19040 0.14 +0.5
196,813 + LRK53_RS19040 0.14 -1.6
196,813 + LRK53_RS19040 0.14 -0.7
196,813 + LRK53_RS19040 0.14 +0.8
196,813 + LRK53_RS19040 0.14 -0.7
196,813 + LRK53_RS19040 0.14 -1.8
196,813 + LRK53_RS19040 0.14 +0.1
196,813 + LRK53_RS19040 0.14 -0.3
196,814 - LRK53_RS19040 0.14 +0.7
196,814 - LRK53_RS19040 0.14 -0.3
196,814 - LRK53_RS19040 0.14 -2.3
196,814 - LRK53_RS19040 0.14 +0.3
196,814 - LRK53_RS19040 0.14 -1.2
196,814 - LRK53_RS19040 0.14 -0.9
196,814 - LRK53_RS19040 0.14 +1.0
196,814 - LRK53_RS19040 0.14 -1.2
196,814 - LRK53_RS19040 0.14 +2.5
196,814 - LRK53_RS19040 0.14 +0.7
196,814 - LRK53_RS19040 0.14 -1.0
196,814 - LRK53_RS19040 0.14 -0.3
196,814 - LRK53_RS19040 0.14 -0.3
196,814 - LRK53_RS19040 0.14 -0.0
196,814 - LRK53_RS19040 0.14 -0.9
196,814 - LRK53_RS19040 0.14 +0.6
196,814 - LRK53_RS19040 0.14 +0.1
196,814 - LRK53_RS19040 0.14 +0.7
196,814 - LRK53_RS19040 0.14 +7.5
196,814 - LRK53_RS19040 0.14 +0.1
196,814 - LRK53_RS19040 0.14 +2.1
196,814 - LRK53_RS19040 0.14 +2.7
196,814 - LRK53_RS19040 0.14 +2.7
196,814 - LRK53_RS19040 0.14 +1.5
196,814 - LRK53_RS19040 0.14 +1.0
196,907 - LRK53_RS19040 0.39 -1.0
196,907 - LRK53_RS19040 0.39 -0.6
196,933 + LRK53_RS19040 0.46 -1.5
196,934 - LRK53_RS19040 0.46 -0.4
196,934 - LRK53_RS19040 0.46 -1.2
196,967 + LRK53_RS19040 0.55 +1.0
196,968 - LRK53_RS19040 0.55 +0.1
196,968 - LRK53_RS19040 0.55 -2.4
196,968 - LRK53_RS19040 0.55 +1.2
196,999 + LRK53_RS19040 0.63 +0.5
196,999 + LRK53_RS19040 0.63 -0.8
196,999 + LRK53_RS19040 0.63 +1.5
196,999 + LRK53_RS19040 0.63 -1.0
196,999 + LRK53_RS19040 0.63 -1.5
196,999 + LRK53_RS19040 0.63 -0.0
196,999 + LRK53_RS19040 0.63 +0.7
197,000 - LRK53_RS19040 0.63 +1.3
197,000 - LRK53_RS19040 0.63 +0.3
197,000 - LRK53_RS19040 0.63 -1.0
197,000 - LRK53_RS19040 0.63 -0.4
197,000 - LRK53_RS19040 0.63 -0.2
197,000 - LRK53_RS19040 0.63 -0.8
197,050 - LRK53_RS19040 0.76 -0.5
197,066 - LRK53_RS19040 0.81 +1.7
197,066 - LRK53_RS19040 0.81 -1.1
197,137 + +0.7
197,137 + -1.3
197,137 + -0.3
197,137 + +0.7
197,201 + -0.0
197,201 + -0.2
197,201 + +1.3
197,201 + +1.4
197,201 + -1.0
197,201 + -0.2
197,202 - -2.7
197,202 - +1.0
197,202 - +0.7
197,202 - +0.5
197,202 - -0.6
197,202 - -0.5
197,202 - +1.0
197,202 - +0.5
197,202 - -0.0
197,202 - -1.6
197,202 - -0.3
197,202 - +0.1
197,426 + LRK53_RS19045 0.25 -0.4
197,427 - LRK53_RS19045 0.25 -1.1
197,488 + LRK53_RS19045 0.33 +1.1
197,561 + LRK53_RS19045 0.41 +0.3
197,562 - LRK53_RS19045 0.41 -1.7
197,562 - LRK53_RS19045 0.41 +0.5
197,562 - LRK53_RS19045 0.41 -1.4
197,627 + LRK53_RS19045 0.49 -0.4
197,627 + LRK53_RS19045 0.49 +1.0
197,628 - LRK53_RS19045 0.49 -1.3

Or see this region's nucleotide sequence