Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19005 and LRK53_RS19010 overlap by 28 nucleotides LRK53_RS19010 and LRK53_RS19015 are separated by 266 nucleotides
LRK53_RS19005: LRK53_RS19005 - phosphoadenosine phosphosulfate reductase family protein, at 191,039 to 192,148
_RS19005
LRK53_RS19010: LRK53_RS19010 - hypothetical protein, at 192,121 to 193,170
_RS19010
LRK53_RS19015: LRK53_RS19015 - hypothetical protein, at 193,437 to 194,498
_RS19015
Position (kb) 192
193
194 Strain fitness (log2 ratio) -2
-1
0
1
2 at 191.363 kb on + strand, within LRK53_RS19005 at 191.363 kb on + strand, within LRK53_RS19005 at 191.363 kb on + strand, within LRK53_RS19005 at 191.363 kb on + strand, within LRK53_RS19005 at 191.364 kb on - strand, within LRK53_RS19005 at 191.364 kb on - strand, within LRK53_RS19005 at 191.451 kb on + strand, within LRK53_RS19005 at 191.452 kb on - strand, within LRK53_RS19005 at 191.675 kb on + strand, within LRK53_RS19005 at 191.777 kb on + strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 192.089 kb on + strand at 192.090 kb on - strand at 192.122 kb on + strand at 192.122 kb on + strand at 192.122 kb on + strand at 192.122 kb on + strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.146 kb on + strand at 192.146 kb on + strand at 192.146 kb on + strand at 192.147 kb on - strand at 192.147 kb on - strand at 192.147 kb on - strand at 192.147 kb on - strand at 192.149 kb on + strand at 192.150 kb on - strand at 192.150 kb on - strand at 192.150 kb on - strand at 192.245 kb on + strand, within LRK53_RS19010 at 192.245 kb on + strand, within LRK53_RS19010 at 192.388 kb on + strand, within LRK53_RS19010 at 192.388 kb on + strand, within LRK53_RS19010 at 192.389 kb on - strand, within LRK53_RS19010 at 192.480 kb on - strand, within LRK53_RS19010 at 192.480 kb on - strand, within LRK53_RS19010 at 192.550 kb on + strand, within LRK53_RS19010 at 192.720 kb on + strand, within LRK53_RS19010 at 192.720 kb on + strand, within LRK53_RS19010 at 192.720 kb on + strand, within LRK53_RS19010 at 192.721 kb on - strand, within LRK53_RS19010 at 192.721 kb on - strand, within LRK53_RS19010 at 192.747 kb on + strand, within LRK53_RS19010 at 192.747 kb on + strand, within LRK53_RS19010 at 192.747 kb on + strand, within LRK53_RS19010 at 192.748 kb on - strand, within LRK53_RS19010 at 192.748 kb on - strand, within LRK53_RS19010 at 192.797 kb on + strand, within LRK53_RS19010 at 192.819 kb on - strand, within LRK53_RS19010 at 192.819 kb on - strand, within LRK53_RS19010 at 192.836 kb on + strand, within LRK53_RS19010 at 192.858 kb on - strand, within LRK53_RS19010 at 192.858 kb on - strand, within LRK53_RS19010 at 192.860 kb on + strand, within LRK53_RS19010 at 192.860 kb on + strand, within LRK53_RS19010 at 192.863 kb on + strand, within LRK53_RS19010 at 192.863 kb on + strand, within LRK53_RS19010 at 192.863 kb on + strand, within LRK53_RS19010 at 192.864 kb on - strand, within LRK53_RS19010 at 192.864 kb on - strand, within LRK53_RS19010 at 192.878 kb on + strand, within LRK53_RS19010 at 192.878 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.938 kb on + strand, within LRK53_RS19010 at 192.938 kb on + strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.962 kb on - strand, within LRK53_RS19010 at 193.011 kb on - strand, within LRK53_RS19010 at 193.139 kb on + strand at 193.140 kb on - strand at 193.209 kb on + strand at 193.209 kb on + strand at 193.209 kb on + strand at 193.210 kb on - strand at 193.210 kb on - strand at 193.210 kb on - strand at 194.042 kb on - strand, within LRK53_RS19015 at 194.049 kb on + strand, within LRK53_RS19015 at 194.050 kb on - strand, within LRK53_RS19015
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 191,363 + LRK53_RS19005 0.29 -0.2 191,363 + LRK53_RS19005 0.29 -1.2 191,363 + LRK53_RS19005 0.29 -1.0 191,363 + LRK53_RS19005 0.29 +1.1 191,364 - LRK53_RS19005 0.29 +0.3 191,364 - LRK53_RS19005 0.29 -0.2 191,451 + LRK53_RS19005 0.37 +0.2 191,452 - LRK53_RS19005 0.37 -0.9 191,675 + LRK53_RS19005 0.57 -0.8 191,777 + LRK53_RS19005 0.66 -0.4 191,778 - LRK53_RS19005 0.67 +0.5 191,778 - LRK53_RS19005 0.67 -0.5 191,778 - LRK53_RS19005 0.67 -2.0 191,778 - LRK53_RS19005 0.67 -2.0 192,089 + +2.7 192,090 - -1.0 192,122 + +0.1 192,122 + +0.7 192,122 + -1.4 192,122 + -0.3 192,123 - -2.1 192,123 - +0.3 192,123 - -0.2 192,123 - +0.3 192,123 - -0.4 192,123 - -0.4 192,146 + +0.5 192,146 + -0.5 192,146 + +0.5 192,147 - -1.6 192,147 - +2.7 192,147 - +1.0 192,147 - -0.7 192,149 + -0.5 192,150 - +1.7 192,150 - -0.0 192,150 - +0.1 192,245 + LRK53_RS19010 0.12 +0.4 192,245 + LRK53_RS19010 0.12 -0.3 192,388 + LRK53_RS19010 0.25 -1.4 192,388 + LRK53_RS19010 0.25 -0.5 192,389 - LRK53_RS19010 0.26 +0.7 192,480 - LRK53_RS19010 0.34 +0.1 192,480 - LRK53_RS19010 0.34 -0.6 192,550 + LRK53_RS19010 0.41 -0.3 192,720 + LRK53_RS19010 0.57 -0.1 192,720 + LRK53_RS19010 0.57 -1.4 192,720 + LRK53_RS19010 0.57 +0.3 192,721 - LRK53_RS19010 0.57 +0.7 192,721 - LRK53_RS19010 0.57 +1.3 192,747 + LRK53_RS19010 0.60 -1.9 192,747 + LRK53_RS19010 0.60 -0.2 192,747 + LRK53_RS19010 0.60 -1.9 192,748 - LRK53_RS19010 0.60 +1.9 192,748 - LRK53_RS19010 0.60 -1.0 192,797 + LRK53_RS19010 0.64 +1.0 192,819 - LRK53_RS19010 0.66 -0.4 192,819 - LRK53_RS19010 0.66 +1.0 192,836 + LRK53_RS19010 0.68 -0.2 192,858 - LRK53_RS19010 0.70 +1.0 192,858 - LRK53_RS19010 0.70 +0.4 192,860 + LRK53_RS19010 0.70 -0.6 192,860 + LRK53_RS19010 0.70 -1.0 192,863 + LRK53_RS19010 0.71 +2.0 192,863 + LRK53_RS19010 0.71 +0.3 192,863 + LRK53_RS19010 0.71 -0.8 192,864 - LRK53_RS19010 0.71 +0.3 192,864 - LRK53_RS19010 0.71 -0.2 192,878 + LRK53_RS19010 0.72 -0.5 192,878 + LRK53_RS19010 0.72 -0.5 192,923 + LRK53_RS19010 0.76 +1.8 192,923 + LRK53_RS19010 0.76 -0.2 192,923 + LRK53_RS19010 0.76 -0.3 192,923 + LRK53_RS19010 0.76 +2.1 192,924 - LRK53_RS19010 0.76 +1.5 192,924 - LRK53_RS19010 0.76 -0.9 192,924 - LRK53_RS19010 0.76 -1.1 192,924 - LRK53_RS19010 0.76 -1.5 192,924 - LRK53_RS19010 0.76 +1.5 192,924 - LRK53_RS19010 0.76 -0.5 192,924 - LRK53_RS19010 0.76 +0.5 192,924 - LRK53_RS19010 0.76 -1.2 192,924 - LRK53_RS19010 0.76 -0.2 192,938 + LRK53_RS19010 0.78 -0.0 192,938 + LRK53_RS19010 0.78 -1.0 192,939 - LRK53_RS19010 0.78 -1.9 192,939 - LRK53_RS19010 0.78 -1.1 192,939 - LRK53_RS19010 0.78 -0.5 192,939 - LRK53_RS19010 0.78 +0.1 192,939 - LRK53_RS19010 0.78 +0.1 192,962 - LRK53_RS19010 0.80 +2.7 193,011 - LRK53_RS19010 0.85 -0.6 193,139 + -0.4 193,140 - +0.9 193,209 + -0.3 193,209 + -0.8 193,209 + -1.0 193,210 - -1.7 193,210 - -0.3 193,210 - -1.6 194,042 - LRK53_RS19015 0.57 +0.7 194,049 + LRK53_RS19015 0.58 +0.3 194,050 - LRK53_RS19015 0.58 -0.4
Or see this region's nucleotide sequence