Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18695 and LRK53_RS18700 are separated by 97 nucleotides LRK53_RS18700 and LRK53_RS18705 are separated by 147 nucleotides LRK53_RS18705 and LRK53_RS18710 are separated by 90 nucleotides
LRK53_RS18695: LRK53_RS18695 - hypothetical protein, at 127,024 to 127,788
_RS18695
LRK53_RS18700: LRK53_RS18700 - H-NS histone family protein, at 127,886 to 128,320
_RS18700
LRK53_RS18705: LRK53_RS18705 - hypothetical protein, at 128,468 to 129,379
_RS18705
LRK53_RS18710: LRK53_RS18710 - DNA-binding protein, at 129,470 to 131,188
_RS18710
Position (kb) 128
129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 127.523 kb on + strand, within LRK53_RS18695 at 127.523 kb on + strand, within LRK53_RS18695 at 127.524 kb on - strand, within LRK53_RS18695 at 127.524 kb on - strand, within LRK53_RS18695 at 127.635 kb on + strand, within LRK53_RS18695 at 127.636 kb on - strand, within LRK53_RS18695 at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.821 kb on + strand at 127.826 kb on + strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.830 kb on - strand at 127.880 kb on + strand at 127.880 kb on + strand at 127.881 kb on - strand at 127.881 kb on - strand at 127.936 kb on - strand, within LRK53_RS18700 at 127.936 kb on - strand, within LRK53_RS18700 at 128.108 kb on + strand, within LRK53_RS18700 at 128.109 kb on - strand, within LRK53_RS18700 at 128.221 kb on + strand, within LRK53_RS18700 at 128.318 kb on + strand at 128.318 kb on + strand at 128.318 kb on + strand at 128.318 kb on + strand at 128.319 kb on - strand at 128.319 kb on - strand at 128.319 kb on - strand at 128.319 kb on - strand at 128.413 kb on + strand at 128.413 kb on + strand at 128.413 kb on + strand at 128.413 kb on + strand at 128.414 kb on - strand at 128.414 kb on - strand at 128.414 kb on - strand at 128.498 kb on + strand at 128.498 kb on + strand at 128.498 kb on + strand at 128.499 kb on - strand at 128.540 kb on + strand at 128.540 kb on + strand at 128.540 kb on + strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.700 kb on + strand, within LRK53_RS18705 at 128.700 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.909 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 129.006 kb on - strand, within LRK53_RS18705 at 129.041 kb on + strand, within LRK53_RS18705 at 129.041 kb on + strand, within LRK53_RS18705 at 129.169 kb on - strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.173 kb on - strand, within LRK53_RS18705 at 129.412 kb on - strand at 129.412 kb on - strand at 130.368 kb on + strand, within LRK53_RS18710 at 130.368 kb on + strand, within LRK53_RS18710
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 127,523 + LRK53_RS18695 0.65 +0.7 127,523 + LRK53_RS18695 0.65 +1.0 127,524 - LRK53_RS18695 0.65 -1.3 127,524 - LRK53_RS18695 0.65 +1.9 127,635 + LRK53_RS18695 0.80 -0.2 127,636 - LRK53_RS18695 0.80 -0.4 127,788 + -0.6 127,788 + +0.2 127,788 + -0.5 127,788 + +0.3 127,788 + +3.3 127,788 + +0.2 127,788 + -0.4 127,788 + +2.1 127,788 + +0.7 127,788 + +0.3 127,788 + +0.5 127,788 + -1.5 127,788 + +0.1 127,788 + -2.8 127,788 + -0.5 127,789 - +0.9 127,789 - -1.7 127,789 - -0.9 127,789 - -1.6 127,789 - +0.1 127,789 - +2.0 127,789 - +1.0 127,789 - +1.0 127,789 - -0.9 127,789 - +1.3 127,789 - -1.4 127,789 - -1.6 127,789 - -1.9 127,789 - +0.1 127,789 - -0.8 127,789 - -0.4 127,789 - +0.3 127,821 + +2.8 127,826 + -1.7 127,827 - -0.9 127,827 - -1.8 127,827 - +1.3 127,827 - -1.6 127,827 - +0.3 127,830 - +0.1 127,880 + -2.1 127,880 + -1.2 127,881 - -1.2 127,881 - +0.5 127,936 - LRK53_RS18700 0.11 -1.5 127,936 - LRK53_RS18700 0.11 +0.0 128,108 + LRK53_RS18700 0.51 -0.6 128,109 - LRK53_RS18700 0.51 -0.5 128,221 + LRK53_RS18700 0.77 -0.5 128,318 + -1.5 128,318 + -1.5 128,318 + -1.0 128,318 + -2.3 128,319 - +0.1 128,319 - -1.3 128,319 - -0.0 128,319 - +0.5 128,413 + -0.9 128,413 + -0.3 128,413 + +0.8 128,413 + -1.5 128,414 - +0.5 128,414 - -0.6 128,414 - -0.2 128,498 + -1.2 128,498 + -2.0 128,498 + +0.7 128,499 - -2.6 128,540 + +1.5 128,540 + +0.3 128,540 + +2.3 128,541 - +0.7 128,541 - -1.3 128,541 - +1.0 128,541 - -0.3 128,541 - -0.0 128,629 + LRK53_RS18705 0.18 +1.3 128,629 + LRK53_RS18705 0.18 +0.2 128,629 + LRK53_RS18705 0.18 -0.5 128,629 + LRK53_RS18705 0.18 -1.7 128,629 + LRK53_RS18705 0.18 -0.6 128,629 + LRK53_RS18705 0.18 +1.0 128,629 + LRK53_RS18705 0.18 +0.5 128,629 + LRK53_RS18705 0.18 -1.5 128,630 - LRK53_RS18705 0.18 +1.5 128,630 - LRK53_RS18705 0.18 +1.0 128,630 - LRK53_RS18705 0.18 -1.7 128,630 - LRK53_RS18705 0.18 -0.2 128,630 - LRK53_RS18705 0.18 +0.5 128,630 - LRK53_RS18705 0.18 -0.2 128,700 + LRK53_RS18705 0.25 +0.3 128,700 + LRK53_RS18705 0.25 -1.0 128,728 + LRK53_RS18705 0.29 -0.5 128,728 + LRK53_RS18705 0.29 -2.0 128,728 + LRK53_RS18705 0.29 +0.7 128,728 + LRK53_RS18705 0.29 -0.2 128,728 + LRK53_RS18705 0.29 -0.2 128,728 + LRK53_RS18705 0.29 +0.3 128,728 + LRK53_RS18705 0.29 +0.3 128,728 + LRK53_RS18705 0.29 +0.5 128,729 - LRK53_RS18705 0.29 -0.3 128,729 - LRK53_RS18705 0.29 -0.0 128,729 - LRK53_RS18705 0.29 -0.2 128,729 - LRK53_RS18705 0.29 +0.8 128,729 - LRK53_RS18705 0.29 -1.7 128,909 + LRK53_RS18705 0.48 +2.0 128,929 + LRK53_RS18705 0.51 -0.5 128,929 + LRK53_RS18705 0.51 -1.5 128,929 + LRK53_RS18705 0.51 +0.7 128,929 + LRK53_RS18705 0.51 -1.0 128,929 + LRK53_RS18705 0.51 +0.3 128,929 + LRK53_RS18705 0.51 -0.5 128,929 + LRK53_RS18705 0.51 +1.3 128,930 - LRK53_RS18705 0.51 +0.4 128,930 - LRK53_RS18705 0.51 +0.3 128,930 - LRK53_RS18705 0.51 -1.0 128,930 - LRK53_RS18705 0.51 -1.7 128,930 - LRK53_RS18705 0.51 -1.9 129,006 - LRK53_RS18705 0.59 +0.8 129,041 + LRK53_RS18705 0.63 -2.0 129,041 + LRK53_RS18705 0.63 +0.2 129,169 - LRK53_RS18705 0.77 +0.8 129,172 + LRK53_RS18705 0.77 -1.4 129,172 + LRK53_RS18705 0.77 -2.0 129,172 + LRK53_RS18705 0.77 +0.3 129,172 + LRK53_RS18705 0.77 +0.5 129,173 - LRK53_RS18705 0.77 +0.6 129,412 - -0.2 129,412 - -2.5 130,368 + LRK53_RS18710 0.52 -1.4 130,368 + LRK53_RS18710 0.52 -0.0
Or see this region's nucleotide sequence