Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18435 and LRK53_RS18440 are separated by 262 nucleotides LRK53_RS18440 and LRK53_RS18445 are separated by 127 nucleotides LRK53_RS18445 and LRK53_RS18450 are separated by 5 nucleotides LRK53_RS18450 and LRK53_RS18455 are separated by 30 nucleotides
LRK53_RS18435: LRK53_RS18435 - replicative DNA helicase, at 61,984 to 63,387
_RS18435
LRK53_RS18440: LRK53_RS18440 - hypothetical protein, at 63,650 to 64,222
_RS18440
LRK53_RS18445: LRK53_RS18445 - hypothetical protein, at 64,350 to 64,673
_RS18445
LRK53_RS18450: LRK53_RS18450 - hypothetical protein, at 64,679 to 64,990
_RS18450
LRK53_RS18455: LRK53_RS18455 - DUF3761 domain-containing protein, at 65,021 to 65,623
_RS18455
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 63.461 kb on + strand at 63.461 kb on + strand at 63.461 kb on + strand at 63.461 kb on + strand at 63.462 kb on - strand at 63.493 kb on + strand at 63.523 kb on + strand at 63.523 kb on + strand at 63.596 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.678 kb on + strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.679 kb on - strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.680 kb on + strand at 63.681 kb on - strand at 63.681 kb on - strand at 63.681 kb on - strand at 63.681 kb on - strand at 63.908 kb on + strand, within LRK53_RS18440 at 63.908 kb on + strand, within LRK53_RS18440 at 63.908 kb on + strand, within LRK53_RS18440 at 63.908 kb on + strand, within LRK53_RS18440 at 63.909 kb on - strand, within LRK53_RS18440 at 63.909 kb on - strand, within LRK53_RS18440 at 63.909 kb on - strand, within LRK53_RS18440 at 63.909 kb on - strand, within LRK53_RS18440 at 63.920 kb on + strand, within LRK53_RS18440 at 63.920 kb on + strand, within LRK53_RS18440 at 63.921 kb on - strand, within LRK53_RS18440 at 63.921 kb on - strand, within LRK53_RS18440 at 64.058 kb on + strand, within LRK53_RS18440 at 64.094 kb on + strand, within LRK53_RS18440 at 64.095 kb on - strand, within LRK53_RS18440 at 64.095 kb on - strand, within LRK53_RS18440 at 64.095 kb on - strand, within LRK53_RS18440 at 64.095 kb on - strand, within LRK53_RS18440 at 64.254 kb on - strand at 64.290 kb on - strand at 64.364 kb on - strand at 64.366 kb on + strand at 64.366 kb on + strand at 64.366 kb on + strand at 64.367 kb on - strand at 64.367 kb on - strand at 64.367 kb on - strand at 64.367 kb on - strand at 64.419 kb on + strand, within LRK53_RS18445 at 64.419 kb on + strand, within LRK53_RS18445 at 64.420 kb on - strand, within LRK53_RS18445 at 64.537 kb on - strand, within LRK53_RS18445 at 64.750 kb on + strand, within LRK53_RS18450 at 64.751 kb on - strand, within LRK53_RS18450 at 64.868 kb on + strand, within LRK53_RS18450 at 64.868 kb on + strand, within LRK53_RS18450 at 64.868 kb on + strand, within LRK53_RS18450 at 64.868 kb on + strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.869 kb on - strand, within LRK53_RS18450 at 64.895 kb on + strand, within LRK53_RS18450 at 64.895 kb on + strand, within LRK53_RS18450 at 64.896 kb on - strand, within LRK53_RS18450 at 64.896 kb on - strand, within LRK53_RS18450 at 65.020 kb on + strand at 65.020 kb on + strand at 65.020 kb on + strand at 65.020 kb on + strand at 65.021 kb on - strand at 65.021 kb on - strand at 65.021 kb on - strand at 65.180 kb on + strand, within LRK53_RS18455 at 65.180 kb on + strand, within LRK53_RS18455 at 65.180 kb on + strand, within LRK53_RS18455 at 65.180 kb on + strand, within LRK53_RS18455 at 65.181 kb on - strand, within LRK53_RS18455 at 65.393 kb on + strand, within LRK53_RS18455 at 65.393 kb on + strand, within LRK53_RS18455 at 65.393 kb on + strand, within LRK53_RS18455 at 65.394 kb on - strand, within LRK53_RS18455 at 65.394 kb on - strand, within LRK53_RS18455 at 65.394 kb on - strand, within LRK53_RS18455 at 65.473 kb on + strand, within LRK53_RS18455 at 65.473 kb on + strand, within LRK53_RS18455 at 65.473 kb on + strand, within LRK53_RS18455 at 65.473 kb on + strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.474 kb on - strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.525 kb on + strand, within LRK53_RS18455 at 65.526 kb on - strand, within LRK53_RS18455 at 65.526 kb on - strand, within LRK53_RS18455 at 65.526 kb on - strand, within LRK53_RS18455 at 65.526 kb on - strand, within LRK53_RS18455 at 65.644 kb on + strand at 65.644 kb on + strand at 65.644 kb on + strand at 65.644 kb on + strand at 65.647 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 63,461 + +0.7 63,461 + +0.0 63,461 + +1.2 63,461 + +0.1 63,462 - -0.7 63,493 + +1.7 63,523 + -0.4 63,523 + -0.4 63,596 + +1.1 63,678 + -1.7 63,678 + -1.6 63,678 + +0.8 63,678 + +1.5 63,678 + -0.4 63,678 + -0.3 63,678 + +0.5 63,678 + -1.0 63,678 + +0.0 63,678 + +3.3 63,678 + +0.7 63,679 - +0.1 63,679 - +0.9 63,679 - -0.2 63,679 - +0.1 63,679 - -1.3 63,679 - +1.7 63,679 - -0.2 63,679 - +0.6 63,679 - +0.7 63,680 + -1.4 63,680 + +1.3 63,680 + +0.7 63,680 + -0.0 63,680 + -0.9 63,680 + +1.0 63,680 + +0.1 63,680 + -1.9 63,680 + +3.3 63,681 - -0.4 63,681 - -0.4 63,681 - -1.4 63,681 - -0.3 63,908 + LRK53_RS18440 0.45 +0.1 63,908 + LRK53_RS18440 0.45 +0.5 63,908 + LRK53_RS18440 0.45 -0.2 63,908 + LRK53_RS18440 0.45 -0.3 63,909 - LRK53_RS18440 0.45 -1.9 63,909 - LRK53_RS18440 0.45 -0.6 63,909 - LRK53_RS18440 0.45 +1.7 63,909 - LRK53_RS18440 0.45 -1.2 63,920 + LRK53_RS18440 0.47 +1.6 63,920 + LRK53_RS18440 0.47 -0.7 63,921 - LRK53_RS18440 0.47 +0.7 63,921 - LRK53_RS18440 0.47 +0.3 64,058 + LRK53_RS18440 0.71 -0.0 64,094 + LRK53_RS18440 0.77 +0.7 64,095 - LRK53_RS18440 0.78 +1.1 64,095 - LRK53_RS18440 0.78 -1.0 64,095 - LRK53_RS18440 0.78 -0.8 64,095 - LRK53_RS18440 0.78 -1.4 64,254 - -0.3 64,290 - +0.3 64,364 - -1.3 64,366 + -0.9 64,366 + -0.3 64,366 + +1.0 64,367 - +0.4 64,367 - -1.4 64,367 - +0.5 64,367 - -0.2 64,419 + LRK53_RS18445 0.21 -1.3 64,419 + LRK53_RS18445 0.21 -0.8 64,420 - LRK53_RS18445 0.22 +0.5 64,537 - LRK53_RS18445 0.58 -1.5 64,750 + LRK53_RS18450 0.23 +0.7 64,751 - LRK53_RS18450 0.23 -1.6 64,868 + LRK53_RS18450 0.61 -1.1 64,868 + LRK53_RS18450 0.61 -1.1 64,868 + LRK53_RS18450 0.61 +0.8 64,868 + LRK53_RS18450 0.61 -0.0 64,869 - LRK53_RS18450 0.61 -0.8 64,869 - LRK53_RS18450 0.61 +0.1 64,869 - LRK53_RS18450 0.61 -0.3 64,869 - LRK53_RS18450 0.61 +4.1 64,869 - LRK53_RS18450 0.61 -0.7 64,869 - LRK53_RS18450 0.61 +1.0 64,895 + LRK53_RS18450 0.69 -2.5 64,895 + LRK53_RS18450 0.69 -0.3 64,896 - LRK53_RS18450 0.70 +0.1 64,896 - LRK53_RS18450 0.70 -0.2 65,020 + +0.5 65,020 + -0.6 65,020 + +0.3 65,020 + -2.0 65,021 - -2.4 65,021 - +1.3 65,021 - -1.6 65,180 + LRK53_RS18455 0.26 -0.9 65,180 + LRK53_RS18455 0.26 +1.3 65,180 + LRK53_RS18455 0.26 -0.4 65,180 + LRK53_RS18455 0.26 -0.3 65,181 - LRK53_RS18455 0.27 +2.1 65,393 + LRK53_RS18455 0.62 -0.5 65,393 + LRK53_RS18455 0.62 +0.7 65,393 + LRK53_RS18455 0.62 +0.5 65,394 - LRK53_RS18455 0.62 +2.3 65,394 - LRK53_RS18455 0.62 +0.4 65,394 - LRK53_RS18455 0.62 -1.0 65,473 + LRK53_RS18455 0.75 +0.3 65,473 + LRK53_RS18455 0.75 -1.1 65,473 + LRK53_RS18455 0.75 -0.4 65,473 + LRK53_RS18455 0.75 +2.3 65,474 - LRK53_RS18455 0.75 +2.3 65,474 - LRK53_RS18455 0.75 +0.7 65,474 - LRK53_RS18455 0.75 -2.6 65,474 - LRK53_RS18455 0.75 -1.3 65,474 - LRK53_RS18455 0.75 +0.5 65,474 - LRK53_RS18455 0.75 +0.2 65,525 + LRK53_RS18455 0.84 +0.7 65,525 + LRK53_RS18455 0.84 -1.0 65,525 + LRK53_RS18455 0.84 -0.7 65,525 + LRK53_RS18455 0.84 -0.3 65,525 + LRK53_RS18455 0.84 -1.4 65,525 + LRK53_RS18455 0.84 -2.4 65,525 + LRK53_RS18455 0.84 +0.3 65,525 + LRK53_RS18455 0.84 -1.3 65,525 + LRK53_RS18455 0.84 +0.5 65,526 - LRK53_RS18455 0.84 +1.3 65,526 - LRK53_RS18455 0.84 -0.0 65,526 - LRK53_RS18455 0.84 +0.7 65,526 - LRK53_RS18455 0.84 -0.5 65,644 + +0.7 65,644 + +0.7 65,644 + +0.1 65,644 + +3.3 65,647 + -0.7
Or see this region's nucleotide sequence