Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS16140 and LRK53_RS16145 are separated by 861 nucleotides LRK53_RS16145 and LRK53_RS16150 are separated by 115 nucleotides
LRK53_RS16140: LRK53_RS16140 - 50S ribosome-binding GTPase, at 3,550,555 to 3,552,015
_RS16140
LRK53_RS16145: LRK53_RS16145 - dienelactone hydrolase family protein, at 3,552,877 to 3,553,671
_RS16145
LRK53_RS16150: LRK53_RS16150 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase, at 3,553,787 to 3,555,091
_RS16150
Position (kb)
3552
3553
3554 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.103 kb on - strand at 3552.383 kb on + strand at 3552.383 kb on + strand at 3552.383 kb on + strand at 3552.383 kb on + strand at 3552.384 kb on - strand at 3552.384 kb on - strand at 3552.384 kb on - strand at 3552.384 kb on - strand at 3552.384 kb on - strand at 3552.563 kb on + strand at 3552.663 kb on + strand at 3552.663 kb on + strand at 3552.663 kb on + strand at 3552.663 kb on + strand at 3552.663 kb on + strand at 3552.663 kb on + strand at 3552.878 kb on + strand at 3552.878 kb on + strand at 3552.878 kb on + strand at 3552.878 kb on + strand at 3552.878 kb on + strand at 3552.878 kb on + strand at 3552.878 kb on + strand at 3552.878 kb on + strand at 3552.878 kb on + strand at 3552.878 kb on + strand at 3552.879 kb on - strand at 3552.879 kb on - strand at 3552.879 kb on - strand at 3552.879 kb on - strand at 3552.926 kb on + strand at 3552.927 kb on - strand at 3553.125 kb on + strand, within LRK53_RS16145 at 3553.126 kb on - strand, within LRK53_RS16145 at 3553.126 kb on - strand, within LRK53_RS16145 at 3553.126 kb on - strand, within LRK53_RS16145 at 3553.346 kb on + strand, within LRK53_RS16145 at 3553.346 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.412 kb on + strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.413 kb on - strand, within LRK53_RS16145 at 3553.436 kb on + strand, within LRK53_RS16145 at 3553.436 kb on + strand, within LRK53_RS16145 at 3553.436 kb on + strand, within LRK53_RS16145 at 3553.436 kb on + strand, within LRK53_RS16145 at 3553.436 kb on + strand, within LRK53_RS16145 at 3553.436 kb on + strand, within LRK53_RS16145 at 3553.436 kb on + strand, within LRK53_RS16145 at 3553.437 kb on - strand, within LRK53_RS16145 at 3553.437 kb on - strand, within LRK53_RS16145 at 3553.437 kb on - strand, within LRK53_RS16145 at 3553.490 kb on + strand, within LRK53_RS16145 at 3553.490 kb on + strand, within LRK53_RS16145 at 3553.491 kb on - strand, within LRK53_RS16145 at 3553.491 kb on - strand, within LRK53_RS16145 at 3553.491 kb on - strand, within LRK53_RS16145 at 3553.491 kb on - strand, within LRK53_RS16145 at 3553.552 kb on + strand, within LRK53_RS16145 at 3553.552 kb on + strand, within LRK53_RS16145 at 3553.552 kb on + strand, within LRK53_RS16145 at 3553.552 kb on + strand, within LRK53_RS16145 at 3553.552 kb on + strand, within LRK53_RS16145 at 3553.552 kb on + strand, within LRK53_RS16145 at 3553.552 kb on + strand, within LRK53_RS16145 at 3553.552 kb on + strand, within LRK53_RS16145 at 3553.552 kb on + strand, within LRK53_RS16145 at 3553.553 kb on - strand, within LRK53_RS16145 at 3553.553 kb on - strand, within LRK53_RS16145
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 3,552,103 - +0.4 3,552,103 - -2.0 3,552,103 - -0.4 3,552,103 - -2.5 3,552,103 - -1.3 3,552,103 - +0.7 3,552,103 - -1.2 3,552,103 - -0.7 3,552,103 - -1.2 3,552,103 - -1.8 3,552,103 - -1.0 3,552,103 - -1.3 3,552,383 + +1.7 3,552,383 + -1.6 3,552,383 + -0.4 3,552,383 + -1.2 3,552,384 - -1.5 3,552,384 - -1.6 3,552,384 - -1.2 3,552,384 - +0.4 3,552,384 - +0.4 3,552,563 + -0.0 3,552,663 + -0.9 3,552,663 + -1.0 3,552,663 + -3.6 3,552,663 + +1.6 3,552,663 + +1.0 3,552,663 + -1.8 3,552,878 + -0.4 3,552,878 + -1.2 3,552,878 + -1.6 3,552,878 + -2.0 3,552,878 + -0.4 3,552,878 + +0.2 3,552,878 + +2.7 3,552,878 + -1.3 3,552,878 + -1.4 3,552,878 + +0.8 3,552,879 - +0.6 3,552,879 - +0.2 3,552,879 - -0.5 3,552,879 - -2.2 3,552,926 + -0.6 3,552,927 - -1.3 3,553,125 + LRK53_RS16145 0.31 +0.2 3,553,126 - LRK53_RS16145 0.31 -0.8 3,553,126 - LRK53_RS16145 0.31 +0.4 3,553,126 - LRK53_RS16145 0.31 -0.7 3,553,346 + LRK53_RS16145 0.59 -0.4 3,553,346 + LRK53_RS16145 0.59 -1.0 3,553,412 + LRK53_RS16145 0.67 -0.3 3,553,412 + LRK53_RS16145 0.67 -0.5 3,553,412 + LRK53_RS16145 0.67 -1.6 3,553,412 + LRK53_RS16145 0.67 -3.0 3,553,412 + LRK53_RS16145 0.67 +1.4 3,553,412 + LRK53_RS16145 0.67 -0.7 3,553,412 + LRK53_RS16145 0.67 +0.4 3,553,412 + LRK53_RS16145 0.67 -0.7 3,553,412 + LRK53_RS16145 0.67 -1.0 3,553,412 + LRK53_RS16145 0.67 -0.0 3,553,412 + LRK53_RS16145 0.67 -1.2 3,553,412 + LRK53_RS16145 0.67 -0.5 3,553,412 + LRK53_RS16145 0.67 -3.0 3,553,412 + LRK53_RS16145 0.67 -1.2 3,553,412 + LRK53_RS16145 0.67 -0.5 3,553,413 - LRK53_RS16145 0.67 +1.4 3,553,413 - LRK53_RS16145 0.67 -0.5 3,553,413 - LRK53_RS16145 0.67 -1.3 3,553,413 - LRK53_RS16145 0.67 +0.2 3,553,413 - LRK53_RS16145 0.67 -0.5 3,553,413 - LRK53_RS16145 0.67 -2.7 3,553,413 - LRK53_RS16145 0.67 -0.6 3,553,413 - LRK53_RS16145 0.67 -0.8 3,553,413 - LRK53_RS16145 0.67 -1.5 3,553,413 - LRK53_RS16145 0.67 -0.5 3,553,413 - LRK53_RS16145 0.67 +1.4 3,553,436 + LRK53_RS16145 0.70 -1.0 3,553,436 + LRK53_RS16145 0.70 -1.1 3,553,436 + LRK53_RS16145 0.70 -2.7 3,553,436 + LRK53_RS16145 0.70 +1.1 3,553,436 + LRK53_RS16145 0.70 +1.2 3,553,436 + LRK53_RS16145 0.70 +0.9 3,553,436 + LRK53_RS16145 0.70 +0.4 3,553,437 - LRK53_RS16145 0.70 +0.2 3,553,437 - LRK53_RS16145 0.70 -1.0 3,553,437 - LRK53_RS16145 0.70 -0.7 3,553,490 + LRK53_RS16145 0.77 -2.7 3,553,490 + LRK53_RS16145 0.77 -0.0 3,553,491 - LRK53_RS16145 0.77 -0.6 3,553,491 - LRK53_RS16145 0.77 -1.2 3,553,491 - LRK53_RS16145 0.77 +0.5 3,553,491 - LRK53_RS16145 0.77 -1.3 3,553,552 + LRK53_RS16145 0.85 -2.9 3,553,552 + LRK53_RS16145 0.85 -1.3 3,553,552 + LRK53_RS16145 0.85 -1.5 3,553,552 + LRK53_RS16145 0.85 +0.4 3,553,552 + LRK53_RS16145 0.85 -1.1 3,553,552 + LRK53_RS16145 0.85 +0.2 3,553,552 + LRK53_RS16145 0.85 -1.0 3,553,552 + LRK53_RS16145 0.85 -0.2 3,553,552 + LRK53_RS16145 0.85 -2.4 3,553,553 - LRK53_RS16145 0.85 -2.9 3,553,553 - LRK53_RS16145 0.85 -1.4
Or see this region's nucleotide sequence