Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15375

Experiment: planktonic; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM;
3,356,982	+		LRK53_RS15370	0.18	-1.9
3,356,982	+		LRK53_RS15370	0.18	-0.3
3,356,982	+		LRK53_RS15370	0.18	-1.9
3,356,982	+		LRK53_RS15370	0.18	-0.2
3,356,983	-		LRK53_RS15370	0.18	+1.6
3,357,049	+		LRK53_RS15370	0.23	-1.6
3,357,050	-		LRK53_RS15370	0.24	-2.3
3,357,092	-		LRK53_RS15370	0.27	-0.4
3,357,154	+		LRK53_RS15370	0.32	-0.4
3,357,154	+		LRK53_RS15370	0.32	+0.1
3,357,154	+		LRK53_RS15370	0.32	+0.9
3,357,155	-		LRK53_RS15370	0.32	-2.1
3,357,155	-		LRK53_RS15370	0.32	-0.9
3,357,155	-		LRK53_RS15370	0.32	-2.6
3,357,155	-		LRK53_RS15370	0.32	-1.5
3,357,155	-		LRK53_RS15370	0.32	-0.3
3,357,245	+		LRK53_RS15370	0.40	-0.3
3,357,245	+		LRK53_RS15370	0.40	+0.0
3,357,245	+		LRK53_RS15370	0.40	-0.2
3,357,245	+		LRK53_RS15370	0.40	-2.2
3,357,349	+		LRK53_RS15370	0.48	+0.3
3,357,349	+		LRK53_RS15370	0.48	-0.9
3,357,349	+		LRK53_RS15370	0.48	-3.7
3,357,349	+		LRK53_RS15370	0.48	-2.2
3,357,349	+		LRK53_RS15370	0.48	-2.8
3,357,349	+		LRK53_RS15370	0.48	+1.4
3,357,349	+		LRK53_RS15370	0.48	-2.0
3,357,349	+		LRK53_RS15370	0.48	-0.4
3,357,349	+		LRK53_RS15370	0.48	+1.1
3,357,349	+		LRK53_RS15370	0.48	-0.8
3,357,349	+		LRK53_RS15370	0.48	-1.4
3,357,349	+		LRK53_RS15370	0.48	-0.5
3,357,349	+		LRK53_RS15370	0.48	+0.2
3,357,349	+		LRK53_RS15370	0.48	-1.9
3,357,349	+		LRK53_RS15370	0.48	+0.4
3,357,349	+		LRK53_RS15370	0.48	+0.9
3,357,349	+		LRK53_RS15370	0.48	-0.6
3,357,350	-		LRK53_RS15370	0.48	-1.6
3,357,350	-		LRK53_RS15370	0.48	-0.8
3,357,350	-		LRK53_RS15370	0.48	-1.6
3,357,350	-		LRK53_RS15370	0.48	-0.8
3,357,350	-		LRK53_RS15370	0.48	+0.2
3,357,350	-		LRK53_RS15370	0.48	-0.6
3,357,350	-		LRK53_RS15370	0.48	-0.9
3,357,350	-		LRK53_RS15370	0.48	+0.4
3,357,350	-		LRK53_RS15370	0.48	-0.8
3,357,350	-		LRK53_RS15370	0.48	+1.9
3,357,350	-		LRK53_RS15370	0.48	+0.2
3,357,350	-		LRK53_RS15370	0.48	-0.7
3,357,350	-		LRK53_RS15370	0.48	-1.0
3,357,350	-		LRK53_RS15370	0.48	+0.5
3,357,350	-		LRK53_RS15370	0.48	-1.4
3,357,384	+		LRK53_RS15370	0.51	-1.0
3,357,384	+		LRK53_RS15370	0.51	-1.7
3,357,384	+		LRK53_RS15370	0.51	-2.0
3,357,384	+		LRK53_RS15370	0.51	-0.5
3,357,385	-		LRK53_RS15370	0.51	-1.4
3,357,385	-		LRK53_RS15370	0.51	-0.1
3,357,458	-		LRK53_RS15370	0.57	-1.3
3,357,458	-		LRK53_RS15370	0.57	-1.3
3,357,482	-		LRK53_RS15370	0.59	-1.5
3,357,482	-		LRK53_RS15370	0.59	-2.1
3,357,529	+		LRK53_RS15370	0.63	-1.4
3,357,529	+		LRK53_RS15370	0.63	-1.1
3,357,529	+		LRK53_RS15370	0.63	-0.5
3,357,529	+		LRK53_RS15370	0.63	+0.3
3,357,530	-		LRK53_RS15370	0.63	+2.2
3,357,530	-		LRK53_RS15370	0.63	-1.1
3,357,635	+		LRK53_RS15370	0.72	+1.4
3,357,635	+		LRK53_RS15370	0.72	-1.1
3,357,636	-		LRK53_RS15370	0.72	-0.5
3,357,671	-		LRK53_RS15370	0.75	+0.4
3,357,671	-		LRK53_RS15370	0.75	-0.7
3,357,671	-		LRK53_RS15370	0.75	-1.1
3,357,673	+		LRK53_RS15370	0.75	-1.1
3,357,674	-		LRK53_RS15370	0.75	+0.4
3,357,674	-		LRK53_RS15370	0.75	-1.3
3,357,674	-		LRK53_RS15370	0.75	-1.3
3,357,674	-		LRK53_RS15370	0.75	+0.6
3,357,674	-		LRK53_RS15370	0.75	-0.4
3,357,674	-		LRK53_RS15370	0.75	+0.6
3,357,674	-		LRK53_RS15370	0.75	-0.2
3,357,843	-		LRK53_RS15370	0.89	-0.5
3,357,843	-		LRK53_RS15370	0.89	-0.7
3,357,945	+				-0.8
3,357,945	+				+0.6
3,357,959	+				-1.8
3,357,959	+				-1.1
3,357,959	+				-0.1
3,357,959	+				-0.4
3,357,959	+				-1.6
3,357,960	-				-0.5
3,357,960	-				-2.7
3,357,960	-				-0.7
3,357,960	-				-1.9
3,357,960	-				-0.1
3,358,006	+				-1.5
3,358,006	+				-0.1
3,358,007	-				-0.1
3,358,007	-				-0.8
3,358,007	-				-1.4
3,358,016	+				-1.2
3,358,016	+				-0.3
3,358,017	-				-2.0
3,358,053	+				-2.7
3,358,053	+				-1.3
3,358,053	+				-1.0
3,358,053	+				+0.3
3,358,053	+				+1.1
3,358,053	+				-0.5
3,358,054	-				-0.8
3,358,054	-				-1.6
3,358,054	-				+0.0
3,358,054	-				+0.0
3,358,054	-				-2.6
3,358,054	-				-0.5
3,358,054	-				-1.5
3,358,054	-				+0.0
3,358,054	-				-0.5
3,358,054	-				-0.4
3,358,307	+		LRK53_RS15375	0.27	-0.2
3,358,307	+		LRK53_RS15375	0.27	+0.0
3,358,331	+		LRK53_RS15375	0.28	+0.0
3,358,331	+		LRK53_RS15375	0.28	-3.1
3,358,332	-		LRK53_RS15375	0.28	-0.1
3,358,332	-		LRK53_RS15375	0.28	-1.0
3,358,334	+		LRK53_RS15375	0.29	-0.1
3,358,517	+		LRK53_RS15375	0.43	+1.6
3,358,517	+		LRK53_RS15375	0.43	+1.2
3,358,517	+		LRK53_RS15375	0.43	-0.2
3,358,517	+		LRK53_RS15375	0.43	-0.7
3,358,517	+		LRK53_RS15375	0.43	-0.2
3,358,517	+		LRK53_RS15375	0.43	-2.1
3,358,517	+		LRK53_RS15375	0.43	-0.3
3,358,517	+		LRK53_RS15375	0.43	+0.0
3,358,518	-		LRK53_RS15375	0.43	+0.3
3,358,518	-		LRK53_RS15375	0.43	-1.9
3,358,518	-		LRK53_RS15375	0.43	-1.5
3,358,518	-		LRK53_RS15375	0.43	+0.0
3,358,518	-		LRK53_RS15375	0.43	-2.3
3,358,523	+		LRK53_RS15375	0.43	-3.8
3,358,523	+		LRK53_RS15375	0.43	-3.3
3,358,524	-		LRK53_RS15375	0.43	+0.3
3,358,550	+		LRK53_RS15375	0.45	+0.5
3,358,551	-		LRK53_RS15375	0.45	-0.4
3,358,568	+		LRK53_RS15375	0.47	+0.7
3,358,568	+		LRK53_RS15375	0.47	-0.4
3,358,568	+		LRK53_RS15375	0.47	-1.0
3,358,568	+		LRK53_RS15375	0.47	-0.9
3,358,569	-		LRK53_RS15375	0.47	-1.4
3,358,569	-		LRK53_RS15375	0.47	-1.3
3,358,569	-		LRK53_RS15375	0.47	-0.4
3,358,569	-		LRK53_RS15375	0.47	-0.8
3,358,569	-		LRK53_RS15375	0.47	-0.3
3,358,829	+		LRK53_RS15375	0.67	-2.7
3,358,829	+		LRK53_RS15375	0.67	-1.0
3,358,829	+		LRK53_RS15375	0.67	-0.3
3,358,829	+		LRK53_RS15375	0.67	-2.3
3,358,829	+		LRK53_RS15375	0.67	-1.8
3,358,829	+		LRK53_RS15375	0.67	+0.2
3,358,829	+		LRK53_RS15375	0.67	-1.3
3,358,830	-		LRK53_RS15375	0.67	-1.1
3,358,830	-		LRK53_RS15375	0.67	+2.2
3,358,830	-		LRK53_RS15375	0.67	-1.1
3,359,024	+		LRK53_RS15375	0.82	-1.3
3,359,025	-		LRK53_RS15375	0.82	+0.0
3,359,025	-		LRK53_RS15375	0.82	-0.4
3,359,139	+				-1.9
3,359,139	+				-0.9
3,359,148	+				-0.5
3,359,148	+				-2.2
3,359,148	+				-2.3
3,359,148	+				-1.5
3,359,148	+				-0.6
3,359,148	+				-0.5
3,359,148	+				-1.8
3,359,148	+				+1.6
3,359,148	+				+0.9
3,359,148	+				-2.9
3,359,148	+				-0.4
3,359,148	+				+0.4
3,359,148	+				+0.7
3,359,148	+				-1.7
3,359,148	+				-1.0
3,359,148	+				-1.2
3,359,149	-				-0.9
3,359,149	-				-0.3
3,359,149	-				-1.3
3,359,149	-				-1.1
3,359,149	-				+0.5
3,359,149	-				-2.9
3,359,149	-				-0.0
3,359,149	-				-0.9
3,359,149	-				+1.2
3,359,150	+				+0.6
3,359,150	+				+1.4
3,359,150	+				-1.6
3,359,150	+				+0.1
3,359,150	+				-0.8
3,359,151	-				+1.0
3,359,151	-				-0.3
3,359,314	+				-0.1
3,359,314	+				-1.0
3,359,315	-				-0.3
3,359,315	-				-0.6
3,359,315	-				-1.0
3,359,315	-				+1.0
3,359,599	+		LRK53_RS15380	0.26	-1.1
3,359,599	+		LRK53_RS15380	0.26	-0.3
3,359,599	+		LRK53_RS15380	0.26	-0.1
3,359,599	+		LRK53_RS15380	0.26	+0.5
3,359,599	+		LRK53_RS15380	0.26	-2.1
3,359,599	+		LRK53_RS15380	0.26	+0.4
3,359,599	+		LRK53_RS15380	0.26	+0.9
3,359,599	+		LRK53_RS15380	0.26	+0.5
3,359,599	+		LRK53_RS15380	0.26	-0.6
3,359,599	+		LRK53_RS15380	0.26	+0.4
3,359,600	-		LRK53_RS15380	0.26	+0.0
3,359,600	-		LRK53_RS15380	0.26	-0.1
3,359,602	+		LRK53_RS15380	0.26	-1.5
3,359,602	+		LRK53_RS15380	0.26	+0.0
3,359,603	-		LRK53_RS15380	0.26	-0.7
3,359,603	-		LRK53_RS15380	0.26	-0.4
3,360,109	+		LRK53_RS15380	0.64	-1.1
3,360,109	+		LRK53_RS15380	0.64	-1.9
3,360,110	-		LRK53_RS15380	0.64	-0.4
3,360,110	-		LRK53_RS15380	0.64	-1.1
3,360,181	+		LRK53_RS15380	0.70	+0.4
3,360,181	+		LRK53_RS15380	0.70	-0.5
3,360,181	+		LRK53_RS15380	0.70	-2.8
3,360,181	+		LRK53_RS15380	0.70	-2.3
3,360,182	-		LRK53_RS15380	0.70	-0.8
3,360,182	-		LRK53_RS15380	0.70	+0.2
3,360,182	-		LRK53_RS15380	0.70	-0.3