Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11240

Experiment: planktonic; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM;
2,509,103	+		LRK53_RS11235	0.44	-2.0
2,509,103	+		LRK53_RS11235	0.44	-1.5
2,509,104	-		LRK53_RS11235	0.44	-3.3
2,509,229	+		LRK53_RS11235	0.52	+1.2
2,509,229	+		LRK53_RS11235	0.52	-0.8
2,509,230	-		LRK53_RS11235	0.52	+1.6
2,509,230	-		LRK53_RS11235	0.52	+0.6
2,509,296	+		LRK53_RS11235	0.56	-1.5
2,509,296	+		LRK53_RS11235	0.56	-0.5
2,509,304	+		LRK53_RS11235	0.57	-0.8
2,509,305	-		LRK53_RS11235	0.57	-2.0
2,509,305	-		LRK53_RS11235	0.57	+1.0
2,509,305	-		LRK53_RS11235	0.57	-1.3
2,509,554	+		LRK53_RS11235	0.73	-1.6
2,509,554	+		LRK53_RS11235	0.73	-2.2
2,509,554	+		LRK53_RS11235	0.73	-1.7
2,509,554	+		LRK53_RS11235	0.73	-1.1
2,509,554	+		LRK53_RS11235	0.73	-2.0
2,509,554	+		LRK53_RS11235	0.73	-1.5
2,509,554	+		LRK53_RS11235	0.73	-0.8
2,509,554	+		LRK53_RS11235	0.73	-2.4
2,509,554	+		LRK53_RS11235	0.73	-1.4
2,509,554	+		LRK53_RS11235	0.73	-1.1
2,509,554	+		LRK53_RS11235	0.73	-0.4
2,509,554	+		LRK53_RS11235	0.73	+0.8
2,509,554	+		LRK53_RS11235	0.73	+1.7
2,509,554	+		LRK53_RS11235	0.73	-1.3
2,509,555	-		LRK53_RS11235	0.73	-0.4
2,509,555	-		LRK53_RS11235	0.73	+0.5
2,509,555	-		LRK53_RS11235	0.73	-1.3
2,509,555	-		LRK53_RS11235	0.73	-0.8
2,509,555	-		LRK53_RS11235	0.73	-2.8
2,509,555	-		LRK53_RS11235	0.73	-2.8
2,509,555	-		LRK53_RS11235	0.73	-0.5
2,509,555	-		LRK53_RS11235	0.73	-3.5
2,509,555	-		LRK53_RS11235	0.73	-2.2
2,509,555	-		LRK53_RS11235	0.73	-1.1
2,509,555	-		LRK53_RS11235	0.73	-0.9
2,509,555	-		LRK53_RS11235	0.73	-0.2
2,509,555	-		LRK53_RS11235	0.73	-2.2
2,509,673	+		LRK53_RS11235	0.80	-1.3
2,509,673	+		LRK53_RS11235	0.80	-0.7
2,509,673	+		LRK53_RS11235	0.80	-0.7
2,509,673	+		LRK53_RS11235	0.80	-0.5
2,509,673	+		LRK53_RS11235	0.80	-0.2
2,509,674	-		LRK53_RS11235	0.80	-0.2
2,509,674	-		LRK53_RS11235	0.80	-1.2
2,509,760	+		LRK53_RS11235	0.86	+1.4
2,509,761	-		LRK53_RS11235	0.86	-0.5
2,510,048	-				-0.4
2,510,053	+				+0.6
2,510,053	+				-0.8
2,510,053	+				-1.6
2,510,053	+				-1.4
2,510,053	+				-3.1
2,510,053	+				-2.1
2,510,053	+				-0.4
2,510,053	+				-0.7
2,510,053	+				-1.0
2,510,053	+				-1.8
2,510,053	+				-1.4
2,510,053	+				-1.5
2,510,053	+				-1.1
2,510,053	+				-0.0
2,510,053	+				-1.0
2,510,053	+				-1.9
2,510,053	+				+0.5
2,510,053	+				-2.1
2,510,053	+				-0.7
2,510,053	+				-0.4
2,510,053	+				-0.2
2,510,053	+				-0.0
2,510,053	+				-0.5
2,510,053	+				-0.0
2,510,053	+				-0.5
2,510,053	+				+0.5
2,510,053	+				-1.6
2,510,053	+				-0.6
2,510,053	+				-1.3
2,510,053	+				-0.5
2,510,053	+				-0.9
2,510,053	+				-0.9
2,510,053	+				-2.5
2,510,053	+				-2.7
2,510,053	+				-1.9
2,510,053	+				+0.9
2,510,053	+				-1.7
2,510,053	+				-0.8
2,510,053	+				-1.1
2,510,053	+				-0.7
2,510,053	+				-2.5
2,510,053	+				-0.5
2,510,053	+				-0.8
2,510,053	+				-1.6
2,510,054	-				-1.1
2,510,054	-				+0.1
2,510,054	-				-2.5
2,510,054	-				-0.6
2,510,054	-				-1.9
2,510,054	-				-1.6
2,510,054	-				-1.0
2,510,054	-				-1.0
2,510,054	-				-0.4
2,510,054	-				-1.7
2,510,054	-				-1.8
2,510,054	-				-1.6
2,510,054	-				+0.3
2,510,054	-				-0.7
2,510,054	-				-1.6
2,510,054	-				+1.7
2,510,054	-				+1.2
2,510,054	-				+2.4
2,510,054	-				-0.3
2,510,054	-				-1.0
2,510,054	-				-1.0
2,510,054	-				-2.8
2,510,054	-				-2.1
2,510,054	-				-0.4
2,510,054	-				-0.6
2,510,054	-				-1.5
2,510,054	-				-1.2
2,510,054	-				-0.3
2,510,054	-				-0.5
2,510,054	-				-1.1
2,510,054	-				-0.7
2,510,054	-				-0.5
2,510,054	-				-2.8
2,510,054	-				-0.2
2,510,054	-				-0.4
2,510,302	+		LRK53_RS11240	0.30	-2.0
2,510,302	+		LRK53_RS11240	0.30	-1.1
2,510,302	+		LRK53_RS11240	0.30	-0.9
2,510,302	+		LRK53_RS11240	0.30	-1.3
2,510,302	+		LRK53_RS11240	0.30	-1.6
2,510,302	+		LRK53_RS11240	0.30	-2.3
2,510,302	+		LRK53_RS11240	0.30	-1.6
2,510,302	+		LRK53_RS11240	0.30	-0.2
2,510,302	+		LRK53_RS11240	0.30	+0.8
2,510,303	-		LRK53_RS11240	0.30	-0.3
2,510,303	-		LRK53_RS11240	0.30	-1.9
2,510,303	-		LRK53_RS11240	0.30	-1.3
2,510,303	-		LRK53_RS11240	0.30	-0.8
2,510,303	-		LRK53_RS11240	0.30	-0.6
2,510,378	+		LRK53_RS11240	0.40	+0.3
2,510,378	+		LRK53_RS11240	0.40	+0.4
2,510,378	+		LRK53_RS11240	0.40	-1.3
2,510,379	-		LRK53_RS11240	0.40	-1.6
2,510,379	-		LRK53_RS11240	0.40	+0.2
2,510,379	-		LRK53_RS11240	0.40	-1.1
2,510,379	-		LRK53_RS11240	0.40	-0.0
2,510,379	-		LRK53_RS11240	0.40	-0.0
2,510,379	-		LRK53_RS11240	0.40	+0.2
2,510,413	+		LRK53_RS11240	0.45	+0.3
2,510,413	+		LRK53_RS11240	0.45	-1.0
2,510,413	+		LRK53_RS11240	0.45	-1.7
2,510,414	-		LRK53_RS11240	0.45	+0.6
2,510,562	+		LRK53_RS11240	0.66	-1.8
2,510,562	+		LRK53_RS11240	0.66	-0.0
2,510,562	+		LRK53_RS11240	0.66	-1.3
2,510,563	-		LRK53_RS11240	0.66	-1.8
2,510,563	-		LRK53_RS11240	0.66	-1.0
2,510,563	-		LRK53_RS11240	0.66	-2.0
2,510,563	-		LRK53_RS11240	0.66	-1.1
2,510,583	+		LRK53_RS11240	0.69	-1.3
2,510,584	-		LRK53_RS11240	0.69	-0.8
2,510,584	-		LRK53_RS11240	0.69	-0.9
2,510,657	-		LRK53_RS11240	0.79	-0.1
2,510,662	+		LRK53_RS11240	0.80	-1.6
2,510,662	+		LRK53_RS11240	0.80	+0.0
2,510,662	+		LRK53_RS11240	0.80	-1.2
2,510,662	+		LRK53_RS11240	0.80	-0.4
2,510,663	-		LRK53_RS11240	0.80	-1.1
2,510,903	+				-0.0
2,510,903	+				-1.7
2,510,903	+				-0.8
2,510,903	+				-2.1
2,510,903	+				-1.2
2,510,904	-				+0.5
2,510,904	-				-0.2
2,510,949	+				-3.0
2,510,949	+				-2.0
2,510,949	+				-1.7
2,510,949	+				-1.8
2,510,949	+				-0.0
2,510,949	+				-1.4
2,510,949	+				-1.6
2,510,949	+				-0.5
2,510,949	+				+0.1
2,510,949	+				-1.0
2,510,949	+				+0.4
2,510,949	+				-0.7
2,510,949	+				+0.6
2,510,949	+				+1.5
2,510,949	+				-0.3
2,510,950	-				+0.4
2,510,950	-				-1.9
2,510,950	-				+1.0
2,510,950	-				-1.8
2,510,950	-				+0.2
2,510,950	-				-0.6
2,510,950	-				-1.3
2,510,950	-				+0.1
2,510,950	-				-1.6
2,510,950	-				-0.2
2,510,950	-				-2.5
2,510,950	-				-0.0
2,510,950	-				-1.9
2,510,950	-				-0.5
2,510,950	-				-1.4
2,511,008	+				-1.7
2,511,046	+				-0.5
2,511,047	-				-1.8
2,511,047	-				-1.4
2,511,047	-				+0.3
2,511,070	+		LRK53_RS11245	0.12	-0.7
2,511,070	+		LRK53_RS11245	0.12	+1.4
2,511,070	+		LRK53_RS11245	0.12	-1.6
2,511,070	+		LRK53_RS11245	0.12	-1.2
2,511,071	-		LRK53_RS11245	0.12	-0.2
2,511,071	-		LRK53_RS11245	0.12	-1.7
2,511,071	-		LRK53_RS11245	0.12	-1.6
2,511,071	-		LRK53_RS11245	0.12	-1.3
2,511,355	+		LRK53_RS11245	0.38	+0.0
2,511,355	+		LRK53_RS11245	0.38	-0.0
2,511,355	+		LRK53_RS11245	0.38	-0.3
2,511,356	-		LRK53_RS11245	0.38	+1.0
2,511,356	-		LRK53_RS11245	0.38	-0.4
2,511,356	-		LRK53_RS11245	0.38	-1.6
2,511,356	-		LRK53_RS11245	0.38	-0.8
2,511,439	+		LRK53_RS11245	0.46	+0.6
2,511,440	-		LRK53_RS11245	0.46	-1.7
2,511,440	-		LRK53_RS11245	0.46	-1.6
2,511,460	+		LRK53_RS11245	0.48	-1.1
2,511,461	-		LRK53_RS11245	0.48	-0.5
2,511,479	+		LRK53_RS11245	0.50	+0.4
2,511,480	-		LRK53_RS11245	0.50	+0.3
2,511,480	-		LRK53_RS11245	0.50	-0.9
2,511,503	-		LRK53_RS11245	0.52	-2.2
2,511,503	-		LRK53_RS11245	0.52	-0.0
2,511,688	+		LRK53_RS11245	0.69	-0.6
2,511,689	-		LRK53_RS11245	0.69	+0.6
2,511,788	+		LRK53_RS11245	0.78	-1.7
2,511,788	+		LRK53_RS11245	0.78	-0.6
2,511,789	-		LRK53_RS11245	0.78	+0.4
2,511,789	-		LRK53_RS11245	0.78	-1.3
2,511,789	-		LRK53_RS11245	0.78	-1.9