Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04080 and LRK53_RS04085 are separated by 92 nucleotides LRK53_RS04085 and LRK53_RS04090 are separated by 90 nucleotides
LRK53_RS04080: LRK53_RS04080 - MFS transporter, at 958,819 to 960,423
_RS04080
LRK53_RS04085: LRK53_RS04085 - hypothetical protein, at 960,516 to 960,845
_RS04085
LRK53_RS04090: LRK53_RS04090 - family 43 glycosylhydrolase, at 960,936 to 962,789
_RS04090
Position (kb) 960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 959.536 kb on + strand, within LRK53_RS04080 at 959.536 kb on + strand, within LRK53_RS04080 at 959.536 kb on + strand, within LRK53_RS04080 at 959.536 kb on + strand, within LRK53_RS04080 at 959.537 kb on - strand, within LRK53_RS04080 at 959.597 kb on + strand, within LRK53_RS04080 at 959.597 kb on + strand, within LRK53_RS04080 at 959.597 kb on + strand, within LRK53_RS04080 at 959.598 kb on - strand, within LRK53_RS04080 at 959.598 kb on - strand, within LRK53_RS04080 at 959.705 kb on + strand, within LRK53_RS04080 at 959.706 kb on - strand, within LRK53_RS04080 at 960.026 kb on + strand, within LRK53_RS04080 at 960.027 kb on - strand, within LRK53_RS04080 at 960.027 kb on - strand, within LRK53_RS04080 at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.440 kb on + strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.441 kb on - strand at 960.455 kb on + strand at 960.500 kb on + strand at 960.500 kb on + strand at 960.501 kb on - strand at 960.501 kb on - strand at 960.501 kb on - strand at 960.501 kb on - strand at 960.610 kb on - strand, within LRK53_RS04085 at 960.632 kb on - strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.637 kb on + strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.638 kb on - strand, within LRK53_RS04085 at 960.688 kb on + strand, within LRK53_RS04085 at 960.746 kb on + strand, within LRK53_RS04085 at 960.746 kb on + strand, within LRK53_RS04085 at 960.746 kb on + strand, within LRK53_RS04085 at 960.747 kb on - strand, within LRK53_RS04085 at 960.747 kb on - strand, within LRK53_RS04085 at 960.747 kb on - strand, within LRK53_RS04085 at 960.901 kb on + strand at 960.902 kb on - strand at 961.009 kb on + strand at 961.009 kb on + strand at 961.009 kb on + strand at 961.010 kb on - strand at 961.010 kb on - strand at 961.072 kb on + strand at 961.072 kb on + strand at 961.072 kb on + strand at 961.072 kb on + strand at 961.072 kb on + strand at 961.072 kb on + strand at 961.072 kb on + strand at 961.072 kb on + strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.073 kb on - strand at 961.118 kb on - strand at 961.118 kb on - strand at 961.285 kb on + strand, within LRK53_RS04090 at 961.285 kb on + strand, within LRK53_RS04090 at 961.285 kb on + strand, within LRK53_RS04090 at 961.286 kb on - strand, within LRK53_RS04090 at 961.286 kb on - strand, within LRK53_RS04090 at 961.286 kb on - strand, within LRK53_RS04090 at 961.286 kb on - strand, within LRK53_RS04090 at 961.328 kb on - strand, within LRK53_RS04090 at 961.456 kb on + strand, within LRK53_RS04090 at 961.465 kb on + strand, within LRK53_RS04090 at 961.466 kb on - strand, within LRK53_RS04090
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 959,536 + LRK53_RS04080 0.45 -1.6 959,536 + LRK53_RS04080 0.45 -1.1 959,536 + LRK53_RS04080 0.45 -0.7 959,536 + LRK53_RS04080 0.45 -0.5 959,537 - LRK53_RS04080 0.45 -1.4 959,597 + LRK53_RS04080 0.48 -0.5 959,597 + LRK53_RS04080 0.48 +0.2 959,597 + LRK53_RS04080 0.48 -1.4 959,598 - LRK53_RS04080 0.49 +1.3 959,598 - LRK53_RS04080 0.49 -1.6 959,705 + LRK53_RS04080 0.55 -0.8 959,706 - LRK53_RS04080 0.55 +0.3 960,026 + LRK53_RS04080 0.75 -2.4 960,027 - LRK53_RS04080 0.75 +0.6 960,027 - LRK53_RS04080 0.75 -1.0 960,440 + -1.1 960,440 + +0.0 960,440 + +0.6 960,440 + +0.8 960,440 + +0.4 960,440 + -0.3 960,440 + -1.0 960,440 + +0.6 960,440 + -0.9 960,440 + +0.6 960,440 + -0.7 960,440 + -1.2 960,440 + -0.8 960,440 + -0.7 960,440 + -0.7 960,441 - -1.8 960,441 - -0.1 960,441 - -2.4 960,441 - -0.9 960,441 - -0.2 960,441 - -0.4 960,441 - +0.2 960,441 - +0.9 960,441 - -1.6 960,441 - -0.4 960,441 - -0.7 960,441 - -0.6 960,441 - +1.8 960,441 - -1.9 960,441 - -0.9 960,455 + -0.5 960,500 + -0.1 960,500 + -2.3 960,501 - -1.5 960,501 - -0.1 960,501 - -2.1 960,501 - -0.3 960,610 - LRK53_RS04085 0.28 -0.9 960,632 - LRK53_RS04085 0.35 -0.8 960,637 + LRK53_RS04085 0.37 -0.1 960,637 + LRK53_RS04085 0.37 +0.9 960,637 + LRK53_RS04085 0.37 -2.0 960,637 + LRK53_RS04085 0.37 -0.9 960,637 + LRK53_RS04085 0.37 -1.1 960,637 + LRK53_RS04085 0.37 -0.6 960,637 + LRK53_RS04085 0.37 -3.4 960,637 + LRK53_RS04085 0.37 -0.1 960,637 + LRK53_RS04085 0.37 -2.4 960,637 + LRK53_RS04085 0.37 -1.2 960,637 + LRK53_RS04085 0.37 -0.2 960,637 + LRK53_RS04085 0.37 -0.8 960,637 + LRK53_RS04085 0.37 -1.9 960,637 + LRK53_RS04085 0.37 -0.6 960,638 - LRK53_RS04085 0.37 -1.0 960,638 - LRK53_RS04085 0.37 -1.4 960,638 - LRK53_RS04085 0.37 -0.2 960,638 - LRK53_RS04085 0.37 -1.3 960,638 - LRK53_RS04085 0.37 -0.4 960,638 - LRK53_RS04085 0.37 +0.4 960,638 - LRK53_RS04085 0.37 +1.6 960,638 - LRK53_RS04085 0.37 +0.6 960,638 - LRK53_RS04085 0.37 -0.6 960,638 - LRK53_RS04085 0.37 -1.1 960,638 - LRK53_RS04085 0.37 -0.4 960,638 - LRK53_RS04085 0.37 +0.2 960,638 - LRK53_RS04085 0.37 +0.6 960,688 + LRK53_RS04085 0.52 +0.0 960,746 + LRK53_RS04085 0.70 -1.4 960,746 + LRK53_RS04085 0.70 +0.0 960,746 + LRK53_RS04085 0.70 +0.2 960,747 - LRK53_RS04085 0.70 -0.6 960,747 - LRK53_RS04085 0.70 -0.9 960,747 - LRK53_RS04085 0.70 +0.2 960,901 + -1.6 960,902 - -1.0 961,009 + -2.1 961,009 + -1.1 961,009 + -1.3 961,010 - -1.3 961,010 - -1.1 961,072 + -1.8 961,072 + -2.0 961,072 + -1.5 961,072 + +0.5 961,072 + -0.7 961,072 + -2.0 961,072 + +1.6 961,072 + +0.2 961,073 - -1.9 961,073 - -0.9 961,073 - -2.9 961,073 - -2.0 961,073 - +0.4 961,073 - -0.5 961,073 - +0.3 961,073 - -0.8 961,073 - -0.4 961,073 - -1.8 961,073 - -1.2 961,073 - +1.1 961,073 - -1.8 961,073 - -1.3 961,073 - -0.7 961,073 - -1.4 961,073 - -0.3 961,073 - +0.0 961,118 - -0.1 961,118 - -0.2 961,285 + LRK53_RS04090 0.19 +0.1 961,285 + LRK53_RS04090 0.19 -0.7 961,285 + LRK53_RS04090 0.19 +1.6 961,286 - LRK53_RS04090 0.19 -0.3 961,286 - LRK53_RS04090 0.19 -0.8 961,286 - LRK53_RS04090 0.19 +1.0 961,286 - LRK53_RS04090 0.19 -1.3 961,328 - LRK53_RS04090 0.21 -1.7 961,456 + LRK53_RS04090 0.28 -1.5 961,465 + LRK53_RS04090 0.29 -0.5 961,466 - LRK53_RS04090 0.29 +1.5
Or see this region's nucleotide sequence