Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03565

Experiment: planktonic; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03560 and LRK53_RS03565 are separated by 31 nucleotidesLRK53_RS03565 and LRK53_RS03570 are separated by 295 nucleotides LRK53_RS03560: LRK53_RS03560 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 839,151 to 841,817 _RS03560 LRK53_RS03565: LRK53_RS03565 - hypothetical protein, at 841,849 to 842,757 _RS03565 LRK53_RS03570: LRK53_RS03570 - acid phosphatase, at 843,053 to 843,952 _RS03570 Position (kb) 841 842 843Strain fitness (log2 ratio) -3 -2 -1 0 1at 841.834 kb on + strandat 841.834 kb on + strandat 841.834 kb on + strandat 841.946 kb on + strand, within LRK53_RS03565at 841.946 kb on + strand, within LRK53_RS03565at 841.946 kb on + strand, within LRK53_RS03565at 841.946 kb on + strand, within LRK53_RS03565at 841.946 kb on + strand, within LRK53_RS03565at 841.946 kb on + strand, within LRK53_RS03565at 841.946 kb on + strand, within LRK53_RS03565at 841.947 kb on - strand, within LRK53_RS03565at 841.947 kb on - strand, within LRK53_RS03565at 841.947 kb on - strand, within LRK53_RS03565at 841.947 kb on - strand, within LRK53_RS03565at 842.009 kb on + strand, within LRK53_RS03565at 842.009 kb on + strand, within LRK53_RS03565at 842.009 kb on + strand, within LRK53_RS03565at 842.009 kb on + strand, within LRK53_RS03565at 842.009 kb on + strand, within LRK53_RS03565at 842.010 kb on - strand, within LRK53_RS03565at 842.010 kb on - strand, within LRK53_RS03565at 842.096 kb on + strand, within LRK53_RS03565at 842.096 kb on + strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.097 kb on - strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.138 kb on + strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.139 kb on - strand, within LRK53_RS03565at 842.405 kb on + strand, within LRK53_RS03565at 842.405 kb on + strand, within LRK53_RS03565at 842.405 kb on + strand, within LRK53_RS03565at 842.406 kb on - strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.447 kb on + strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.448 kb on - strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.573 kb on + strand, within LRK53_RS03565at 842.574 kb on - strand, within LRK53_RS03565at 842.978 kb on + strandat 842.978 kb on + strandat 842.978 kb on + strandat 842.978 kb on + strandat 842.978 kb on + strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 842.979 kb on - strandat 843.065 kb on + strandat 843.065 kb on + strandat 843.066 kb on - strandat 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.147 kb on + strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.148 kb on - strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.193 kb on + strand, within LRK53_RS03570at 843.194 kb on - strand, within LRK53_RS03570at 843.194 kb on - strand, within LRK53_RS03570at 843.194 kb on - strand, within LRK53_RS03570at 843.194 kb on - strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.195 kb on + strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.196 kb on - strand, within LRK53_RS03570at 843.245 kb on + strand, within LRK53_RS03570at 843.288 kb on + strand, within LRK53_RS03570at 843.288 kb on + strand, within LRK53_RS03570at 843.288 kb on + strand, within LRK53_RS03570at 843.288 kb on + strand, within LRK53_RS03570at 843.289 kb on - strand, within LRK53_RS03570at 843.289 kb on - strand, within LRK53_RS03570at 843.289 kb on - strand, within LRK53_RS03570at 843.289 kb on - strand, within LRK53_RS03570at 843.459 kb on + strand, within LRK53_RS03570at 843.459 kb on + strand, within LRK53_RS03570at 843.459 kb on + strand, within LRK53_RS03570at 843.459 kb on + strand, within LRK53_RS03570at 843.460 kb on - strand, within LRK53_RS03570at 843.460 kb on - strand, within LRK53_RS03570at 843.460 kb on - strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.567 kb on + strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.568 kb on - strand, within LRK53_RS03570at 843.601 kb on - strand, within LRK53_RS03570at 843.747 kb on + strand, within LRK53_RS03570at 843.748 kb on - strand, within LRK53_RS03570at 843.748 kb on - strand, within LRK53_RS03570

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM;
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841,834 + -0.9
841,834 + +1.2
841,834 + -0.5
841,946 + LRK53_RS03565 0.11 -1.4
841,946 + LRK53_RS03565 0.11 -2.4
841,946 + LRK53_RS03565 0.11 -2.4
841,946 + LRK53_RS03565 0.11 -0.3
841,946 + LRK53_RS03565 0.11 -1.3
841,946 + LRK53_RS03565 0.11 -1.3
841,946 + LRK53_RS03565 0.11 -1.6
841,947 - LRK53_RS03565 0.11 -0.5
841,947 - LRK53_RS03565 0.11 -2.9
841,947 - LRK53_RS03565 0.11 -0.7
841,947 - LRK53_RS03565 0.11 -1.4
842,009 + LRK53_RS03565 0.18 -1.6
842,009 + LRK53_RS03565 0.18 +0.2
842,009 + LRK53_RS03565 0.18 -0.8
842,009 + LRK53_RS03565 0.18 -1.1
842,009 + LRK53_RS03565 0.18 -1.8
842,010 - LRK53_RS03565 0.18 -1.3
842,010 - LRK53_RS03565 0.18 -1.2
842,096 + LRK53_RS03565 0.27 -0.8
842,096 + LRK53_RS03565 0.27 -0.5
842,097 - LRK53_RS03565 0.27 +0.7
842,097 - LRK53_RS03565 0.27 -0.2
842,097 - LRK53_RS03565 0.27 -1.3
842,097 - LRK53_RS03565 0.27 -2.1
842,097 - LRK53_RS03565 0.27 +0.2
842,097 - LRK53_RS03565 0.27 -1.2
842,138 + LRK53_RS03565 0.32 -1.8
842,138 + LRK53_RS03565 0.32 -0.1
842,138 + LRK53_RS03565 0.32 +0.1
842,138 + LRK53_RS03565 0.32 -1.9
842,138 + LRK53_RS03565 0.32 -0.8
842,138 + LRK53_RS03565 0.32 -0.7
842,138 + LRK53_RS03565 0.32 +0.1
842,138 + LRK53_RS03565 0.32 -0.9
842,139 - LRK53_RS03565 0.32 +0.2
842,139 - LRK53_RS03565 0.32 -0.8
842,139 - LRK53_RS03565 0.32 +0.3
842,139 - LRK53_RS03565 0.32 +0.2
842,139 - LRK53_RS03565 0.32 -0.6
842,139 - LRK53_RS03565 0.32 -0.6
842,139 - LRK53_RS03565 0.32 -1.8
842,139 - LRK53_RS03565 0.32 -2.2
842,405 + LRK53_RS03565 0.61 -1.0
842,405 + LRK53_RS03565 0.61 +0.4
842,405 + LRK53_RS03565 0.61 +0.0
842,406 - LRK53_RS03565 0.61 -2.6
842,447 + LRK53_RS03565 0.66 -2.4
842,447 + LRK53_RS03565 0.66 -1.2
842,447 + LRK53_RS03565 0.66 -1.3
842,447 + LRK53_RS03565 0.66 -0.2
842,447 + LRK53_RS03565 0.66 -1.2
842,448 - LRK53_RS03565 0.66 -1.3
842,448 - LRK53_RS03565 0.66 +0.1
842,448 - LRK53_RS03565 0.66 -0.3
842,448 - LRK53_RS03565 0.66 -1.9
842,448 - LRK53_RS03565 0.66 -0.9
842,448 - LRK53_RS03565 0.66 -0.3
842,573 + LRK53_RS03565 0.80 -0.7
842,573 + LRK53_RS03565 0.80 -0.8
842,573 + LRK53_RS03565 0.80 -1.3
842,573 + LRK53_RS03565 0.80 -1.2
842,573 + LRK53_RS03565 0.80 -0.7
842,573 + LRK53_RS03565 0.80 -1.3
842,573 + LRK53_RS03565 0.80 +0.6
842,574 - LRK53_RS03565 0.80 -1.2
842,978 + -1.0
842,978 + -0.5
842,978 + -1.6
842,978 + -0.9
842,978 + -2.4
842,979 - -3.0
842,979 - -0.9
842,979 - -2.2
842,979 - -1.5
842,979 - -1.3
842,979 - -1.4
842,979 - -0.1
842,979 - -1.2
842,979 - -0.5
842,979 - -1.3
842,979 - -1.4
842,979 - -0.9
842,979 - +0.7
842,979 - -1.7
843,065 + -1.9
843,065 + -0.7
843,066 - -0.1
843,147 + LRK53_RS03570 0.10 -1.1
843,147 + LRK53_RS03570 0.10 -0.3
843,147 + LRK53_RS03570 0.10 -0.8
843,147 + LRK53_RS03570 0.10 +0.6
843,147 + LRK53_RS03570 0.10 -0.7
843,147 + LRK53_RS03570 0.10 -1.2
843,147 + LRK53_RS03570 0.10 -0.7
843,147 + LRK53_RS03570 0.10 +1.5
843,147 + LRK53_RS03570 0.10 -2.2
843,147 + LRK53_RS03570 0.10 -2.4
843,147 + LRK53_RS03570 0.10 -0.9
843,148 - LRK53_RS03570 0.11 +0.0
843,148 - LRK53_RS03570 0.11 +1.6
843,148 - LRK53_RS03570 0.11 +1.2
843,148 - LRK53_RS03570 0.11 -0.7
843,148 - LRK53_RS03570 0.11 -1.2
843,148 - LRK53_RS03570 0.11 -1.4
843,148 - LRK53_RS03570 0.11 -0.1
843,193 + LRK53_RS03570 0.16 -1.8
843,193 + LRK53_RS03570 0.16 +0.2
843,193 + LRK53_RS03570 0.16 -1.1
843,193 + LRK53_RS03570 0.16 +1.5
843,193 + LRK53_RS03570 0.16 -2.1
843,193 + LRK53_RS03570 0.16 -0.5
843,193 + LRK53_RS03570 0.16 +1.1
843,193 + LRK53_RS03570 0.16 +0.1
843,193 + LRK53_RS03570 0.16 -1.1
843,193 + LRK53_RS03570 0.16 -2.0
843,193 + LRK53_RS03570 0.16 +1.4
843,193 + LRK53_RS03570 0.16 -0.7
843,194 - LRK53_RS03570 0.16 +0.1
843,194 - LRK53_RS03570 0.16 -1.4
843,194 - LRK53_RS03570 0.16 -0.7
843,194 - LRK53_RS03570 0.16 -2.2
843,195 + LRK53_RS03570 0.16 +1.1
843,195 + LRK53_RS03570 0.16 -0.5
843,195 + LRK53_RS03570 0.16 +1.1
843,195 + LRK53_RS03570 0.16 +0.6
843,195 + LRK53_RS03570 0.16 -2.4
843,195 + LRK53_RS03570 0.16 -0.6
843,195 + LRK53_RS03570 0.16 -1.4
843,195 + LRK53_RS03570 0.16 -1.7
843,195 + LRK53_RS03570 0.16 +0.2
843,195 + LRK53_RS03570 0.16 -1.5
843,195 + LRK53_RS03570 0.16 -1.9
843,195 + LRK53_RS03570 0.16 -0.8
843,195 + LRK53_RS03570 0.16 -1.2
843,195 + LRK53_RS03570 0.16 -0.2
843,195 + LRK53_RS03570 0.16 -2.1
843,195 + LRK53_RS03570 0.16 -0.7
843,195 + LRK53_RS03570 0.16 -0.4
843,195 + LRK53_RS03570 0.16 -1.5
843,195 + LRK53_RS03570 0.16 +1.0
843,195 + LRK53_RS03570 0.16 -1.0
843,196 - LRK53_RS03570 0.16 +0.1
843,196 - LRK53_RS03570 0.16 -3.1
843,196 - LRK53_RS03570 0.16 -1.6
843,196 - LRK53_RS03570 0.16 -1.2
843,196 - LRK53_RS03570 0.16 -1.4
843,196 - LRK53_RS03570 0.16 -0.5
843,196 - LRK53_RS03570 0.16 -1.5
843,196 - LRK53_RS03570 0.16 -1.3
843,196 - LRK53_RS03570 0.16 -1.0
843,245 + LRK53_RS03570 0.21 -2.3
843,288 + LRK53_RS03570 0.26 -0.5
843,288 + LRK53_RS03570 0.26 -1.6
843,288 + LRK53_RS03570 0.26 +0.9
843,288 + LRK53_RS03570 0.26 +0.1
843,289 - LRK53_RS03570 0.26 -1.3
843,289 - LRK53_RS03570 0.26 -2.1
843,289 - LRK53_RS03570 0.26 -0.4
843,289 - LRK53_RS03570 0.26 -0.1
843,459 + LRK53_RS03570 0.45 +1.2
843,459 + LRK53_RS03570 0.45 +0.6
843,459 + LRK53_RS03570 0.45 -0.1
843,459 + LRK53_RS03570 0.45 -1.2
843,460 - LRK53_RS03570 0.45 -1.1
843,460 - LRK53_RS03570 0.45 +0.7
843,460 - LRK53_RS03570 0.45 -1.4
843,567 + LRK53_RS03570 0.57 -2.4
843,567 + LRK53_RS03570 0.57 -0.8
843,567 + LRK53_RS03570 0.57 -1.9
843,567 + LRK53_RS03570 0.57 +0.9
843,567 + LRK53_RS03570 0.57 -1.2
843,567 + LRK53_RS03570 0.57 +0.8
843,568 - LRK53_RS03570 0.57 -1.8
843,568 - LRK53_RS03570 0.57 +0.2
843,568 - LRK53_RS03570 0.57 -1.0
843,568 - LRK53_RS03570 0.57 -0.1
843,568 - LRK53_RS03570 0.57 -2.0
843,568 - LRK53_RS03570 0.57 -2.1
843,601 - LRK53_RS03570 0.61 -0.2
843,747 + LRK53_RS03570 0.77 -2.9
843,748 - LRK53_RS03570 0.77 -1.4
843,748 - LRK53_RS03570 0.77 +0.2

Or see this region's nucleotide sequence