Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03390 and LRK53_RS03395 overlap by 4 nucleotides LRK53_RS03395 and LRK53_RS03400 are separated by 165 nucleotides LRK53_RS03400 and LRK53_RS03405 are separated by 127 nucleotides
LRK53_RS03390: LRK53_RS03390 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 803,721 to 804,317
_RS03390
LRK53_RS03395: LRK53_RS03395 - aminoacyl-tRNA hydrolase, at 804,314 to 804,736
_RS03395
LRK53_RS03400: LRK53_RS03400 - pseudouridine synthase, at 804,902 to 805,609
_RS03400
LRK53_RS03405: LRK53_RS03405 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 805,737 to 807,386
_RS03405
Position (kb)
804
805
806 Strain fitness (log2 ratio)
-2
-1
0
1 at 804.747 kb on + strand at 804.747 kb on + strand at 804.747 kb on + strand at 804.748 kb on - strand at 804.748 kb on - strand at 804.748 kb on - strand at 804.955 kb on - strand at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.353 kb on + strand, within LRK53_RS03400 at 805.353 kb on + strand, within LRK53_RS03400 at 805.354 kb on - strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.468 kb on - strand, within LRK53_RS03400 at 805.468 kb on - strand, within LRK53_RS03400 at 805.468 kb on - strand, within LRK53_RS03400 at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.726 kb on + strand at 805.809 kb on - strand at 805.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 804,747 + +0.4 804,747 + -1.5 804,747 + -0.8 804,748 - -0.2 804,748 - -0.4 804,748 - -1.6 804,955 - -0.6 805,065 + LRK53_RS03400 0.23 -0.5 805,065 + LRK53_RS03400 0.23 +0.9 805,065 + LRK53_RS03400 0.23 -0.2 805,065 + LRK53_RS03400 0.23 -0.9 805,065 + LRK53_RS03400 0.23 -1.8 805,065 + LRK53_RS03400 0.23 +0.2 805,065 + LRK53_RS03400 0.23 -0.9 805,066 - LRK53_RS03400 0.23 -1.3 805,066 - LRK53_RS03400 0.23 -1.2 805,066 - LRK53_RS03400 0.23 -0.5 805,066 - LRK53_RS03400 0.23 -2.1 805,066 - LRK53_RS03400 0.23 -1.1 805,066 - LRK53_RS03400 0.23 +0.1 805,066 - LRK53_RS03400 0.23 -0.7 805,189 - LRK53_RS03400 0.41 +0.2 805,189 - LRK53_RS03400 0.41 -2.0 805,189 - LRK53_RS03400 0.41 -0.8 805,353 + LRK53_RS03400 0.64 -1.6 805,353 + LRK53_RS03400 0.64 +0.6 805,354 - LRK53_RS03400 0.64 -1.3 805,467 + LRK53_RS03400 0.80 -0.4 805,467 + LRK53_RS03400 0.80 +1.0 805,467 + LRK53_RS03400 0.80 +0.2 805,467 + LRK53_RS03400 0.80 +0.2 805,467 + LRK53_RS03400 0.80 +0.1 805,467 + LRK53_RS03400 0.80 -1.5 805,468 - LRK53_RS03400 0.80 -1.1 805,468 - LRK53_RS03400 0.80 -1.5 805,468 - LRK53_RS03400 0.80 -0.4 805,631 - +0.5 805,631 - -0.5 805,631 - -1.6 805,631 - -1.6 805,631 - -0.5 805,631 - -0.5 805,631 - +0.6 805,631 - -0.9 805,726 + -0.1 805,809 - -1.8 805,809 - +0.7
Or see this region's nucleotide sequence