Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03025 and LRK53_RS03030 overlap by 4 nucleotides LRK53_RS03030 and LRK53_RS03035 are separated by 28 nucleotides LRK53_RS03035 and LRK53_RS03040 are separated by 148 nucleotides
LRK53_RS03025: LRK53_RS03025 - pimeloyl-ACP methyl ester esterase BioH, at 703,021 to 703,806
_RS03025
LRK53_RS03030: LRK53_RS03030 - sulfurtransferase, at 703,803 to 704,738
_RS03030
LRK53_RS03035: LRK53_RS03035 - 8-amino-7-oxononanoate synthase, at 704,767 to 705,972
_RS03035
LRK53_RS03040: LRK53_RS03040 - biotin synthase BioB, at 706,121 to 707,164
_RS03040
Position (kb) 704
705
706 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 703.796 kb on + strand at 703.796 kb on + strand at 703.796 kb on + strand at 703.797 kb on - strand at 703.797 kb on - strand at 703.797 kb on - strand at 703.797 kb on - strand at 703.797 kb on - strand at 703.819 kb on + strand at 704.101 kb on + strand, within LRK53_RS03030 at 704.101 kb on + strand, within LRK53_RS03030 at 704.101 kb on + strand, within LRK53_RS03030 at 704.101 kb on + strand, within LRK53_RS03030 at 704.102 kb on - strand, within LRK53_RS03030 at 704.102 kb on - strand, within LRK53_RS03030 at 704.102 kb on - strand, within LRK53_RS03030 at 704.102 kb on - strand, within LRK53_RS03030 at 704.102 kb on - strand, within LRK53_RS03030 at 704.102 kb on - strand, within LRK53_RS03030 at 704.102 kb on - strand, within LRK53_RS03030 at 704.102 kb on - strand, within LRK53_RS03030 at 704.128 kb on + strand, within LRK53_RS03030 at 704.128 kb on + strand, within LRK53_RS03030 at 704.128 kb on + strand, within LRK53_RS03030 at 704.128 kb on + strand, within LRK53_RS03030 at 704.128 kb on + strand, within LRK53_RS03030 at 704.128 kb on + strand, within LRK53_RS03030 at 704.128 kb on + strand, within LRK53_RS03030 at 704.128 kb on + strand, within LRK53_RS03030 at 704.129 kb on - strand, within LRK53_RS03030 at 704.129 kb on - strand, within LRK53_RS03030 at 704.129 kb on - strand, within LRK53_RS03030 at 704.129 kb on - strand, within LRK53_RS03030 at 704.129 kb on - strand, within LRK53_RS03030 at 704.129 kb on - strand, within LRK53_RS03030 at 704.129 kb on - strand, within LRK53_RS03030 at 704.129 kb on - strand, within LRK53_RS03030 at 704.197 kb on + strand, within LRK53_RS03030 at 704.197 kb on + strand, within LRK53_RS03030 at 704.198 kb on - strand, within LRK53_RS03030 at 704.198 kb on - strand, within LRK53_RS03030 at 704.198 kb on - strand, within LRK53_RS03030 at 704.198 kb on - strand, within LRK53_RS03030 at 704.198 kb on - strand, within LRK53_RS03030 at 704.221 kb on + strand, within LRK53_RS03030 at 704.222 kb on - strand, within LRK53_RS03030 at 704.222 kb on - strand, within LRK53_RS03030 at 704.317 kb on + strand, within LRK53_RS03030 at 704.558 kb on + strand, within LRK53_RS03030 at 704.558 kb on + strand, within LRK53_RS03030 at 704.558 kb on + strand, within LRK53_RS03030 at 704.558 kb on + strand, within LRK53_RS03030 at 704.558 kb on + strand, within LRK53_RS03030 at 704.558 kb on + strand, within LRK53_RS03030 at 704.559 kb on - strand, within LRK53_RS03030 at 704.559 kb on - strand, within LRK53_RS03030 at 704.713 kb on + strand at 704.713 kb on + strand at 704.713 kb on + strand at 704.713 kb on + strand at 704.714 kb on - strand at 704.768 kb on + strand at 704.768 kb on + strand at 704.769 kb on - strand at 704.769 kb on - strand at 704.769 kb on - strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.770 kb on + strand at 704.771 kb on - strand at 704.771 kb on - strand at 704.771 kb on - strand at 704.771 kb on - strand at 704.771 kb on - strand at 704.771 kb on - strand at 704.771 kb on - strand at 704.771 kb on - strand at 704.771 kb on - strand at 704.771 kb on - strand at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.164 kb on + strand, within LRK53_RS03035 at 705.165 kb on - strand, within LRK53_RS03035 at 705.165 kb on - strand, within LRK53_RS03035 at 705.165 kb on - strand, within LRK53_RS03035 at 705.165 kb on - strand, within LRK53_RS03035 at 705.170 kb on + strand, within LRK53_RS03035 at 705.170 kb on + strand, within LRK53_RS03035 at 705.170 kb on + strand, within LRK53_RS03035 at 705.170 kb on + strand, within LRK53_RS03035 at 705.170 kb on + strand, within LRK53_RS03035 at 705.170 kb on + strand, within LRK53_RS03035 at 705.170 kb on + strand, within LRK53_RS03035 at 705.171 kb on - strand, within LRK53_RS03035 at 705.171 kb on - strand, within LRK53_RS03035 at 705.171 kb on - strand, within LRK53_RS03035 at 705.171 kb on - strand, within LRK53_RS03035 at 705.171 kb on - strand, within LRK53_RS03035 at 705.171 kb on - strand, within LRK53_RS03035 at 705.171 kb on - strand, within LRK53_RS03035 at 705.638 kb on + strand, within LRK53_RS03035 at 705.638 kb on + strand, within LRK53_RS03035 at 705.638 kb on + strand, within LRK53_RS03035 at 705.638 kb on + strand, within LRK53_RS03035 at 705.638 kb on + strand, within LRK53_RS03035 at 705.638 kb on + strand, within LRK53_RS03035 at 705.638 kb on + strand, within LRK53_RS03035 at 705.639 kb on - strand, within LRK53_RS03035 at 705.639 kb on - strand, within LRK53_RS03035 at 705.639 kb on - strand, within LRK53_RS03035 at 705.818 kb on + strand, within LRK53_RS03035 at 705.818 kb on + strand, within LRK53_RS03035 at 705.819 kb on - strand, within LRK53_RS03035 at 705.819 kb on - strand, within LRK53_RS03035 at 705.819 kb on - strand, within LRK53_RS03035 at 706.122 kb on + strand at 706.122 kb on + strand at 706.122 kb on + strand at 706.122 kb on + strand at 706.122 kb on + strand at 706.122 kb on + strand at 706.123 kb on - strand at 706.123 kb on - strand at 706.299 kb on + strand, within LRK53_RS03040 at 706.299 kb on + strand, within LRK53_RS03040 at 706.300 kb on - strand, within LRK53_RS03040 at 706.622 kb on + strand, within LRK53_RS03040 at 706.622 kb on + strand, within LRK53_RS03040 at 706.622 kb on + strand, within LRK53_RS03040 at 706.622 kb on + strand, within LRK53_RS03040 at 706.623 kb on - strand, within LRK53_RS03040 at 706.623 kb on - strand, within LRK53_RS03040 at 706.647 kb on + strand, within LRK53_RS03040 at 706.647 kb on + strand, within LRK53_RS03040 at 706.658 kb on - strand, within LRK53_RS03040 at 706.674 kb on + strand, within LRK53_RS03040 at 706.674 kb on + strand, within LRK53_RS03040 at 706.675 kb on - strand, within LRK53_RS03040 at 706.675 kb on - strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.707 kb on + strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.708 kb on - strand, within LRK53_RS03040 at 706.710 kb on + strand, within LRK53_RS03040 at 706.710 kb on + strand, within LRK53_RS03040 at 706.710 kb on + strand, within LRK53_RS03040 at 706.710 kb on + strand, within LRK53_RS03040 at 706.711 kb on - strand, within LRK53_RS03040 at 706.711 kb on - strand, within LRK53_RS03040 at 706.711 kb on - strand, within LRK53_RS03040 at 706.711 kb on - strand, within LRK53_RS03040 at 706.926 kb on + strand, within LRK53_RS03040 at 706.960 kb on - strand, within LRK53_RS03040 at 706.960 kb on - strand, within LRK53_RS03040 at 706.960 kb on - strand, within LRK53_RS03040
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 703,796 + -1.8 703,796 + +1.1 703,796 + -1.7 703,797 - +0.0 703,797 - -0.9 703,797 - -0.6 703,797 - +0.4 703,797 - -1.7 703,819 + +0.6 704,101 + LRK53_RS03030 0.32 +0.5 704,101 + LRK53_RS03030 0.32 +1.2 704,101 + LRK53_RS03030 0.32 +0.8 704,101 + LRK53_RS03030 0.32 -0.0 704,102 - LRK53_RS03030 0.32 -2.1 704,102 - LRK53_RS03030 0.32 -1.0 704,102 - LRK53_RS03030 0.32 -3.7 704,102 - LRK53_RS03030 0.32 -1.0 704,102 - LRK53_RS03030 0.32 -3.0 704,102 - LRK53_RS03030 0.32 +0.2 704,102 - LRK53_RS03030 0.32 -0.1 704,102 - LRK53_RS03030 0.32 -3.2 704,128 + LRK53_RS03030 0.35 -1.6 704,128 + LRK53_RS03030 0.35 -1.4 704,128 + LRK53_RS03030 0.35 -2.6 704,128 + LRK53_RS03030 0.35 -0.4 704,128 + LRK53_RS03030 0.35 -0.9 704,128 + LRK53_RS03030 0.35 -1.5 704,128 + LRK53_RS03030 0.35 -0.9 704,128 + LRK53_RS03030 0.35 -0.8 704,129 - LRK53_RS03030 0.35 +0.2 704,129 - LRK53_RS03030 0.35 +0.8 704,129 - LRK53_RS03030 0.35 -0.7 704,129 - LRK53_RS03030 0.35 +0.4 704,129 - LRK53_RS03030 0.35 -1.7 704,129 - LRK53_RS03030 0.35 -0.2 704,129 - LRK53_RS03030 0.35 -1.8 704,129 - LRK53_RS03030 0.35 -0.7 704,197 + LRK53_RS03030 0.42 -0.5 704,197 + LRK53_RS03030 0.42 -0.7 704,198 - LRK53_RS03030 0.42 +0.0 704,198 - LRK53_RS03030 0.42 -1.7 704,198 - LRK53_RS03030 0.42 -2.6 704,198 - LRK53_RS03030 0.42 -1.3 704,198 - LRK53_RS03030 0.42 -0.5 704,221 + LRK53_RS03030 0.45 +1.1 704,222 - LRK53_RS03030 0.45 -1.2 704,222 - LRK53_RS03030 0.45 -1.9 704,317 + LRK53_RS03030 0.55 -0.4 704,558 + LRK53_RS03030 0.81 -1.6 704,558 + LRK53_RS03030 0.81 -3.5 704,558 + LRK53_RS03030 0.81 +0.3 704,558 + LRK53_RS03030 0.81 -1.3 704,558 + LRK53_RS03030 0.81 -0.8 704,558 + LRK53_RS03030 0.81 -0.9 704,559 - LRK53_RS03030 0.81 -1.0 704,559 - LRK53_RS03030 0.81 +0.0 704,713 + -2.6 704,713 + -0.1 704,713 + -1.2 704,713 + +0.5 704,714 - -1.0 704,768 + +0.6 704,768 + -0.5 704,769 - +1.4 704,769 - -0.7 704,769 - +1.9 704,770 + +0.4 704,770 + -1.0 704,770 + -0.5 704,770 + -1.1 704,770 + +0.9 704,770 + +1.1 704,770 + +0.2 704,770 + -1.4 704,770 + +0.0 704,770 + -1.6 704,770 + -0.1 704,770 + -1.2 704,770 + -3.1 704,770 + -0.0 704,771 - -0.6 704,771 - -2.0 704,771 - +0.0 704,771 - -1.1 704,771 - -1.5 704,771 - -0.4 704,771 - -2.5 704,771 - +0.9 704,771 - -0.1 704,771 - -0.9 705,164 + LRK53_RS03035 0.33 -1.3 705,164 + LRK53_RS03035 0.33 -1.4 705,164 + LRK53_RS03035 0.33 -0.9 705,164 + LRK53_RS03035 0.33 -0.4 705,164 + LRK53_RS03035 0.33 +0.2 705,164 + LRK53_RS03035 0.33 -1.3 705,164 + LRK53_RS03035 0.33 +0.4 705,164 + LRK53_RS03035 0.33 -0.4 705,164 + LRK53_RS03035 0.33 -0.9 705,164 + LRK53_RS03035 0.33 -1.1 705,164 + LRK53_RS03035 0.33 -0.8 705,164 + LRK53_RS03035 0.33 -1.6 705,164 + LRK53_RS03035 0.33 -1.0 705,164 + LRK53_RS03035 0.33 -1.2 705,164 + LRK53_RS03035 0.33 -0.6 705,165 - LRK53_RS03035 0.33 -1.1 705,165 - LRK53_RS03035 0.33 -0.6 705,165 - LRK53_RS03035 0.33 -0.2 705,165 - LRK53_RS03035 0.33 -1.0 705,170 + LRK53_RS03035 0.33 -1.2 705,170 + LRK53_RS03035 0.33 -1.5 705,170 + LRK53_RS03035 0.33 -2.4 705,170 + LRK53_RS03035 0.33 -1.9 705,170 + LRK53_RS03035 0.33 -0.2 705,170 + LRK53_RS03035 0.33 +0.0 705,170 + LRK53_RS03035 0.33 -0.6 705,171 - LRK53_RS03035 0.33 -0.7 705,171 - LRK53_RS03035 0.33 +0.0 705,171 - LRK53_RS03035 0.33 -0.7 705,171 - LRK53_RS03035 0.33 -1.3 705,171 - LRK53_RS03035 0.33 -0.6 705,171 - LRK53_RS03035 0.33 +1.3 705,171 - LRK53_RS03035 0.33 -0.7 705,638 + LRK53_RS03035 0.72 -1.1 705,638 + LRK53_RS03035 0.72 -0.6 705,638 + LRK53_RS03035 0.72 -1.0 705,638 + LRK53_RS03035 0.72 -1.3 705,638 + LRK53_RS03035 0.72 -0.4 705,638 + LRK53_RS03035 0.72 -0.2 705,638 + LRK53_RS03035 0.72 -0.2 705,639 - LRK53_RS03035 0.72 -1.3 705,639 - LRK53_RS03035 0.72 +0.9 705,639 - LRK53_RS03035 0.72 +0.2 705,818 + LRK53_RS03035 0.87 -0.4 705,818 + LRK53_RS03035 0.87 -0.4 705,819 - LRK53_RS03035 0.87 +0.9 705,819 - LRK53_RS03035 0.87 -0.1 705,819 - LRK53_RS03035 0.87 -0.5 706,122 + +1.0 706,122 + -1.8 706,122 + +2.2 706,122 + -1.0 706,122 + -0.4 706,122 + -0.4 706,123 - -2.0 706,123 - -0.9 706,299 + LRK53_RS03040 0.17 +0.4 706,299 + LRK53_RS03040 0.17 -0.2 706,300 - LRK53_RS03040 0.17 -0.4 706,622 + LRK53_RS03040 0.48 -1.4 706,622 + LRK53_RS03040 0.48 -0.9 706,622 + LRK53_RS03040 0.48 +0.0 706,622 + LRK53_RS03040 0.48 -1.3 706,623 - LRK53_RS03040 0.48 -1.4 706,623 - LRK53_RS03040 0.48 +0.6 706,647 + LRK53_RS03040 0.50 +0.2 706,647 + LRK53_RS03040 0.50 -1.3 706,658 - LRK53_RS03040 0.51 -1.7 706,674 + LRK53_RS03040 0.53 -1.0 706,674 + LRK53_RS03040 0.53 -1.4 706,675 - LRK53_RS03040 0.53 -0.5 706,675 - LRK53_RS03040 0.53 -0.8 706,707 + LRK53_RS03040 0.56 -0.1 706,707 + LRK53_RS03040 0.56 -0.2 706,707 + LRK53_RS03040 0.56 -2.7 706,707 + LRK53_RS03040 0.56 -0.2 706,707 + LRK53_RS03040 0.56 -0.1 706,707 + LRK53_RS03040 0.56 -0.3 706,707 + LRK53_RS03040 0.56 -1.4 706,707 + LRK53_RS03040 0.56 -0.2 706,707 + LRK53_RS03040 0.56 +0.2 706,707 + LRK53_RS03040 0.56 +0.2 706,707 + LRK53_RS03040 0.56 -1.3 706,707 + LRK53_RS03040 0.56 -0.2 706,707 + LRK53_RS03040 0.56 -1.0 706,707 + LRK53_RS03040 0.56 +0.1 706,707 + LRK53_RS03040 0.56 -2.2 706,707 + LRK53_RS03040 0.56 +0.0 706,707 + LRK53_RS03040 0.56 -1.4 706,708 - LRK53_RS03040 0.56 -2.2 706,708 - LRK53_RS03040 0.56 -1.5 706,708 - LRK53_RS03040 0.56 -0.5 706,708 - LRK53_RS03040 0.56 -0.2 706,708 - LRK53_RS03040 0.56 -0.2 706,708 - LRK53_RS03040 0.56 -0.4 706,708 - LRK53_RS03040 0.56 -1.1 706,708 - LRK53_RS03040 0.56 -0.4 706,708 - LRK53_RS03040 0.56 +1.2 706,708 - LRK53_RS03040 0.56 -1.2 706,708 - LRK53_RS03040 0.56 +0.0 706,708 - LRK53_RS03040 0.56 -1.7 706,708 - LRK53_RS03040 0.56 -1.7 706,708 - LRK53_RS03040 0.56 -1.9 706,710 + LRK53_RS03040 0.56 -0.0 706,710 + LRK53_RS03040 0.56 -1.5 706,710 + LRK53_RS03040 0.56 -1.9 706,710 + LRK53_RS03040 0.56 -1.0 706,711 - LRK53_RS03040 0.57 -0.2 706,711 - LRK53_RS03040 0.57 -0.5 706,711 - LRK53_RS03040 0.57 -0.1 706,711 - LRK53_RS03040 0.57 +0.9 706,926 + LRK53_RS03040 0.77 -1.0 706,960 - LRK53_RS03040 0.80 +0.8 706,960 - LRK53_RS03040 0.80 -0.5 706,960 - LRK53_RS03040 0.80 +0.7
Or see this region's nucleotide sequence