Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02210 and LRK53_RS02215 are separated by 63 nucleotides LRK53_RS02215 and LRK53_RS02220 are separated by 94 nucleotides LRK53_RS02220 and LRK53_RS02225 are separated by 103 nucleotides
LRK53_RS02210: LRK53_RS02210 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 514,866 to 516,260
_RS02210
LRK53_RS02215: LRK53_RS02215 - pteridine-dependent deoxygenase, at 516,324 to 517,313
_RS02215
LRK53_RS02220: LRK53_RS02220 - phosphopantetheine-binding protein, at 517,408 to 517,677
_RS02220
LRK53_RS02225: LRK53_RS02225 - hypothetical protein, at 517,781 to 518,500
_RS02225
Position (kb) 516
517
518 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 516.326 kb on - strand at 516.463 kb on + strand, within LRK53_RS02215 at 516.463 kb on + strand, within LRK53_RS02215 at 516.463 kb on + strand, within LRK53_RS02215 at 516.463 kb on + strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.464 kb on - strand, within LRK53_RS02215 at 516.676 kb on + strand, within LRK53_RS02215 at 516.677 kb on - strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.754 kb on + strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.755 kb on - strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.865 kb on + strand, within LRK53_RS02215 at 516.866 kb on - strand, within LRK53_RS02215 at 516.866 kb on - strand, within LRK53_RS02215 at 516.866 kb on - strand, within LRK53_RS02215 at 516.866 kb on - strand, within LRK53_RS02215 at 516.866 kb on - strand, within LRK53_RS02215 at 516.907 kb on + strand, within LRK53_RS02215 at 516.907 kb on + strand, within LRK53_RS02215 at 516.907 kb on + strand, within LRK53_RS02215 at 516.907 kb on + strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.908 kb on - strand, within LRK53_RS02215 at 516.970 kb on + strand, within LRK53_RS02215 at 516.970 kb on + strand, within LRK53_RS02215 at 516.971 kb on - strand, within LRK53_RS02215 at 516.971 kb on - strand, within LRK53_RS02215 at 516.971 kb on - strand, within LRK53_RS02215 at 517.081 kb on + strand, within LRK53_RS02215 at 517.082 kb on - strand, within LRK53_RS02215 at 517.082 kb on - strand, within LRK53_RS02215 at 517.082 kb on - strand, within LRK53_RS02215 at 517.212 kb on - strand, within LRK53_RS02215 at 517.252 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.313 kb on + strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.314 kb on - strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.344 kb on + strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.345 kb on - strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.349 kb on + strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.350 kb on - strand at 517.396 kb on - strand at 517.396 kb on - strand at 518.015 kb on + strand, within LRK53_RS02225 at 518.075 kb on + strand, within LRK53_RS02225 at 518.075 kb on + strand, within LRK53_RS02225 at 518.075 kb on + strand, within LRK53_RS02225 at 518.075 kb on + strand, within LRK53_RS02225 at 518.075 kb on + strand, within LRK53_RS02225 at 518.076 kb on - strand, within LRK53_RS02225 at 518.076 kb on - strand, within LRK53_RS02225 at 518.076 kb on - strand, within LRK53_RS02225 at 518.177 kb on + strand, within LRK53_RS02225 at 518.177 kb on + strand, within LRK53_RS02225 at 518.177 kb on + strand, within LRK53_RS02225
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 516,326 - -2.6 516,463 + LRK53_RS02215 0.14 +1.0 516,463 + LRK53_RS02215 0.14 +0.1 516,463 + LRK53_RS02215 0.14 +1.7 516,463 + LRK53_RS02215 0.14 +0.0 516,464 - LRK53_RS02215 0.14 -0.8 516,464 - LRK53_RS02215 0.14 +2.1 516,464 - LRK53_RS02215 0.14 -1.1 516,464 - LRK53_RS02215 0.14 -1.5 516,464 - LRK53_RS02215 0.14 -0.7 516,464 - LRK53_RS02215 0.14 -0.1 516,464 - LRK53_RS02215 0.14 -0.7 516,464 - LRK53_RS02215 0.14 -2.6 516,464 - LRK53_RS02215 0.14 -0.8 516,464 - LRK53_RS02215 0.14 +0.0 516,464 - LRK53_RS02215 0.14 -0.2 516,464 - LRK53_RS02215 0.14 -0.6 516,676 + LRK53_RS02215 0.36 -1.3 516,677 - LRK53_RS02215 0.36 +0.9 516,754 + LRK53_RS02215 0.43 -0.3 516,754 + LRK53_RS02215 0.43 -0.3 516,754 + LRK53_RS02215 0.43 +0.6 516,754 + LRK53_RS02215 0.43 +0.2 516,754 + LRK53_RS02215 0.43 -1.1 516,754 + LRK53_RS02215 0.43 -1.3 516,754 + LRK53_RS02215 0.43 -0.1 516,755 - LRK53_RS02215 0.44 -1.2 516,755 - LRK53_RS02215 0.44 -0.5 516,755 - LRK53_RS02215 0.44 -1.0 516,755 - LRK53_RS02215 0.44 -1.2 516,755 - LRK53_RS02215 0.44 -1.2 516,755 - LRK53_RS02215 0.44 -1.3 516,755 - LRK53_RS02215 0.44 -1.1 516,755 - LRK53_RS02215 0.44 +0.1 516,865 + LRK53_RS02215 0.55 +1.2 516,865 + LRK53_RS02215 0.55 -1.2 516,865 + LRK53_RS02215 0.55 -1.1 516,865 + LRK53_RS02215 0.55 -1.6 516,865 + LRK53_RS02215 0.55 -0.5 516,865 + LRK53_RS02215 0.55 -0.6 516,865 + LRK53_RS02215 0.55 -0.8 516,865 + LRK53_RS02215 0.55 -0.5 516,866 - LRK53_RS02215 0.55 +0.6 516,866 - LRK53_RS02215 0.55 +0.7 516,866 - LRK53_RS02215 0.55 +0.4 516,866 - LRK53_RS02215 0.55 -1.9 516,866 - LRK53_RS02215 0.55 +0.0 516,907 + LRK53_RS02215 0.59 +1.1 516,907 + LRK53_RS02215 0.59 -2.0 516,907 + LRK53_RS02215 0.59 -2.9 516,907 + LRK53_RS02215 0.59 +0.2 516,908 - LRK53_RS02215 0.59 -3.1 516,908 - LRK53_RS02215 0.59 -1.1 516,908 - LRK53_RS02215 0.59 -0.2 516,908 - LRK53_RS02215 0.59 -0.8 516,908 - LRK53_RS02215 0.59 -2.1 516,908 - LRK53_RS02215 0.59 +1.4 516,970 + LRK53_RS02215 0.65 -0.5 516,970 + LRK53_RS02215 0.65 -0.1 516,971 - LRK53_RS02215 0.65 +0.0 516,971 - LRK53_RS02215 0.65 +1.0 516,971 - LRK53_RS02215 0.65 -0.3 517,081 + LRK53_RS02215 0.76 -0.2 517,082 - LRK53_RS02215 0.77 +0.0 517,082 - LRK53_RS02215 0.77 -0.9 517,082 - LRK53_RS02215 0.77 -1.2 517,212 - LRK53_RS02215 0.90 +0.0 517,252 + +0.0 517,313 + -0.9 517,313 + +2.2 517,313 + -2.3 517,313 + -0.7 517,313 + +0.4 517,313 + +0.1 517,313 + -0.7 517,313 + -1.5 517,313 + -1.3 517,313 + -1.2 517,314 - -1.2 517,314 - -1.9 517,314 - -0.5 517,314 - -0.7 517,314 - -0.8 517,314 - -2.1 517,314 - -0.1 517,344 + +0.2 517,344 + -1.9 517,344 + -1.2 517,344 + -0.6 517,344 + -1.2 517,344 + +1.0 517,344 + +0.1 517,344 + +0.2 517,344 + +0.8 517,344 + -0.4 517,344 + -1.2 517,344 + +0.4 517,344 + -3.0 517,344 + -2.2 517,345 - -1.1 517,345 - +0.0 517,345 - -2.4 517,345 - -1.0 517,345 - -0.6 517,345 - -2.2 517,345 - -0.7 517,345 - -0.5 517,349 + -1.1 517,349 + -0.1 517,349 + -0.7 517,349 + -0.6 517,349 + -4.1 517,349 + +1.6 517,349 + -0.7 517,349 + +0.2 517,349 + +0.0 517,349 + -0.7 517,349 + +0.4 517,350 - -1.5 517,350 - -0.9 517,350 - -1.2 517,350 - -0.3 517,350 - +2.5 517,350 - -1.2 517,350 - -1.4 517,396 - -1.3 517,396 - -1.7 518,015 + LRK53_RS02225 0.33 -0.8 518,075 + LRK53_RS02225 0.41 -0.4 518,075 + LRK53_RS02225 0.41 -0.3 518,075 + LRK53_RS02225 0.41 +0.0 518,075 + LRK53_RS02225 0.41 +1.2 518,075 + LRK53_RS02225 0.41 -1.1 518,076 - LRK53_RS02225 0.41 +0.9 518,076 - LRK53_RS02225 0.41 -0.5 518,076 - LRK53_RS02225 0.41 +0.4 518,177 + LRK53_RS02225 0.55 -1.3 518,177 + LRK53_RS02225 0.55 -1.1 518,177 + LRK53_RS02225 0.55 -1.2
Or see this region's nucleotide sequence