Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01800

Experiment: planktonic; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01790 and LRK53_RS01795 are separated by 191 nucleotidesLRK53_RS01795 and LRK53_RS01800 are separated by 36 nucleotidesLRK53_RS01800 and LRK53_RS01805 are separated by 46 nucleotidesLRK53_RS01805 and LRK53_RS01810 are separated by 47 nucleotides LRK53_RS01790: LRK53_RS01790 - 6-phosphofructokinase, at 419,890 to 421,167 _RS01790 LRK53_RS01795: LRK53_RS01795 - adenylate kinase, at 421,359 to 421,943 _RS01795 LRK53_RS01800: LRK53_RS01800 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 421,980 to 423,425 _RS01800 LRK53_RS01805: LRK53_RS01805 - LON peptidase substrate-binding domain-containing protein, at 423,472 to 424,080 _RS01805 LRK53_RS01810: LRK53_RS01810 - NAD(P)-dependent oxidoreductase, at 424,128 to 424,946 _RS01810 Position (kb) 421 422 423 424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 421.034 kb on + strand, within LRK53_RS01790at 421.035 kb on - strand, within LRK53_RS01790at 421.035 kb on - strand, within LRK53_RS01790at 421.035 kb on - strand, within LRK53_RS01790at 421.121 kb on + strandat 421.121 kb on + strandat 421.121 kb on + strandat 421.121 kb on + strandat 421.121 kb on + strandat 421.122 kb on - strandat 421.122 kb on - strandat 421.122 kb on - strandat 421.122 kb on - strandat 421.232 kb on + strandat 421.232 kb on + strandat 421.232 kb on + strandat 421.233 kb on - strandat 421.233 kb on - strandat 421.233 kb on - strandat 421.233 kb on - strandat 421.233 kb on - strandat 422.082 kb on + strandat 422.082 kb on + strandat 422.083 kb on - strandat 422.136 kb on + strand, within LRK53_RS01800at 422.136 kb on + strand, within LRK53_RS01800at 422.137 kb on - strand, within LRK53_RS01800at 422.137 kb on - strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.218 kb on - strand, within LRK53_RS01800at 422.218 kb on - strand, within LRK53_RS01800at 422.218 kb on - strand, within LRK53_RS01800at 422.218 kb on - strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.242 kb on - strand, within LRK53_RS01800at 422.242 kb on - strand, within LRK53_RS01800at 422.242 kb on - strand, within LRK53_RS01800at 422.442 kb on + strand, within LRK53_RS01800at 422.442 kb on + strand, within LRK53_RS01800at 422.442 kb on + strand, within LRK53_RS01800at 422.442 kb on + strand, within LRK53_RS01800at 422.442 kb on + strand, within LRK53_RS01800at 422.443 kb on - strand, within LRK53_RS01800at 422.443 kb on - strand, within LRK53_RS01800at 422.443 kb on - strand, within LRK53_RS01800at 422.443 kb on - strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.629 kb on - strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.048 kb on + strand, within LRK53_RS01800at 423.049 kb on - strand, within LRK53_RS01800at 423.049 kb on - strand, within LRK53_RS01800at 423.086 kb on + strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.087 kb on - strand, within LRK53_RS01800at 423.460 kb on + strandat 423.461 kb on - strandat 423.461 kb on - strandat 423.461 kb on - strandat 423.461 kb on - strandat 423.578 kb on - strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.581 kb on + strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.582 kb on - strand, within LRK53_RS01805at 423.771 kb on - strand, within LRK53_RS01805at 424.094 kb on + strandat 424.094 kb on + strandat 424.094 kb on + strandat 424.095 kb on - strandat 424.095 kb on - strandat 424.095 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM;
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421,034 + LRK53_RS01790 0.90 +0.3
421,035 - LRK53_RS01790 0.90 +0.1
421,035 - LRK53_RS01790 0.90 -0.2
421,035 - LRK53_RS01790 0.90 -0.2
421,121 + +3.1
421,121 + -0.6
421,121 + -0.7
421,121 + -1.5
421,121 + -1.7
421,122 - -0.8
421,122 - -1.4
421,122 - -0.6
421,122 - +0.1
421,232 + -0.2
421,232 + +1.1
421,232 + +0.1
421,233 - +1.1
421,233 - -0.9
421,233 - -0.9
421,233 - -1.5
421,233 - -0.4
422,082 + -0.0
422,082 + -0.3
422,083 - -1.4
422,136 + LRK53_RS01800 0.11 +1.7
422,136 + LRK53_RS01800 0.11 +1.2
422,137 - LRK53_RS01800 0.11 -0.7
422,137 - LRK53_RS01800 0.11 -0.4
422,217 + LRK53_RS01800 0.16 -0.4
422,217 + LRK53_RS01800 0.16 -0.3
422,217 + LRK53_RS01800 0.16 -4.6
422,217 + LRK53_RS01800 0.16 -0.7
422,217 + LRK53_RS01800 0.16 -0.2
422,217 + LRK53_RS01800 0.16 -0.2
422,217 + LRK53_RS01800 0.16 -1.5
422,217 + LRK53_RS01800 0.16 -1.8
422,217 + LRK53_RS01800 0.16 -0.8
422,217 + LRK53_RS01800 0.16 -3.0
422,218 - LRK53_RS01800 0.16 -0.8
422,218 - LRK53_RS01800 0.16 -0.3
422,218 - LRK53_RS01800 0.16 -1.5
422,218 - LRK53_RS01800 0.16 -2.2
422,241 + LRK53_RS01800 0.18 -1.5
422,241 + LRK53_RS01800 0.18 -1.0
422,241 + LRK53_RS01800 0.18 -0.0
422,241 + LRK53_RS01800 0.18 -1.0
422,241 + LRK53_RS01800 0.18 -1.4
422,241 + LRK53_RS01800 0.18 +0.3
422,241 + LRK53_RS01800 0.18 +1.8
422,241 + LRK53_RS01800 0.18 -1.7
422,241 + LRK53_RS01800 0.18 +0.2
422,242 - LRK53_RS01800 0.18 -1.7
422,242 - LRK53_RS01800 0.18 +0.7
422,242 - LRK53_RS01800 0.18 -0.4
422,442 + LRK53_RS01800 0.32 -1.1
422,442 + LRK53_RS01800 0.32 -0.3
422,442 + LRK53_RS01800 0.32 -0.8
422,442 + LRK53_RS01800 0.32 -0.4
422,442 + LRK53_RS01800 0.32 +0.5
422,443 - LRK53_RS01800 0.32 -1.1
422,443 - LRK53_RS01800 0.32 +0.9
422,443 - LRK53_RS01800 0.32 -3.2
422,443 - LRK53_RS01800 0.32 -0.5
422,550 + LRK53_RS01800 0.39 -0.3
422,550 + LRK53_RS01800 0.39 -1.0
422,550 + LRK53_RS01800 0.39 -0.9
422,550 + LRK53_RS01800 0.39 -0.0
422,550 + LRK53_RS01800 0.39 -0.4
422,550 + LRK53_RS01800 0.39 -0.4
422,550 + LRK53_RS01800 0.39 -1.9
422,550 + LRK53_RS01800 0.39 -2.2
422,551 - LRK53_RS01800 0.39 -0.0
422,551 - LRK53_RS01800 0.39 -1.5
422,551 - LRK53_RS01800 0.39 -0.2
422,551 - LRK53_RS01800 0.39 -1.5
422,629 - LRK53_RS01800 0.45 -1.3
423,048 + LRK53_RS01800 0.74 -0.2
423,048 + LRK53_RS01800 0.74 -0.0
423,048 + LRK53_RS01800 0.74 -2.2
423,048 + LRK53_RS01800 0.74 -0.4
423,048 + LRK53_RS01800 0.74 +1.2
423,048 + LRK53_RS01800 0.74 +0.3
423,049 - LRK53_RS01800 0.74 -0.6
423,049 - LRK53_RS01800 0.74 -0.8
423,086 + LRK53_RS01800 0.76 +0.3
423,087 - LRK53_RS01800 0.77 -0.3
423,087 - LRK53_RS01800 0.77 +0.2
423,087 - LRK53_RS01800 0.77 -1.2
423,087 - LRK53_RS01800 0.77 -0.5
423,087 - LRK53_RS01800 0.77 -0.4
423,087 - LRK53_RS01800 0.77 -0.9
423,460 + +0.1
423,461 - +0.2
423,461 - +0.5
423,461 - -0.2
423,461 - -1.4
423,578 - LRK53_RS01805 0.17 -1.7
423,581 + LRK53_RS01805 0.18 +0.3
423,581 + LRK53_RS01805 0.18 -0.2
423,581 + LRK53_RS01805 0.18 -1.6
423,581 + LRK53_RS01805 0.18 -0.9
423,581 + LRK53_RS01805 0.18 -0.7
423,581 + LRK53_RS01805 0.18 -1.5
423,581 + LRK53_RS01805 0.18 -1.5
423,581 + LRK53_RS01805 0.18 +0.2
423,581 + LRK53_RS01805 0.18 -0.0
423,581 + LRK53_RS01805 0.18 -0.0
423,581 + LRK53_RS01805 0.18 -0.5
423,581 + LRK53_RS01805 0.18 -0.0
423,581 + LRK53_RS01805 0.18 -0.7
423,582 - LRK53_RS01805 0.18 +0.6
423,582 - LRK53_RS01805 0.18 -1.0
423,582 - LRK53_RS01805 0.18 -1.7
423,582 - LRK53_RS01805 0.18 -0.8
423,582 - LRK53_RS01805 0.18 -0.0
423,582 - LRK53_RS01805 0.18 +0.0
423,582 - LRK53_RS01805 0.18 -1.7
423,582 - LRK53_RS01805 0.18 -4.0
423,582 - LRK53_RS01805 0.18 -0.0
423,582 - LRK53_RS01805 0.18 +0.1
423,582 - LRK53_RS01805 0.18 +0.2
423,582 - LRK53_RS01805 0.18 -1.1
423,771 - LRK53_RS01805 0.49 +1.6
424,094 + -0.7
424,094 + -0.0
424,094 + +0.7
424,095 - -0.3
424,095 - -1.2
424,095 - -0.2

Or see this region's nucleotide sequence