Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01705

Experiment: planktonic; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01700 and LRK53_RS01705 are separated by 70 nucleotidesLRK53_RS01705 and LRK53_RS01710 overlap by 11 nucleotidesLRK53_RS01710 and LRK53_RS01715 are separated by 10 nucleotides LRK53_RS01700: LRK53_RS01700 - glycosyltransferase, at 399,632 to 400,759 _RS01700 LRK53_RS01705: LRK53_RS01705 - O-antigen ligase family protein, at 400,830 to 402,161 _RS01705 LRK53_RS01710: LRK53_RS01710 - glycosyltransferase family 2 protein, at 402,151 to 402,903 _RS01710 LRK53_RS01715: LRK53_RS01715 - glycosyltransferase family 4 protein, at 402,914 to 403,990 _RS01715 Position (kb) 400 401 402 403Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 400.098 kb on - strand, within LRK53_RS01700at 400.460 kb on + strand, within LRK53_RS01700at 400.461 kb on - strand, within LRK53_RS01700at 400.796 kb on + strandat 400.796 kb on + strandat 400.796 kb on + strandat 400.796 kb on + strandat 400.796 kb on + strandat 400.796 kb on + strandat 400.796 kb on + strandat 400.797 kb on - strandat 400.797 kb on - strandat 400.797 kb on - strandat 401.037 kb on + strand, within LRK53_RS01705at 401.037 kb on + strand, within LRK53_RS01705at 401.037 kb on + strand, within LRK53_RS01705at 401.038 kb on - strand, within LRK53_RS01705at 401.038 kb on - strand, within LRK53_RS01705at 401.038 kb on - strand, within LRK53_RS01705at 401.119 kb on - strand, within LRK53_RS01705at 401.136 kb on + strand, within LRK53_RS01705at 401.136 kb on + strand, within LRK53_RS01705at 401.136 kb on + strand, within LRK53_RS01705at 401.136 kb on + strand, within LRK53_RS01705at 401.136 kb on + strand, within LRK53_RS01705at 401.137 kb on - strand, within LRK53_RS01705at 401.137 kb on - strand, within LRK53_RS01705at 401.137 kb on - strand, within LRK53_RS01705at 401.181 kb on + strand, within LRK53_RS01705at 401.181 kb on + strand, within LRK53_RS01705at 401.181 kb on + strand, within LRK53_RS01705at 401.181 kb on + strand, within LRK53_RS01705at 401.181 kb on + strand, within LRK53_RS01705at 401.181 kb on + strand, within LRK53_RS01705at 401.182 kb on - strand, within LRK53_RS01705at 401.407 kb on + strand, within LRK53_RS01705at 401.407 kb on + strand, within LRK53_RS01705at 401.407 kb on + strand, within LRK53_RS01705at 401.407 kb on + strand, within LRK53_RS01705at 401.407 kb on + strand, within LRK53_RS01705at 401.408 kb on - strand, within LRK53_RS01705at 401.408 kb on - strand, within LRK53_RS01705at 401.408 kb on - strand, within LRK53_RS01705at 401.454 kb on + strand, within LRK53_RS01705at 401.454 kb on + strand, within LRK53_RS01705at 401.454 kb on + strand, within LRK53_RS01705at 401.454 kb on + strand, within LRK53_RS01705at 401.454 kb on + strand, within LRK53_RS01705at 401.454 kb on + strand, within LRK53_RS01705at 401.454 kb on + strand, within LRK53_RS01705at 401.454 kb on + strand, within LRK53_RS01705at 401.455 kb on - strand, within LRK53_RS01705at 401.455 kb on - strand, within LRK53_RS01705at 401.455 kb on - strand, within LRK53_RS01705at 401.455 kb on - strand, within LRK53_RS01705at 401.455 kb on - strand, within LRK53_RS01705at 401.455 kb on - strand, within LRK53_RS01705at 401.455 kb on - strand, within LRK53_RS01705at 401.455 kb on - strand, within LRK53_RS01705at 401.743 kb on - strand, within LRK53_RS01705at 401.751 kb on + strand, within LRK53_RS01705at 401.752 kb on - strand, within LRK53_RS01705at 402.006 kb on + strand, within LRK53_RS01705at 402.007 kb on - strand, within LRK53_RS01705at 402.007 kb on - strand, within LRK53_RS01705at 402.064 kb on + strandat 402.064 kb on + strandat 402.064 kb on + strandat 402.064 kb on + strandat 402.064 kb on + strandat 402.064 kb on + strandat 402.065 kb on - strandat 402.070 kb on + strandat 402.298 kb on + strand, within LRK53_RS01710at 402.298 kb on + strand, within LRK53_RS01710at 402.469 kb on + strand, within LRK53_RS01710at 402.470 kb on - strand, within LRK53_RS01710at 402.535 kb on + strand, within LRK53_RS01710at 402.535 kb on + strand, within LRK53_RS01710at 402.535 kb on + strand, within LRK53_RS01710at 402.535 kb on + strand, within LRK53_RS01710at 402.535 kb on + strand, within LRK53_RS01710at 402.535 kb on + strand, within LRK53_RS01710at 402.535 kb on + strand, within LRK53_RS01710at 402.535 kb on + strand, within LRK53_RS01710at 402.535 kb on + strand, within LRK53_RS01710at 402.535 kb on + strand, within LRK53_RS01710at 402.536 kb on - strand, within LRK53_RS01710at 402.536 kb on - strand, within LRK53_RS01710at 402.536 kb on - strand, within LRK53_RS01710at 402.536 kb on - strand, within LRK53_RS01710at 402.688 kb on + strand, within LRK53_RS01710at 402.689 kb on - strand, within LRK53_RS01710at 402.689 kb on - strand, within LRK53_RS01710at 402.689 kb on - strand, within LRK53_RS01710at 402.757 kb on + strand, within LRK53_RS01710at 402.757 kb on + strand, within LRK53_RS01710at 402.758 kb on - strand, within LRK53_RS01710at 402.781 kb on + strand, within LRK53_RS01710at 402.781 kb on + strand, within LRK53_RS01710at 402.781 kb on + strand, within LRK53_RS01710at 402.781 kb on + strand, within LRK53_RS01710at 402.782 kb on - strand, within LRK53_RS01710at 402.782 kb on - strand, within LRK53_RS01710at 402.782 kb on - strand, within LRK53_RS01710at 402.782 kb on - strand, within LRK53_RS01710at 402.782 kb on - strand, within LRK53_RS01710at 402.782 kb on - strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.784 kb on + strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.785 kb on - strand, within LRK53_RS01710at 402.788 kb on + strand, within LRK53_RS01710at 402.788 kb on + strand, within LRK53_RS01710at 402.788 kb on + strand, within LRK53_RS01710at 402.788 kb on + strand, within LRK53_RS01710at 402.788 kb on + strand, within LRK53_RS01710at 402.788 kb on + strand, within LRK53_RS01710at 402.788 kb on + strand, within LRK53_RS01710at 402.788 kb on + strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.789 kb on - strand, within LRK53_RS01710at 402.850 kb on + strandat 402.850 kb on + strandat 402.851 kb on - strandat 402.851 kb on - strandat 402.851 kb on - strandat 402.851 kb on - strandat 402.851 kb on - strandat 402.865 kb on + strandat 402.865 kb on + strandat 402.865 kb on + strandat 402.865 kb on + strandat 402.865 kb on + strandat 402.865 kb on + strandat 402.866 kb on - strandat 402.866 kb on - strandat 402.866 kb on - strandat 402.866 kb on - strandat 402.866 kb on - strandat 402.866 kb on - strandat 402.866 kb on - strandat 402.866 kb on - strandat 402.877 kb on + strandat 402.877 kb on + strandat 402.877 kb on + strandat 402.877 kb on + strandat 402.878 kb on - strandat 402.878 kb on - strandat 402.981 kb on + strandat 402.981 kb on + strandat 402.982 kb on - strandat 402.982 kb on - strandat 402.982 kb on - strandat 402.982 kb on - strandat 402.982 kb on - strandat 402.982 kb on - strandat 402.982 kb on - strandat 402.982 kb on - strandat 402.982 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM;
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400,098 - LRK53_RS01700 0.41 -0.8
400,460 + LRK53_RS01700 0.73 -0.2
400,461 - LRK53_RS01700 0.73 -0.6
400,796 + +0.1
400,796 + -2.1
400,796 + -0.2
400,796 + +1.0
400,796 + +0.7
400,796 + -0.9
400,796 + -0.0
400,797 - -0.2
400,797 - +0.8
400,797 - +0.6
401,037 + LRK53_RS01705 0.16 -0.8
401,037 + LRK53_RS01705 0.16 -1.9
401,037 + LRK53_RS01705 0.16 -1.7
401,038 - LRK53_RS01705 0.16 +0.1
401,038 - LRK53_RS01705 0.16 -0.0
401,038 - LRK53_RS01705 0.16 -1.1
401,119 - LRK53_RS01705 0.22 +0.1
401,136 + LRK53_RS01705 0.23 -0.9
401,136 + LRK53_RS01705 0.23 -1.9
401,136 + LRK53_RS01705 0.23 -0.8
401,136 + LRK53_RS01705 0.23 -0.5
401,136 + LRK53_RS01705 0.23 -2.1
401,137 - LRK53_RS01705 0.23 +0.1
401,137 - LRK53_RS01705 0.23 -2.0
401,137 - LRK53_RS01705 0.23 -0.8
401,181 + LRK53_RS01705 0.26 +0.6
401,181 + LRK53_RS01705 0.26 -0.9
401,181 + LRK53_RS01705 0.26 -0.2
401,181 + LRK53_RS01705 0.26 -0.8
401,181 + LRK53_RS01705 0.26 -1.9
401,181 + LRK53_RS01705 0.26 -0.9
401,182 - LRK53_RS01705 0.26 -0.7
401,407 + LRK53_RS01705 0.43 -0.9
401,407 + LRK53_RS01705 0.43 -1.8
401,407 + LRK53_RS01705 0.43 +0.8
401,407 + LRK53_RS01705 0.43 -2.0
401,407 + LRK53_RS01705 0.43 -0.0
401,408 - LRK53_RS01705 0.43 -0.0
401,408 - LRK53_RS01705 0.43 -0.3
401,408 - LRK53_RS01705 0.43 +1.1
401,454 + LRK53_RS01705 0.47 -0.8
401,454 + LRK53_RS01705 0.47 -2.8
401,454 + LRK53_RS01705 0.47 -1.9
401,454 + LRK53_RS01705 0.47 -0.1
401,454 + LRK53_RS01705 0.47 -2.7
401,454 + LRK53_RS01705 0.47 -0.6
401,454 + LRK53_RS01705 0.47 +0.1
401,454 + LRK53_RS01705 0.47 -0.4
401,455 - LRK53_RS01705 0.47 -1.0
401,455 - LRK53_RS01705 0.47 -0.8
401,455 - LRK53_RS01705 0.47 -0.6
401,455 - LRK53_RS01705 0.47 -1.2
401,455 - LRK53_RS01705 0.47 +0.3
401,455 - LRK53_RS01705 0.47 -1.4
401,455 - LRK53_RS01705 0.47 -1.2
401,455 - LRK53_RS01705 0.47 -2.0
401,743 - LRK53_RS01705 0.69 +1.5
401,751 + LRK53_RS01705 0.69 -0.4
401,752 - LRK53_RS01705 0.69 -3.4
402,006 + LRK53_RS01705 0.88 -0.6
402,007 - LRK53_RS01705 0.88 -0.2
402,007 - LRK53_RS01705 0.88 +0.6
402,064 + +0.4
402,064 + -1.7
402,064 + -0.0
402,064 + -0.0
402,064 + -0.3
402,064 + +0.1
402,065 - -0.8
402,070 + -1.6
402,298 + LRK53_RS01710 0.20 +1.0
402,298 + LRK53_RS01710 0.20 -0.4
402,469 + LRK53_RS01710 0.42 +0.3
402,470 - LRK53_RS01710 0.42 -0.4
402,535 + LRK53_RS01710 0.51 -0.6
402,535 + LRK53_RS01710 0.51 +2.1
402,535 + LRK53_RS01710 0.51 -0.9
402,535 + LRK53_RS01710 0.51 +2.1
402,535 + LRK53_RS01710 0.51 -0.0
402,535 + LRK53_RS01710 0.51 -1.1
402,535 + LRK53_RS01710 0.51 -1.3
402,535 + LRK53_RS01710 0.51 -1.3
402,535 + LRK53_RS01710 0.51 -1.7
402,535 + LRK53_RS01710 0.51 +0.3
402,536 - LRK53_RS01710 0.51 -0.2
402,536 - LRK53_RS01710 0.51 -1.0
402,536 - LRK53_RS01710 0.51 -1.4
402,536 - LRK53_RS01710 0.51 -0.2
402,688 + LRK53_RS01710 0.71 +0.1
402,689 - LRK53_RS01710 0.71 -2.6
402,689 - LRK53_RS01710 0.71 -2.3
402,689 - LRK53_RS01710 0.71 -3.3
402,757 + LRK53_RS01710 0.80 -1.2
402,757 + LRK53_RS01710 0.80 -1.9
402,758 - LRK53_RS01710 0.81 -2.1
402,781 + LRK53_RS01710 0.84 -1.1
402,781 + LRK53_RS01710 0.84 -0.0
402,781 + LRK53_RS01710 0.84 -0.4
402,781 + LRK53_RS01710 0.84 +3.7
402,782 - LRK53_RS01710 0.84 -1.7
402,782 - LRK53_RS01710 0.84 -1.0
402,782 - LRK53_RS01710 0.84 -0.9
402,782 - LRK53_RS01710 0.84 -0.3
402,782 - LRK53_RS01710 0.84 -1.3
402,782 - LRK53_RS01710 0.84 +0.4
402,784 + LRK53_RS01710 0.84 -2.2
402,784 + LRK53_RS01710 0.84 -0.6
402,784 + LRK53_RS01710 0.84 -2.0
402,784 + LRK53_RS01710 0.84 -1.9
402,784 + LRK53_RS01710 0.84 +1.1
402,784 + LRK53_RS01710 0.84 -1.1
402,784 + LRK53_RS01710 0.84 -2.2
402,784 + LRK53_RS01710 0.84 -1.6
402,784 + LRK53_RS01710 0.84 -1.5
402,784 + LRK53_RS01710 0.84 -2.6
402,784 + LRK53_RS01710 0.84 -1.8
402,784 + LRK53_RS01710 0.84 -0.3
402,784 + LRK53_RS01710 0.84 -1.3
402,784 + LRK53_RS01710 0.84 +0.1
402,784 + LRK53_RS01710 0.84 -1.0
402,784 + LRK53_RS01710 0.84 +0.6
402,784 + LRK53_RS01710 0.84 -0.8
402,784 + LRK53_RS01710 0.84 +0.8
402,784 + LRK53_RS01710 0.84 -0.0
402,784 + LRK53_RS01710 0.84 -0.7
402,784 + LRK53_RS01710 0.84 -1.8
402,784 + LRK53_RS01710 0.84 -1.0
402,784 + LRK53_RS01710 0.84 +1.3
402,784 + LRK53_RS01710 0.84 -2.6
402,784 + LRK53_RS01710 0.84 -0.8
402,784 + LRK53_RS01710 0.84 -0.4
402,784 + LRK53_RS01710 0.84 +1.1
402,784 + LRK53_RS01710 0.84 -0.9
402,784 + LRK53_RS01710 0.84 -0.4
402,785 - LRK53_RS01710 0.84 -2.4
402,785 - LRK53_RS01710 0.84 +1.2
402,785 - LRK53_RS01710 0.84 -0.5
402,785 - LRK53_RS01710 0.84 -0.9
402,785 - LRK53_RS01710 0.84 -0.6
402,785 - LRK53_RS01710 0.84 +0.2
402,785 - LRK53_RS01710 0.84 -0.7
402,785 - LRK53_RS01710 0.84 -0.9
402,785 - LRK53_RS01710 0.84 -1.3
402,785 - LRK53_RS01710 0.84 -1.5
402,785 - LRK53_RS01710 0.84 -1.2
402,785 - LRK53_RS01710 0.84 +0.1
402,785 - LRK53_RS01710 0.84 -1.1
402,785 - LRK53_RS01710 0.84 -2.4
402,785 - LRK53_RS01710 0.84 +1.0
402,785 - LRK53_RS01710 0.84 +0.1
402,785 - LRK53_RS01710 0.84 +0.1
402,785 - LRK53_RS01710 0.84 -1.2
402,785 - LRK53_RS01710 0.84 -1.0
402,785 - LRK53_RS01710 0.84 -2.6
402,785 - LRK53_RS01710 0.84 +0.6
402,785 - LRK53_RS01710 0.84 -0.7
402,785 - LRK53_RS01710 0.84 -1.4
402,785 - LRK53_RS01710 0.84 -1.1
402,785 - LRK53_RS01710 0.84 +0.3
402,785 - LRK53_RS01710 0.84 -1.5
402,785 - LRK53_RS01710 0.84 -0.7
402,788 + LRK53_RS01710 0.85 -0.0
402,788 + LRK53_RS01710 0.85 +0.1
402,788 + LRK53_RS01710 0.85 +0.6
402,788 + LRK53_RS01710 0.85 -0.0
402,788 + LRK53_RS01710 0.85 -1.4
402,788 + LRK53_RS01710 0.85 -0.3
402,788 + LRK53_RS01710 0.85 -0.9
402,788 + LRK53_RS01710 0.85 -1.1
402,789 - LRK53_RS01710 0.85 -1.8
402,789 - LRK53_RS01710 0.85 +0.6
402,789 - LRK53_RS01710 0.85 +1.7
402,789 - LRK53_RS01710 0.85 -1.1
402,789 - LRK53_RS01710 0.85 -0.3
402,789 - LRK53_RS01710 0.85 +0.3
402,789 - LRK53_RS01710 0.85 -0.2
402,789 - LRK53_RS01710 0.85 -0.0
402,789 - LRK53_RS01710 0.85 -2.3
402,789 - LRK53_RS01710 0.85 -2.0
402,789 - LRK53_RS01710 0.85 +0.3
402,850 + -0.9
402,850 + -1.4
402,851 - -1.0
402,851 - -0.4
402,851 - -1.7
402,851 - -0.1
402,851 - +0.3
402,865 + -1.1
402,865 + -0.4
402,865 + +0.6
402,865 + -0.8
402,865 + -0.0
402,865 + -0.2
402,866 - -2.1
402,866 - +0.6
402,866 - -0.4
402,866 - -1.5
402,866 - -0.0
402,866 - +0.4
402,866 - +0.1
402,866 - -1.7
402,877 + -0.9
402,877 + -1.0
402,877 + -1.2
402,877 + -0.4
402,878 - +0.1
402,878 - -2.1
402,981 + +0.2
402,981 + -0.4
402,982 - -1.5
402,982 - +0.9
402,982 - -0.1
402,982 - -0.2
402,982 - -0.7
402,982 - -0.4
402,982 - -0.4
402,982 - -0.8
402,982 - -1.4

Or see this region's nucleotide sequence