Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01435

Experiment: planktonic; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01420 and LRK53_RS01425 are separated by 32 nucleotidesLRK53_RS01425 and LRK53_RS01430 overlap by 8 nucleotidesLRK53_RS01430 and LRK53_RS01435 are separated by 20 nucleotidesLRK53_RS01435 and LRK53_RS01440 are separated by 11 nucleotidesLRK53_RS01440 and LRK53_RS01445 overlap by 4 nucleotides LRK53_RS01420: LRK53_RS01420 - hypothetical protein, at 344,306 to 344,689 _RS01420 LRK53_RS01425: LRK53_RS01425 - hypothetical protein, at 344,722 to 345,126 _RS01425 LRK53_RS01430: LRK53_RS01430 - helix-turn-helix transcriptional regulator, at 345,119 to 345,319 _RS01430 LRK53_RS01435: LRK53_RS01435 - alpha/beta hydrolase, at 345,340 to 346,893 _RS01435 LRK53_RS01440: LRK53_RS01440 - ATP-binding cassette domain-containing protein, at 346,905 to 347,639 _RS01440 LRK53_RS01445: LRK53_RS01445 - ABC transporter permease subunit, at 347,636 to 348,841 _RS01445 Position (kb) 345 346 347Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.363 kb on + strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.364 kb on - strand, within LRK53_RS01420at 344.443 kb on - strand, within LRK53_RS01420at 344.453 kb on + strand, within LRK53_RS01420at 344.453 kb on + strand, within LRK53_RS01420at 344.493 kb on + strand, within LRK53_RS01420at 344.493 kb on + strand, within LRK53_RS01420at 344.493 kb on + strand, within LRK53_RS01420at 344.494 kb on - strand, within LRK53_RS01420at 344.586 kb on + strand, within LRK53_RS01420at 344.586 kb on + strand, within LRK53_RS01420at 344.587 kb on - strand, within LRK53_RS01420at 344.587 kb on - strand, within LRK53_RS01420at 344.587 kb on - strand, within LRK53_RS01420at 344.587 kb on - strand, within LRK53_RS01420at 344.587 kb on - strand, within LRK53_RS01420at 344.587 kb on - strand, within LRK53_RS01420at 344.596 kb on + strand, within LRK53_RS01420at 344.596 kb on + strand, within LRK53_RS01420at 344.596 kb on + strand, within LRK53_RS01420at 344.596 kb on + strand, within LRK53_RS01420at 344.596 kb on + strand, within LRK53_RS01420at 344.597 kb on - strand, within LRK53_RS01420at 344.708 kb on + strandat 344.708 kb on + strandat 344.708 kb on + strandat 344.708 kb on + strandat 344.708 kb on + strandat 344.709 kb on - strandat 344.736 kb on + strandat 344.743 kb on + strandat 344.743 kb on + strandat 344.743 kb on + strandat 344.743 kb on + strandat 344.744 kb on - strandat 344.744 kb on - strandat 344.744 kb on - strandat 344.744 kb on - strandat 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.776 kb on + strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.777 kb on - strand, within LRK53_RS01425at 344.954 kb on + strand, within LRK53_RS01425at 344.954 kb on + strand, within LRK53_RS01425at 344.954 kb on + strand, within LRK53_RS01425at 345.124 kb on + strandat 345.124 kb on + strandat 345.124 kb on + strandat 345.124 kb on + strandat 345.124 kb on + strandat 345.124 kb on + strandat 345.125 kb on - strandat 345.125 kb on - strandat 345.230 kb on + strand, within LRK53_RS01430at 345.926 kb on - strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.929 kb on - strand, within LRK53_RS01435at 345.929 kb on - strand, within LRK53_RS01435at 345.929 kb on - strand, within LRK53_RS01435at 345.929 kb on - strand, within LRK53_RS01435at 346.013 kb on - strand, within LRK53_RS01435at 346.036 kb on + strand, within LRK53_RS01435at 346.216 kb on + strand, within LRK53_RS01435at 346.279 kb on + strand, within LRK53_RS01435at 346.280 kb on - strand, within LRK53_RS01435at 346.342 kb on + strand, within LRK53_RS01435at 346.345 kb on - strand, within LRK53_RS01435at 346.345 kb on - strand, within LRK53_RS01435at 346.475 kb on - strand, within LRK53_RS01435at 346.663 kb on + strand, within LRK53_RS01435at 346.663 kb on + strand, within LRK53_RS01435at 346.663 kb on + strand, within LRK53_RS01435at 346.664 kb on - strand, within LRK53_RS01435at 346.731 kb on - strand, within LRK53_RS01435at 346.891 kb on + strandat 347.046 kb on + strand, within LRK53_RS01440at 347.046 kb on + strand, within LRK53_RS01440at 347.046 kb on + strand, within LRK53_RS01440at 347.046 kb on + strand, within LRK53_RS01440at 347.047 kb on - strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.161 kb on - strand, within LRK53_RS01440at 347.193 kb on + strand, within LRK53_RS01440at 347.194 kb on - strand, within LRK53_RS01440at 347.194 kb on - strand, within LRK53_RS01440at 347.194 kb on - strand, within LRK53_RS01440at 347.347 kb on + strand, within LRK53_RS01440at 347.348 kb on - strand, within LRK53_RS01440at 347.858 kb on + strand, within LRK53_RS01445at 347.859 kb on - strand, within LRK53_RS01445

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM;
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344,363 + LRK53_RS01420 0.15 -1.3
344,363 + LRK53_RS01420 0.15 -1.5
344,363 + LRK53_RS01420 0.15 -1.3
344,363 + LRK53_RS01420 0.15 -1.0
344,363 + LRK53_RS01420 0.15 +0.1
344,363 + LRK53_RS01420 0.15 +2.7
344,363 + LRK53_RS01420 0.15 +0.4
344,363 + LRK53_RS01420 0.15 -1.3
344,363 + LRK53_RS01420 0.15 -1.3
344,363 + LRK53_RS01420 0.15 -0.0
344,363 + LRK53_RS01420 0.15 -1.1
344,363 + LRK53_RS01420 0.15 -0.6
344,363 + LRK53_RS01420 0.15 -0.8
344,363 + LRK53_RS01420 0.15 -1.2
344,363 + LRK53_RS01420 0.15 -0.6
344,363 + LRK53_RS01420 0.15 -0.6
344,363 + LRK53_RS01420 0.15 -1.9
344,363 + LRK53_RS01420 0.15 +0.5
344,363 + LRK53_RS01420 0.15 -3.3
344,363 + LRK53_RS01420 0.15 -2.2
344,363 + LRK53_RS01420 0.15 -1.7
344,364 - LRK53_RS01420 0.15 -2.6
344,364 - LRK53_RS01420 0.15 -1.9
344,364 - LRK53_RS01420 0.15 +3.1
344,364 - LRK53_RS01420 0.15 -0.8
344,364 - LRK53_RS01420 0.15 -0.8
344,364 - LRK53_RS01420 0.15 -1.0
344,364 - LRK53_RS01420 0.15 -0.3
344,364 - LRK53_RS01420 0.15 -1.4
344,364 - LRK53_RS01420 0.15 -0.7
344,364 - LRK53_RS01420 0.15 -1.5
344,364 - LRK53_RS01420 0.15 +0.3
344,364 - LRK53_RS01420 0.15 -0.1
344,364 - LRK53_RS01420 0.15 -1.1
344,364 - LRK53_RS01420 0.15 +0.7
344,364 - LRK53_RS01420 0.15 +1.8
344,364 - LRK53_RS01420 0.15 -0.3
344,364 - LRK53_RS01420 0.15 -1.3
344,364 - LRK53_RS01420 0.15 -0.7
344,443 - LRK53_RS01420 0.36 -1.4
344,453 + LRK53_RS01420 0.38 -0.7
344,453 + LRK53_RS01420 0.38 -0.9
344,493 + LRK53_RS01420 0.49 +0.1
344,493 + LRK53_RS01420 0.49 +1.7
344,493 + LRK53_RS01420 0.49 -2.9
344,494 - LRK53_RS01420 0.49 -2.4
344,586 + LRK53_RS01420 0.73 -0.6
344,586 + LRK53_RS01420 0.73 -1.7
344,587 - LRK53_RS01420 0.73 -0.9
344,587 - LRK53_RS01420 0.73 -0.5
344,587 - LRK53_RS01420 0.73 -2.0
344,587 - LRK53_RS01420 0.73 +0.8
344,587 - LRK53_RS01420 0.73 +0.0
344,587 - LRK53_RS01420 0.73 -1.1
344,596 + LRK53_RS01420 0.76 -3.3
344,596 + LRK53_RS01420 0.76 -1.9
344,596 + LRK53_RS01420 0.76 +1.0
344,596 + LRK53_RS01420 0.76 -0.1
344,596 + LRK53_RS01420 0.76 -0.0
344,597 - LRK53_RS01420 0.76 -0.2
344,708 + +0.1
344,708 + -0.6
344,708 + -0.3
344,708 + +0.1
344,708 + +1.4
344,709 - -2.1
344,736 + -0.5
344,743 + -1.7
344,743 + -1.1
344,743 + -1.2
344,743 + -2.0
344,744 - -1.8
344,744 - -1.1
344,744 - +0.3
344,744 - +0.6
344,776 + LRK53_RS01425 0.13 -0.2
344,776 + LRK53_RS01425 0.13 -0.6
344,776 + LRK53_RS01425 0.13 -0.3
344,776 + LRK53_RS01425 0.13 -1.2
344,776 + LRK53_RS01425 0.13 -0.9
344,776 + LRK53_RS01425 0.13 -1.5
344,776 + LRK53_RS01425 0.13 -0.9
344,776 + LRK53_RS01425 0.13 -1.9
344,776 + LRK53_RS01425 0.13 -0.0
344,776 + LRK53_RS01425 0.13 -0.7
344,776 + LRK53_RS01425 0.13 -0.0
344,776 + LRK53_RS01425 0.13 -0.2
344,776 + LRK53_RS01425 0.13 -0.2
344,776 + LRK53_RS01425 0.13 -1.7
344,776 + LRK53_RS01425 0.13 +0.5
344,776 + LRK53_RS01425 0.13 -1.0
344,777 - LRK53_RS01425 0.14 -1.8
344,777 - LRK53_RS01425 0.14 -0.0
344,777 - LRK53_RS01425 0.14 +1.1
344,777 - LRK53_RS01425 0.14 -1.9
344,777 - LRK53_RS01425 0.14 -0.3
344,777 - LRK53_RS01425 0.14 +2.1
344,777 - LRK53_RS01425 0.14 -0.2
344,777 - LRK53_RS01425 0.14 +1.1
344,777 - LRK53_RS01425 0.14 -0.9
344,777 - LRK53_RS01425 0.14 -1.3
344,777 - LRK53_RS01425 0.14 -0.0
344,777 - LRK53_RS01425 0.14 -0.4
344,777 - LRK53_RS01425 0.14 -1.3
344,777 - LRK53_RS01425 0.14 -2.3
344,777 - LRK53_RS01425 0.14 -1.9
344,777 - LRK53_RS01425 0.14 -0.4
344,777 - LRK53_RS01425 0.14 -0.4
344,777 - LRK53_RS01425 0.14 -1.2
344,777 - LRK53_RS01425 0.14 -0.1
344,777 - LRK53_RS01425 0.14 +0.8
344,777 - LRK53_RS01425 0.14 -1.5
344,777 - LRK53_RS01425 0.14 -1.6
344,954 + LRK53_RS01425 0.57 -1.1
344,954 + LRK53_RS01425 0.57 -4.0
344,954 + LRK53_RS01425 0.57 -1.0
345,124 + -0.7
345,124 + -1.4
345,124 + -1.5
345,124 + -0.2
345,124 + -0.4
345,124 + +0.3
345,125 - -1.6
345,125 - +0.5
345,230 + LRK53_RS01430 0.55 -0.9
345,926 - LRK53_RS01435 0.38 +0.6
345,928 + LRK53_RS01435 0.38 -0.2
345,928 + LRK53_RS01435 0.38 +0.3
345,928 + LRK53_RS01435 0.38 -1.7
345,928 + LRK53_RS01435 0.38 +0.0
345,928 + LRK53_RS01435 0.38 -0.9
345,928 + LRK53_RS01435 0.38 +1.7
345,929 - LRK53_RS01435 0.38 -1.8
345,929 - LRK53_RS01435 0.38 -0.6
345,929 - LRK53_RS01435 0.38 -0.7
345,929 - LRK53_RS01435 0.38 -1.0
346,013 - LRK53_RS01435 0.43 -0.4
346,036 + LRK53_RS01435 0.45 -0.2
346,216 + LRK53_RS01435 0.56 +0.6
346,279 + LRK53_RS01435 0.60 +0.1
346,280 - LRK53_RS01435 0.60 -1.2
346,342 + LRK53_RS01435 0.64 -1.3
346,345 - LRK53_RS01435 0.65 -0.8
346,345 - LRK53_RS01435 0.65 +0.3
346,475 - LRK53_RS01435 0.73 -2.7
346,663 + LRK53_RS01435 0.85 -1.0
346,663 + LRK53_RS01435 0.85 -1.9
346,663 + LRK53_RS01435 0.85 +0.8
346,664 - LRK53_RS01435 0.85 -1.4
346,731 - LRK53_RS01435 0.90 -0.9
346,891 + +0.1
347,046 + LRK53_RS01440 0.19 +1.1
347,046 + LRK53_RS01440 0.19 +1.1
347,046 + LRK53_RS01440 0.19 -1.4
347,046 + LRK53_RS01440 0.19 -2.3
347,047 - LRK53_RS01440 0.19 -0.7
347,160 + LRK53_RS01440 0.35 -1.1
347,160 + LRK53_RS01440 0.35 +1.6
347,160 + LRK53_RS01440 0.35 -0.8
347,160 + LRK53_RS01440 0.35 +1.4
347,160 + LRK53_RS01440 0.35 -0.5
347,161 - LRK53_RS01440 0.35 -0.0
347,193 + LRK53_RS01440 0.39 -0.3
347,194 - LRK53_RS01440 0.39 -0.6
347,194 - LRK53_RS01440 0.39 +0.1
347,194 - LRK53_RS01440 0.39 -0.0
347,347 + LRK53_RS01440 0.60 -1.3
347,348 - LRK53_RS01440 0.60 -1.3
347,858 + LRK53_RS01445 0.18 -0.9
347,859 - LRK53_RS01445 0.18 +2.1

Or see this region's nucleotide sequence