Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01255 and LRK53_RS01260 are separated by 43 nucleotides LRK53_RS01260 and LRK53_RS01265 are separated by 126 nucleotides
LRK53_RS01255: LRK53_RS01255 - coniferyl aldehyde dehydrogenase, at 310,103 to 311,485
_RS01255
LRK53_RS01260: LRK53_RS01260 - restriction endonuclease, at 311,529 to 311,813
_RS01260
LRK53_RS01265: LRK53_RS01265 - bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA, at 311,940 to 315,095
_RS01265
Position (kb) 311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 310.633 kb on - strand, within LRK53_RS01255 at 310.660 kb on - strand, within LRK53_RS01255 at 310.660 kb on - strand, within LRK53_RS01255 at 310.686 kb on + strand, within LRK53_RS01255 at 310.686 kb on + strand, within LRK53_RS01255 at 310.687 kb on - strand, within LRK53_RS01255 at 310.687 kb on - strand, within LRK53_RS01255 at 310.687 kb on - strand, within LRK53_RS01255 at 310.687 kb on - strand, within LRK53_RS01255 at 310.755 kb on + strand, within LRK53_RS01255 at 310.755 kb on + strand, within LRK53_RS01255 at 310.755 kb on + strand, within LRK53_RS01255 at 310.755 kb on + strand, within LRK53_RS01255 at 310.755 kb on + strand, within LRK53_RS01255 at 310.756 kb on - strand, within LRK53_RS01255 at 310.756 kb on - strand, within LRK53_RS01255 at 310.756 kb on - strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.031 kb on + strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.032 kb on - strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.145 kb on + strand, within LRK53_RS01255 at 311.146 kb on - strand, within LRK53_RS01255 at 311.146 kb on - strand, within LRK53_RS01255 at 311.146 kb on - strand, within LRK53_RS01255 at 311.154 kb on + strand, within LRK53_RS01255 at 311.154 kb on + strand, within LRK53_RS01255 at 311.154 kb on + strand, within LRK53_RS01255 at 311.155 kb on - strand, within LRK53_RS01255 at 311.155 kb on - strand, within LRK53_RS01255 at 311.155 kb on - strand, within LRK53_RS01255 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.575 kb on + strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.576 kb on - strand, within LRK53_RS01260 at 311.791 kb on + strand at 311.791 kb on + strand at 311.792 kb on - strand at 311.792 kb on - strand at 311.792 kb on - strand at 311.792 kb on - strand at 311.823 kb on + strand at 311.823 kb on + strand at 311.823 kb on + strand at 311.823 kb on + strand at 311.823 kb on + strand at 311.824 kb on - strand at 311.824 kb on - strand at 311.824 kb on - strand at 311.824 kb on - strand at 311.824 kb on - strand at 311.837 kb on + strand at 311.837 kb on + strand at 311.838 kb on - strand at 311.920 kb on + strand at 311.920 kb on + strand at 311.920 kb on + strand at 311.921 kb on - strand at 311.921 kb on - strand at 311.921 kb on - strand at 311.934 kb on + strand at 311.934 kb on + strand at 311.934 kb on + strand at 311.934 kb on + strand at 311.934 kb on + strand at 311.934 kb on + strand at 311.935 kb on - strand at 311.935 kb on - strand at 311.935 kb on - strand at 311.941 kb on + strand at 311.942 kb on - strand at 311.942 kb on - strand at 311.951 kb on + strand at 312.028 kb on + strand at 312.028 kb on + strand at 312.028 kb on + strand at 312.028 kb on + strand at 312.028 kb on + strand at 312.029 kb on - strand at 312.029 kb on - strand at 312.029 kb on - strand at 312.124 kb on + strand at 312.124 kb on + strand at 312.124 kb on + strand at 312.124 kb on + strand at 312.124 kb on + strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.125 kb on - strand at 312.126 kb on - strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.157 kb on + strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand at 312.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 310,633 - LRK53_RS01255 0.38 -3.2 310,660 - LRK53_RS01255 0.40 -0.9 310,660 - LRK53_RS01255 0.40 -2.6 310,686 + LRK53_RS01255 0.42 +0.0 310,686 + LRK53_RS01255 0.42 -0.8 310,687 - LRK53_RS01255 0.42 -0.9 310,687 - LRK53_RS01255 0.42 -1.9 310,687 - LRK53_RS01255 0.42 -0.4 310,687 - LRK53_RS01255 0.42 -0.3 310,755 + LRK53_RS01255 0.47 -0.2 310,755 + LRK53_RS01255 0.47 -2.8 310,755 + LRK53_RS01255 0.47 +0.4 310,755 + LRK53_RS01255 0.47 -1.6 310,755 + LRK53_RS01255 0.47 -1.1 310,756 - LRK53_RS01255 0.47 -1.3 310,756 - LRK53_RS01255 0.47 -0.6 310,756 - LRK53_RS01255 0.47 -1.1 311,031 + LRK53_RS01255 0.67 -1.2 311,031 + LRK53_RS01255 0.67 +2.1 311,031 + LRK53_RS01255 0.67 -0.1 311,031 + LRK53_RS01255 0.67 -1.8 311,031 + LRK53_RS01255 0.67 -2.2 311,031 + LRK53_RS01255 0.67 -1.5 311,031 + LRK53_RS01255 0.67 -1.5 311,031 + LRK53_RS01255 0.67 +1.6 311,031 + LRK53_RS01255 0.67 +0.8 311,032 - LRK53_RS01255 0.67 -0.4 311,032 - LRK53_RS01255 0.67 -0.8 311,032 - LRK53_RS01255 0.67 -0.7 311,032 - LRK53_RS01255 0.67 -2.0 311,032 - LRK53_RS01255 0.67 -0.3 311,032 - LRK53_RS01255 0.67 -1.6 311,032 - LRK53_RS01255 0.67 +1.4 311,145 + LRK53_RS01255 0.75 +1.6 311,145 + LRK53_RS01255 0.75 -1.7 311,145 + LRK53_RS01255 0.75 -1.5 311,145 + LRK53_RS01255 0.75 -0.0 311,145 + LRK53_RS01255 0.75 -0.6 311,145 + LRK53_RS01255 0.75 -0.1 311,145 + LRK53_RS01255 0.75 -0.2 311,146 - LRK53_RS01255 0.75 -1.2 311,146 - LRK53_RS01255 0.75 +0.1 311,146 - LRK53_RS01255 0.75 -0.7 311,154 + LRK53_RS01255 0.76 +0.2 311,154 + LRK53_RS01255 0.76 -0.4 311,154 + LRK53_RS01255 0.76 -3.0 311,155 - LRK53_RS01255 0.76 +1.0 311,155 - LRK53_RS01255 0.76 -0.2 311,155 - LRK53_RS01255 0.76 -0.6 311,575 + LRK53_RS01260 0.16 +0.7 311,575 + LRK53_RS01260 0.16 -1.4 311,575 + LRK53_RS01260 0.16 -0.6 311,575 + LRK53_RS01260 0.16 -1.2 311,575 + LRK53_RS01260 0.16 -2.6 311,575 + LRK53_RS01260 0.16 -1.2 311,575 + LRK53_RS01260 0.16 -0.4 311,575 + LRK53_RS01260 0.16 +0.0 311,575 + LRK53_RS01260 0.16 -2.1 311,575 + LRK53_RS01260 0.16 +0.7 311,575 + LRK53_RS01260 0.16 -1.5 311,575 + LRK53_RS01260 0.16 -0.4 311,575 + LRK53_RS01260 0.16 +0.1 311,575 + LRK53_RS01260 0.16 -0.4 311,575 + LRK53_RS01260 0.16 -0.2 311,575 + LRK53_RS01260 0.16 -0.1 311,575 + LRK53_RS01260 0.16 -1.8 311,575 + LRK53_RS01260 0.16 -1.6 311,575 + LRK53_RS01260 0.16 +0.1 311,575 + LRK53_RS01260 0.16 -1.6 311,575 + LRK53_RS01260 0.16 +0.1 311,575 + LRK53_RS01260 0.16 -0.3 311,575 + LRK53_RS01260 0.16 -1.2 311,575 + LRK53_RS01260 0.16 -1.5 311,575 + LRK53_RS01260 0.16 -2.1 311,575 + LRK53_RS01260 0.16 -1.3 311,575 + LRK53_RS01260 0.16 -0.0 311,575 + LRK53_RS01260 0.16 -2.3 311,575 + LRK53_RS01260 0.16 -1.8 311,576 - LRK53_RS01260 0.16 -2.2 311,576 - LRK53_RS01260 0.16 -1.0 311,576 - LRK53_RS01260 0.16 -1.4 311,576 - LRK53_RS01260 0.16 -1.2 311,576 - LRK53_RS01260 0.16 -1.1 311,576 - LRK53_RS01260 0.16 -1.3 311,576 - LRK53_RS01260 0.16 -1.3 311,576 - LRK53_RS01260 0.16 -1.2 311,576 - LRK53_RS01260 0.16 -0.6 311,576 - LRK53_RS01260 0.16 -2.4 311,576 - LRK53_RS01260 0.16 -0.4 311,576 - LRK53_RS01260 0.16 -1.4 311,576 - LRK53_RS01260 0.16 -1.2 311,576 - LRK53_RS01260 0.16 -0.7 311,576 - LRK53_RS01260 0.16 -2.8 311,576 - LRK53_RS01260 0.16 -0.6 311,576 - LRK53_RS01260 0.16 -0.2 311,576 - LRK53_RS01260 0.16 -0.1 311,576 - LRK53_RS01260 0.16 +0.1 311,576 - LRK53_RS01260 0.16 +2.1 311,576 - LRK53_RS01260 0.16 +0.6 311,576 - LRK53_RS01260 0.16 -0.7 311,576 - LRK53_RS01260 0.16 +1.0 311,576 - LRK53_RS01260 0.16 -1.9 311,576 - LRK53_RS01260 0.16 -0.1 311,576 - LRK53_RS01260 0.16 -1.6 311,791 + -1.6 311,791 + -1.5 311,792 - -1.7 311,792 - +0.7 311,792 - +0.6 311,792 - -0.7 311,823 + -0.4 311,823 + -1.3 311,823 + -1.8 311,823 + -2.9 311,823 + -0.5 311,824 - -1.3 311,824 - -0.6 311,824 - -0.6 311,824 - -0.2 311,824 - -1.3 311,837 + +0.9 311,837 + -0.7 311,838 - +0.3 311,920 + -0.6 311,920 + -1.6 311,920 + -0.4 311,921 - -1.8 311,921 - -1.3 311,921 - +0.3 311,934 + -1.4 311,934 + +1.1 311,934 + +0.6 311,934 + -1.2 311,934 + -0.0 311,934 + -2.1 311,935 - +0.3 311,935 - -0.4 311,935 - -0.3 311,941 + -1.1 311,942 - +0.6 311,942 - -0.6 311,951 + -0.9 312,028 + -0.2 312,028 + -1.1 312,028 + -0.0 312,028 + +0.2 312,028 + -0.9 312,029 - -0.2 312,029 - -0.4 312,029 - -1.0 312,124 + -1.7 312,124 + +0.3 312,124 + -2.0 312,124 + +1.0 312,124 + +0.2 312,125 - -1.2 312,125 - +1.6 312,125 - -1.9 312,125 - -0.9 312,125 - -1.2 312,125 - +0.1 312,125 - +1.6 312,125 - -0.7 312,125 - +0.2 312,125 - -1.2 312,125 - +0.3 312,125 - -3.7 312,125 - -0.7 312,125 - -1.3 312,125 - +0.6 312,126 - -0.7 312,157 + +0.8 312,157 + -0.9 312,157 + -2.5 312,157 + -0.0 312,157 + +0.7 312,157 + -0.3 312,157 + -1.2 312,157 + -0.7 312,157 + +0.3 312,157 + +1.6 312,157 + -1.4 312,157 + -1.7 312,157 + +2.6 312,157 + -1.0 312,157 + -2.3 312,157 + -0.6 312,157 + -2.6 312,157 + -0.8 312,157 + -2.3 312,157 + -0.2 312,157 + -0.4 312,158 - -1.2 312,158 - +0.6 312,158 - +1.3 312,158 - -0.8 312,158 - +0.1 312,158 - -1.6 312,158 - -0.9 312,158 - +0.6 312,158 - -1.3 312,158 - -0.9 312,158 - -0.7 312,158 - -0.8 312,158 - +0.1
Or see this region's nucleotide sequence