Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00880

Experiment: planktonic; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00875 and LRK53_RS00880 are separated by 50 nucleotidesLRK53_RS00880 and LRK53_RS00885 overlap by 4 nucleotides LRK53_RS00875: LRK53_RS00875 - penicillin-binding protein 1C, at 218,438 to 220,825 _RS00875 LRK53_RS00880: LRK53_RS00880 - TolC family protein, at 220,876 to 222,294 _RS00880 LRK53_RS00885: LRK53_RS00885 - efflux RND transporter periplasmic adaptor subunit, at 222,291 to 223,340 _RS00885 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 220.034 kb on + strand, within LRK53_RS00875at 220.035 kb on - strand, within LRK53_RS00875at 220.035 kb on - strand, within LRK53_RS00875at 220.035 kb on - strand, within LRK53_RS00875at 220.130 kb on + strand, within LRK53_RS00875at 220.131 kb on - strand, within LRK53_RS00875at 220.549 kb on - strand, within LRK53_RS00875at 220.751 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.850 kb on + strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.851 kb on - strandat 220.902 kb on + strandat 220.902 kb on + strandat 220.903 kb on - strandat 220.903 kb on - strandat 220.903 kb on - strandat 220.978 kb on + strandat 220.978 kb on + strandat 220.979 kb on - strandat 220.979 kb on - strandat 221.494 kb on + strand, within LRK53_RS00880at 221.494 kb on + strand, within LRK53_RS00880at 221.494 kb on + strand, within LRK53_RS00880at 221.494 kb on + strand, within LRK53_RS00880at 221.494 kb on + strand, within LRK53_RS00880at 221.494 kb on + strand, within LRK53_RS00880at 221.495 kb on - strand, within LRK53_RS00880at 221.495 kb on - strand, within LRK53_RS00880at 221.495 kb on - strand, within LRK53_RS00880at 221.495 kb on - strand, within LRK53_RS00880at 221.495 kb on - strand, within LRK53_RS00880at 221.495 kb on - strand, within LRK53_RS00880at 221.497 kb on - strand, within LRK53_RS00880at 221.497 kb on - strand, within LRK53_RS00880at 221.497 kb on - strand, within LRK53_RS00880at 221.530 kb on + strand, within LRK53_RS00880at 221.530 kb on + strand, within LRK53_RS00880at 221.530 kb on + strand, within LRK53_RS00880at 221.530 kb on + strand, within LRK53_RS00880at 221.531 kb on - strand, within LRK53_RS00880at 221.531 kb on - strand, within LRK53_RS00880at 221.531 kb on - strand, within LRK53_RS00880at 221.531 kb on - strand, within LRK53_RS00880at 221.531 kb on - strand, within LRK53_RS00880at 221.531 kb on - strand, within LRK53_RS00880at 221.867 kb on - strand, within LRK53_RS00880at 221.867 kb on - strand, within LRK53_RS00880at 221.867 kb on - strand, within LRK53_RS00880at 221.969 kb on - strand, within LRK53_RS00880at 221.969 kb on - strand, within LRK53_RS00880at 222.541 kb on + strand, within LRK53_RS00885at 222.541 kb on + strand, within LRK53_RS00885at 222.541 kb on + strand, within LRK53_RS00885at 222.541 kb on + strand, within LRK53_RS00885at 222.542 kb on - strand, within LRK53_RS00885at 222.542 kb on - strand, within LRK53_RS00885at 222.542 kb on - strand, within LRK53_RS00885at 222.542 kb on - strand, within LRK53_RS00885at 222.542 kb on - strand, within LRK53_RS00885at 222.542 kb on - strand, within LRK53_RS00885at 222.542 kb on - strand, within LRK53_RS00885at 222.542 kb on - strand, within LRK53_RS00885at 222.597 kb on + strand, within LRK53_RS00885at 222.598 kb on - strand, within LRK53_RS00885at 222.957 kb on + strand, within LRK53_RS00885at 222.957 kb on + strand, within LRK53_RS00885at 222.957 kb on + strand, within LRK53_RS00885at 222.957 kb on + strand, within LRK53_RS00885at 222.957 kb on + strand, within LRK53_RS00885at 222.957 kb on + strand, within LRK53_RS00885at 222.958 kb on - strand, within LRK53_RS00885at 222.958 kb on - strand, within LRK53_RS00885at 222.958 kb on - strand, within LRK53_RS00885at 222.958 kb on - strand, within LRK53_RS00885at 223.170 kb on + strand, within LRK53_RS00885at 223.170 kb on + strand, within LRK53_RS00885at 223.171 kb on - strand, within LRK53_RS00885

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM;
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220,034 + LRK53_RS00875 0.67 -1.0
220,035 - LRK53_RS00875 0.67 -0.8
220,035 - LRK53_RS00875 0.67 -0.5
220,035 - LRK53_RS00875 0.67 -0.4
220,130 + LRK53_RS00875 0.71 -1.5
220,131 - LRK53_RS00875 0.71 -0.8
220,549 - LRK53_RS00875 0.88 -1.0
220,751 + +0.7
220,850 + +0.4
220,850 + +0.1
220,850 + -1.5
220,850 + -1.8
220,850 + -0.7
220,850 + -1.0
220,850 + +0.2
220,850 + -2.0
220,850 + -0.0
220,850 + -0.3
220,850 + -1.7
220,850 + -2.0
220,851 - -0.9
220,851 - -0.4
220,851 - -1.2
220,851 - +0.2
220,851 - -0.7
220,851 - -0.0
220,851 - -1.0
220,851 - -0.5
220,851 - -1.2
220,851 - +0.3
220,851 - +0.1
220,851 - -1.0
220,851 - -0.3
220,851 - -0.0
220,902 + +1.2
220,902 + +1.9
220,903 - -1.6
220,903 - +1.4
220,903 - -0.4
220,978 + -0.1
220,978 + -1.2
220,979 - +1.7
220,979 - -2.2
221,494 + LRK53_RS00880 0.44 +0.2
221,494 + LRK53_RS00880 0.44 +0.2
221,494 + LRK53_RS00880 0.44 -0.3
221,494 + LRK53_RS00880 0.44 -0.9
221,494 + LRK53_RS00880 0.44 -2.1
221,494 + LRK53_RS00880 0.44 -0.6
221,495 - LRK53_RS00880 0.44 -0.5
221,495 - LRK53_RS00880 0.44 -0.4
221,495 - LRK53_RS00880 0.44 +0.3
221,495 - LRK53_RS00880 0.44 -1.4
221,495 - LRK53_RS00880 0.44 -0.8
221,495 - LRK53_RS00880 0.44 -1.4
221,497 - LRK53_RS00880 0.44 -1.5
221,497 - LRK53_RS00880 0.44 -0.2
221,497 - LRK53_RS00880 0.44 +1.2
221,530 + LRK53_RS00880 0.46 -1.7
221,530 + LRK53_RS00880 0.46 +0.6
221,530 + LRK53_RS00880 0.46 +1.0
221,530 + LRK53_RS00880 0.46 -1.3
221,531 - LRK53_RS00880 0.46 -0.5
221,531 - LRK53_RS00880 0.46 +0.6
221,531 - LRK53_RS00880 0.46 +0.8
221,531 - LRK53_RS00880 0.46 +0.9
221,531 - LRK53_RS00880 0.46 -1.0
221,531 - LRK53_RS00880 0.46 -1.4
221,867 - LRK53_RS00880 0.70 -1.9
221,867 - LRK53_RS00880 0.70 -2.7
221,867 - LRK53_RS00880 0.70 +0.1
221,969 - LRK53_RS00880 0.77 +1.5
221,969 - LRK53_RS00880 0.77 -1.7
222,541 + LRK53_RS00885 0.24 -3.1
222,541 + LRK53_RS00885 0.24 +1.4
222,541 + LRK53_RS00885 0.24 -4.1
222,541 + LRK53_RS00885 0.24 -1.2
222,542 - LRK53_RS00885 0.24 -1.9
222,542 - LRK53_RS00885 0.24 -1.5
222,542 - LRK53_RS00885 0.24 -0.5
222,542 - LRK53_RS00885 0.24 -1.1
222,542 - LRK53_RS00885 0.24 -0.3
222,542 - LRK53_RS00885 0.24 -0.2
222,542 - LRK53_RS00885 0.24 -1.1
222,542 - LRK53_RS00885 0.24 +1.8
222,597 + LRK53_RS00885 0.29 -0.2
222,598 - LRK53_RS00885 0.29 -1.9
222,957 + LRK53_RS00885 0.63 -0.3
222,957 + LRK53_RS00885 0.63 -1.9
222,957 + LRK53_RS00885 0.63 +1.8
222,957 + LRK53_RS00885 0.63 -0.3
222,957 + LRK53_RS00885 0.63 -2.1
222,957 + LRK53_RS00885 0.63 -4.2
222,958 - LRK53_RS00885 0.64 -0.2
222,958 - LRK53_RS00885 0.64 -0.3
222,958 - LRK53_RS00885 0.64 -1.6
222,958 - LRK53_RS00885 0.64 -1.1
223,170 + LRK53_RS00885 0.84 -1.7
223,170 + LRK53_RS00885 0.84 -0.2
223,171 - LRK53_RS00885 0.84 -0.3

Or see this region's nucleotide sequence