Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00870 and LRK53_RS00875 are separated by 159 nucleotides LRK53_RS00875 and LRK53_RS00880 are separated by 50 nucleotides
LRK53_RS00870: LRK53_RS00870 - alpha-2-macroglobulin family protein, at 213,275 to 218,278
_RS00870
LRK53_RS00875: LRK53_RS00875 - penicillin-binding protein 1C, at 218,438 to 220,825
_RS00875
LRK53_RS00880: LRK53_RS00880 - TolC family protein, at 220,876 to 222,294
_RS00880
Position (kb) 218
219
220
221 Strain fitness (log2 ratio) -2
-1
0
1
2 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.445 kb on + strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.446 kb on - strand, within LRK53_RS00870 at 217.466 kb on + strand, within LRK53_RS00870 at 217.559 kb on + strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 217.560 kb on - strand, within LRK53_RS00870 at 218.150 kb on + strand at 218.150 kb on + strand at 218.150 kb on + strand at 218.151 kb on - strand at 218.151 kb on - strand at 218.151 kb on - strand at 218.151 kb on - strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.180 kb on + strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.181 kb on - strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.213 kb on + strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.214 kb on - strand at 218.339 kb on + strand at 218.339 kb on + strand at 218.339 kb on + strand at 218.340 kb on - strand at 218.340 kb on - strand at 218.340 kb on - strand at 218.699 kb on + strand, within LRK53_RS00875 at 218.699 kb on + strand, within LRK53_RS00875 at 218.699 kb on + strand, within LRK53_RS00875 at 218.699 kb on + strand, within LRK53_RS00875 at 218.699 kb on + strand, within LRK53_RS00875 at 218.700 kb on - strand, within LRK53_RS00875 at 218.720 kb on + strand, within LRK53_RS00875 at 218.720 kb on + strand, within LRK53_RS00875 at 218.720 kb on + strand, within LRK53_RS00875 at 218.721 kb on - strand, within LRK53_RS00875 at 218.721 kb on - strand, within LRK53_RS00875 at 218.721 kb on - strand, within LRK53_RS00875 at 218.721 kb on - strand, within LRK53_RS00875 at 218.738 kb on + strand, within LRK53_RS00875 at 218.739 kb on - strand, within LRK53_RS00875 at 218.762 kb on + strand, within LRK53_RS00875 at 218.951 kb on + strand, within LRK53_RS00875 at 218.952 kb on - strand, within LRK53_RS00875 at 218.952 kb on - strand, within LRK53_RS00875 at 218.952 kb on - strand, within LRK53_RS00875 at 218.952 kb on - strand, within LRK53_RS00875 at 219.011 kb on + strand, within LRK53_RS00875 at 219.012 kb on - strand, within LRK53_RS00875 at 219.012 kb on - strand, within LRK53_RS00875 at 219.012 kb on - strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.347 kb on + strand, within LRK53_RS00875 at 219.348 kb on - strand, within LRK53_RS00875 at 219.348 kb on - strand, within LRK53_RS00875 at 219.370 kb on + strand, within LRK53_RS00875 at 219.370 kb on + strand, within LRK53_RS00875 at 219.370 kb on + strand, within LRK53_RS00875 at 219.370 kb on + strand, within LRK53_RS00875 at 219.371 kb on - strand, within LRK53_RS00875 at 219.371 kb on - strand, within LRK53_RS00875 at 219.371 kb on - strand, within LRK53_RS00875 at 219.422 kb on + strand, within LRK53_RS00875 at 219.423 kb on - strand, within LRK53_RS00875 at 219.423 kb on - strand, within LRK53_RS00875 at 219.423 kb on - strand, within LRK53_RS00875 at 219.440 kb on + strand, within LRK53_RS00875 at 219.440 kb on + strand, within LRK53_RS00875 at 219.440 kb on + strand, within LRK53_RS00875 at 219.464 kb on + strand, within LRK53_RS00875 at 219.465 kb on - strand, within LRK53_RS00875 at 219.521 kb on + strand, within LRK53_RS00875 at 219.521 kb on + strand, within LRK53_RS00875 at 219.596 kb on + strand, within LRK53_RS00875 at 219.597 kb on - strand, within LRK53_RS00875 at 219.597 kb on - strand, within LRK53_RS00875 at 219.597 kb on - strand, within LRK53_RS00875 at 219.830 kb on + strand, within LRK53_RS00875 at 219.831 kb on - strand, within LRK53_RS00875 at 220.034 kb on + strand, within LRK53_RS00875 at 220.035 kb on - strand, within LRK53_RS00875 at 220.035 kb on - strand, within LRK53_RS00875 at 220.035 kb on - strand, within LRK53_RS00875 at 220.130 kb on + strand, within LRK53_RS00875 at 220.131 kb on - strand, within LRK53_RS00875 at 220.549 kb on - strand, within LRK53_RS00875 at 220.751 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.850 kb on + strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.851 kb on - strand at 220.902 kb on + strand at 220.902 kb on + strand at 220.903 kb on - strand at 220.903 kb on - strand at 220.903 kb on - strand at 220.978 kb on + strand at 220.978 kb on + strand at 220.979 kb on - strand at 220.979 kb on - strand at 221.494 kb on + strand, within LRK53_RS00880 at 221.494 kb on + strand, within LRK53_RS00880 at 221.494 kb on + strand, within LRK53_RS00880 at 221.494 kb on + strand, within LRK53_RS00880 at 221.494 kb on + strand, within LRK53_RS00880 at 221.494 kb on + strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.495 kb on - strand, within LRK53_RS00880 at 221.497 kb on - strand, within LRK53_RS00880 at 221.497 kb on - strand, within LRK53_RS00880 at 221.497 kb on - strand, within LRK53_RS00880 at 221.530 kb on + strand, within LRK53_RS00880 at 221.530 kb on + strand, within LRK53_RS00880 at 221.530 kb on + strand, within LRK53_RS00880 at 221.530 kb on + strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880 at 221.531 kb on - strand, within LRK53_RS00880
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 217,445 + LRK53_RS00870 0.83 -2.3 217,445 + LRK53_RS00870 0.83 -1.5 217,445 + LRK53_RS00870 0.83 -1.4 217,445 + LRK53_RS00870 0.83 -2.0 217,445 + LRK53_RS00870 0.83 -0.0 217,445 + LRK53_RS00870 0.83 -1.2 217,445 + LRK53_RS00870 0.83 -0.0 217,445 + LRK53_RS00870 0.83 -0.3 217,446 - LRK53_RS00870 0.83 -0.4 217,446 - LRK53_RS00870 0.83 -0.8 217,446 - LRK53_RS00870 0.83 -1.7 217,446 - LRK53_RS00870 0.83 -1.2 217,446 - LRK53_RS00870 0.83 -0.4 217,446 - LRK53_RS00870 0.83 -2.4 217,446 - LRK53_RS00870 0.83 +1.4 217,466 + LRK53_RS00870 0.84 -1.3 217,559 + LRK53_RS00870 0.86 -0.5 217,560 - LRK53_RS00870 0.86 -1.4 217,560 - LRK53_RS00870 0.86 -0.0 217,560 - LRK53_RS00870 0.86 +0.5 217,560 - LRK53_RS00870 0.86 -0.3 217,560 - LRK53_RS00870 0.86 +1.8 217,560 - LRK53_RS00870 0.86 -1.2 218,150 + -1.9 218,150 + -0.8 218,150 + +0.2 218,151 - +0.4 218,151 - -1.9 218,151 - -0.1 218,151 - -1.1 218,180 + -0.8 218,180 + +1.4 218,180 + -1.4 218,180 + -0.6 218,180 + +0.2 218,180 + +1.8 218,180 + -1.7 218,180 + -0.8 218,181 - -0.6 218,181 - +0.1 218,181 - -0.9 218,181 - -0.5 218,181 - -1.1 218,181 - -1.0 218,181 - -1.4 218,181 - -1.1 218,181 - +0.4 218,181 - -0.5 218,213 + +0.4 218,213 + -1.0 218,213 + -1.6 218,213 + -0.1 218,213 + +0.2 218,213 + -1.7 218,213 + -1.5 218,214 - -0.9 218,214 - +0.7 218,214 - +0.4 218,214 - -1.5 218,214 - -0.1 218,214 - -0.4 218,214 - -0.8 218,214 - -1.3 218,214 - -1.5 218,339 + -0.0 218,339 + +0.6 218,339 + +0.5 218,340 - -0.3 218,340 - +0.7 218,340 - -0.2 218,699 + LRK53_RS00875 0.11 -1.4 218,699 + LRK53_RS00875 0.11 +0.4 218,699 + LRK53_RS00875 0.11 -0.4 218,699 + LRK53_RS00875 0.11 -0.7 218,699 + LRK53_RS00875 0.11 -1.1 218,700 - LRK53_RS00875 0.11 -1.8 218,720 + LRK53_RS00875 0.12 +2.6 218,720 + LRK53_RS00875 0.12 -1.4 218,720 + LRK53_RS00875 0.12 +1.9 218,721 - LRK53_RS00875 0.12 -0.8 218,721 - LRK53_RS00875 0.12 -1.4 218,721 - LRK53_RS00875 0.12 -0.8 218,721 - LRK53_RS00875 0.12 -0.0 218,738 + LRK53_RS00875 0.13 -1.0 218,739 - LRK53_RS00875 0.13 +0.8 218,762 + LRK53_RS00875 0.14 +0.2 218,951 + LRK53_RS00875 0.21 +0.6 218,952 - LRK53_RS00875 0.22 -1.1 218,952 - LRK53_RS00875 0.22 +0.2 218,952 - LRK53_RS00875 0.22 +0.6 218,952 - LRK53_RS00875 0.22 -1.2 219,011 + LRK53_RS00875 0.24 -2.1 219,012 - LRK53_RS00875 0.24 -1.9 219,012 - LRK53_RS00875 0.24 -0.6 219,012 - LRK53_RS00875 0.24 -0.9 219,347 + LRK53_RS00875 0.38 -1.6 219,347 + LRK53_RS00875 0.38 -0.9 219,347 + LRK53_RS00875 0.38 +0.4 219,347 + LRK53_RS00875 0.38 +2.2 219,347 + LRK53_RS00875 0.38 -1.6 219,347 + LRK53_RS00875 0.38 +0.7 219,347 + LRK53_RS00875 0.38 -0.2 219,347 + LRK53_RS00875 0.38 +1.4 219,348 - LRK53_RS00875 0.38 -0.5 219,348 - LRK53_RS00875 0.38 -0.2 219,370 + LRK53_RS00875 0.39 +1.4 219,370 + LRK53_RS00875 0.39 -0.5 219,370 + LRK53_RS00875 0.39 -1.6 219,370 + LRK53_RS00875 0.39 -0.6 219,371 - LRK53_RS00875 0.39 +1.3 219,371 - LRK53_RS00875 0.39 +0.2 219,371 - LRK53_RS00875 0.39 -1.7 219,422 + LRK53_RS00875 0.41 +0.4 219,423 - LRK53_RS00875 0.41 -0.9 219,423 - LRK53_RS00875 0.41 -1.5 219,423 - LRK53_RS00875 0.41 +0.2 219,440 + LRK53_RS00875 0.42 -1.2 219,440 + LRK53_RS00875 0.42 -0.0 219,440 + LRK53_RS00875 0.42 +0.9 219,464 + LRK53_RS00875 0.43 -0.8 219,465 - LRK53_RS00875 0.43 +0.2 219,521 + LRK53_RS00875 0.45 -1.2 219,521 + LRK53_RS00875 0.45 -0.6 219,596 + LRK53_RS00875 0.48 -1.6 219,597 - LRK53_RS00875 0.49 -1.6 219,597 - LRK53_RS00875 0.49 +0.2 219,597 - LRK53_RS00875 0.49 +0.7 219,830 + LRK53_RS00875 0.58 -0.4 219,831 - LRK53_RS00875 0.58 -2.2 220,034 + LRK53_RS00875 0.67 -1.0 220,035 - LRK53_RS00875 0.67 -0.8 220,035 - LRK53_RS00875 0.67 -0.5 220,035 - LRK53_RS00875 0.67 -0.4 220,130 + LRK53_RS00875 0.71 -1.5 220,131 - LRK53_RS00875 0.71 -0.8 220,549 - LRK53_RS00875 0.88 -1.0 220,751 + +0.7 220,850 + +0.4 220,850 + +0.1 220,850 + -1.5 220,850 + -1.8 220,850 + -0.7 220,850 + -1.0 220,850 + +0.2 220,850 + -2.0 220,850 + -0.0 220,850 + -0.3 220,850 + -1.7 220,850 + -2.0 220,851 - -0.9 220,851 - -0.4 220,851 - -1.2 220,851 - +0.2 220,851 - -0.7 220,851 - -0.0 220,851 - -1.0 220,851 - -0.5 220,851 - -1.2 220,851 - +0.3 220,851 - +0.1 220,851 - -1.0 220,851 - +0.6 220,851 - -0.3 220,851 - -0.0 220,902 + +1.2 220,902 + +1.9 220,903 - -1.6 220,903 - +1.4 220,903 - -0.4 220,978 + -0.1 220,978 + -1.2 220,979 - +1.7 220,979 - -2.2 221,494 + LRK53_RS00880 0.44 +0.2 221,494 + LRK53_RS00880 0.44 +0.2 221,494 + LRK53_RS00880 0.44 -0.3 221,494 + LRK53_RS00880 0.44 -0.9 221,494 + LRK53_RS00880 0.44 -2.1 221,494 + LRK53_RS00880 0.44 -0.6 221,495 - LRK53_RS00880 0.44 -0.5 221,495 - LRK53_RS00880 0.44 +0.2 221,495 - LRK53_RS00880 0.44 -0.4 221,495 - LRK53_RS00880 0.44 +0.3 221,495 - LRK53_RS00880 0.44 -1.4 221,495 - LRK53_RS00880 0.44 -0.8 221,495 - LRK53_RS00880 0.44 +0.4 221,495 - LRK53_RS00880 0.44 -1.4 221,497 - LRK53_RS00880 0.44 -1.5 221,497 - LRK53_RS00880 0.44 -0.2 221,497 - LRK53_RS00880 0.44 +1.2 221,530 + LRK53_RS00880 0.46 -1.7 221,530 + LRK53_RS00880 0.46 +0.6 221,530 + LRK53_RS00880 0.46 +1.0 221,530 + LRK53_RS00880 0.46 -1.3 221,531 - LRK53_RS00880 0.46 -0.5 221,531 - LRK53_RS00880 0.46 +0.6 221,531 - LRK53_RS00880 0.46 +0.8 221,531 - LRK53_RS00880 0.46 +0.9 221,531 - LRK53_RS00880 0.46 -1.0 221,531 - LRK53_RS00880 0.46 -1.4
Or see this region's nucleotide sequence