Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44395

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44390 and QEN71_RS44395 overlap by 4 nucleotidesQEN71_RS44395 and QEN71_RS44400 are separated by 533 nucleotides QEN71_RS44390: QEN71_RS44390 - site-specific integrase, at 351,305 to 352,315 _RS44390 QEN71_RS44395: QEN71_RS44395 - tyrosine-type recombinase/integrase, at 352,312 to 353,244 _RS44395 QEN71_RS44400: QEN71_RS44400 - IS110 family transposase, at 353,778 to 354,908 _RS44400 Position (kb) 352 353 354Strain fitness (log2 ratio) -2 -1 0 1at 351.429 kb on + strand, within QEN71_RS44390at 351.429 kb on + strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.542 kb on + strand, within QEN71_RS44390at 351.588 kb on + strand, within QEN71_RS44390at 351.588 kb on + strand, within QEN71_RS44390at 351.588 kb on + strand, within QEN71_RS44390at 351.589 kb on - strand, within QEN71_RS44390at 351.746 kb on + strand, within QEN71_RS44390at 351.747 kb on - strand, within QEN71_RS44390at 351.788 kb on - strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.850 kb on - strand, within QEN71_RS44390at 351.854 kb on + strand, within QEN71_RS44390at 351.854 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.898 kb on - strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 352.016 kb on + strand, within QEN71_RS44390at 352.028 kb on + strand, within QEN71_RS44390at 352.029 kb on - strand, within QEN71_RS44390at 352.134 kb on - strand, within QEN71_RS44390at 352.320 kb on + strandat 352.320 kb on + strandat 352.320 kb on + strandat 352.320 kb on + strandat 352.321 kb on - strandat 352.321 kb on - strandat 352.321 kb on - strandat 352.321 kb on - strandat 352.359 kb on + strandat 352.360 kb on - strandat 352.381 kb on + strandat 352.382 kb on - strandat 352.403 kb on + strandat 352.404 kb on - strandat 352.439 kb on + strand, within QEN71_RS44395at 352.439 kb on + strand, within QEN71_RS44395at 352.440 kb on - strand, within QEN71_RS44395at 352.605 kb on - strand, within QEN71_RS44395at 352.652 kb on + strand, within QEN71_RS44395at 352.652 kb on + strand, within QEN71_RS44395at 352.688 kb on + strand, within QEN71_RS44395at 352.688 kb on + strand, within QEN71_RS44395at 352.689 kb on - strand, within QEN71_RS44395at 352.706 kb on - strand, within QEN71_RS44395at 352.838 kb on + strand, within QEN71_RS44395at 352.838 kb on + strand, within QEN71_RS44395at 352.838 kb on + strand, within QEN71_RS44395at 352.974 kb on - strand, within QEN71_RS44395at 352.979 kb on - strand, within QEN71_RS44395at 353.059 kb on - strand, within QEN71_RS44395at 353.059 kb on - strand, within QEN71_RS44395at 353.066 kb on + strand, within QEN71_RS44395at 353.067 kb on - strand, within QEN71_RS44395at 353.287 kb on - strandat 353.287 kb on - strandat 353.330 kb on + strandat 353.331 kb on - strandat 353.354 kb on + strandat 353.354 kb on + strandat 353.512 kb on + strandat 353.528 kb on - strandat 353.528 kb on - strandat 353.617 kb on - strandat 353.641 kb on - strandat 353.641 kb on - strandat 353.657 kb on - strandat 353.790 kb on - strandat 353.799 kb on + strandat 353.799 kb on + strandat 353.800 kb on - strandat 353.800 kb on - strandat 353.800 kb on - strandat 353.820 kb on - strandat 353.841 kb on + strandat 353.842 kb on - strandat 353.888 kb on + strandat 353.889 kb on - strandat 353.944 kb on + strand, within QEN71_RS44400at 354.223 kb on + strand, within QEN71_RS44400

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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351,429 + QEN71_RS44390 0.12 +0.5
351,429 + QEN71_RS44390 0.12 +0.2
351,430 - QEN71_RS44390 0.12 -1.3
351,430 - QEN71_RS44390 0.12 -0.1
351,430 - QEN71_RS44390 0.12 -0.9
351,430 - QEN71_RS44390 0.12 +0.9
351,430 - QEN71_RS44390 0.12 +1.5
351,542 + QEN71_RS44390 0.23 +0.7
351,588 + QEN71_RS44390 0.28 +0.5
351,588 + QEN71_RS44390 0.28 +0.1
351,588 + QEN71_RS44390 0.28 -1.9
351,589 - QEN71_RS44390 0.28 +0.2
351,746 + QEN71_RS44390 0.44 -1.0
351,747 - QEN71_RS44390 0.44 +0.3
351,788 - QEN71_RS44390 0.48 -0.3
351,849 + QEN71_RS44390 0.54 -0.5
351,849 + QEN71_RS44390 0.54 -0.9
351,849 + QEN71_RS44390 0.54 -0.6
351,849 + QEN71_RS44390 0.54 -0.7
351,849 + QEN71_RS44390 0.54 +0.1
351,850 - QEN71_RS44390 0.54 -0.5
351,854 + QEN71_RS44390 0.54 -0.1
351,854 + QEN71_RS44390 0.54 -0.5
351,892 + QEN71_RS44390 0.58 -0.4
351,892 + QEN71_RS44390 0.58 +0.9
351,892 + QEN71_RS44390 0.58 -1.7
351,892 + QEN71_RS44390 0.58 +0.1
351,896 + QEN71_RS44390 0.58 -1.1
351,896 + QEN71_RS44390 0.58 -1.1
351,896 + QEN71_RS44390 0.58 -0.4
351,896 + QEN71_RS44390 0.58 +0.3
351,897 - QEN71_RS44390 0.59 +0.2
351,897 - QEN71_RS44390 0.59 +1.0
351,897 - QEN71_RS44390 0.59 -0.0
351,897 - QEN71_RS44390 0.59 +1.0
351,897 - QEN71_RS44390 0.59 -0.7
351,897 - QEN71_RS44390 0.59 -0.9
351,898 - QEN71_RS44390 0.59 -1.3
351,927 + QEN71_RS44390 0.62 +0.6
351,927 + QEN71_RS44390 0.62 -0.0
351,927 + QEN71_RS44390 0.62 +0.2
351,927 + QEN71_RS44390 0.62 -0.0
352,016 + QEN71_RS44390 0.70 +0.1
352,028 + QEN71_RS44390 0.72 +0.0
352,029 - QEN71_RS44390 0.72 -0.3
352,134 - QEN71_RS44390 0.82 -0.7
352,320 + +1.2
352,320 + -0.1
352,320 + -2.1
352,320 + +1.4
352,321 - +0.6
352,321 - +1.0
352,321 - +0.3
352,321 - +1.0
352,359 + -0.5
352,360 - -1.1
352,381 + -0.1
352,382 - -0.1
352,403 + -0.4
352,404 - -0.1
352,439 + QEN71_RS44395 0.14 -0.2
352,439 + QEN71_RS44395 0.14 -0.5
352,440 - QEN71_RS44395 0.14 +0.5
352,605 - QEN71_RS44395 0.31 +0.3
352,652 + QEN71_RS44395 0.36 +0.4
352,652 + QEN71_RS44395 0.36 -1.6
352,688 + QEN71_RS44395 0.40 -1.1
352,688 + QEN71_RS44395 0.40 +1.1
352,689 - QEN71_RS44395 0.40 +0.3
352,706 - QEN71_RS44395 0.42 -0.3
352,838 + QEN71_RS44395 0.56 -1.3
352,838 + QEN71_RS44395 0.56 -0.5
352,838 + QEN71_RS44395 0.56 -1.0
352,974 - QEN71_RS44395 0.71 +0.7
352,979 - QEN71_RS44395 0.71 +0.5
353,059 - QEN71_RS44395 0.80 -0.5
353,059 - QEN71_RS44395 0.80 -0.1
353,066 + QEN71_RS44395 0.81 +1.2
353,067 - QEN71_RS44395 0.81 -0.9
353,287 - -0.9
353,287 - +1.3
353,330 + -0.8
353,331 - -0.6
353,354 + -1.9
353,354 + -0.9
353,512 + -0.1
353,528 - +0.9
353,528 - -0.7
353,617 - -1.6
353,641 - -1.1
353,641 - +0.3
353,657 - -0.1
353,790 - -0.1
353,799 + +1.0
353,799 + +0.5
353,800 - -0.7
353,800 - -0.4
353,800 - -0.6
353,820 - -0.1
353,841 + +0.0
353,842 - +0.1
353,888 + +0.5
353,889 - -0.1
353,944 + QEN71_RS44400 0.15 +0.4
354,223 + QEN71_RS44400 0.39 +0.1

Or see this region's nucleotide sequence