Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36060

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36055 and QEN71_RS36060 overlap by 4 nucleotidesQEN71_RS36060 and QEN71_RS36065 are separated by 58 nucleotides QEN71_RS36055: QEN71_RS36055 - ABC transporter permease, at 1,473,055 to 1,474,056 _RS36055 QEN71_RS36060: QEN71_RS36060 - sugar ABC transporter ATP-binding protein, at 1,474,053 to 1,475,615 _RS36060 QEN71_RS36065: QEN71_RS36065 - sugar ABC transporter substrate-binding protein, at 1,475,674 to 1,476,783 _RS36065 Position (kb) 1474 1475 1476Strain fitness (log2 ratio) -2 -1 0 1at 1473.187 kb on + strand, within QEN71_RS36055at 1473.187 kb on + strand, within QEN71_RS36055at 1473.187 kb on + strand, within QEN71_RS36055at 1473.195 kb on + strand, within QEN71_RS36055at 1473.662 kb on - strand, within QEN71_RS36055at 1473.889 kb on + strand, within QEN71_RS36055at 1473.889 kb on + strand, within QEN71_RS36055at 1473.890 kb on - strand, within QEN71_RS36055at 1473.890 kb on - strand, within QEN71_RS36055at 1474.142 kb on - strandat 1474.142 kb on - strandat 1474.236 kb on - strand, within QEN71_RS36060at 1474.243 kb on + strand, within QEN71_RS36060at 1474.244 kb on - strand, within QEN71_RS36060at 1474.811 kb on - strand, within QEN71_RS36060at 1474.811 kb on - strand, within QEN71_RS36060at 1474.959 kb on - strand, within QEN71_RS36060at 1475.293 kb on + strand, within QEN71_RS36060at 1475.293 kb on + strand, within QEN71_RS36060at 1475.294 kb on - strand, within QEN71_RS36060at 1475.765 kb on + strandat 1475.765 kb on + strandat 1476.156 kb on + strand, within QEN71_RS36065at 1476.340 kb on - strand, within QEN71_RS36065

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,473,187 + QEN71_RS36055 0.13 -0.1
1,473,187 + QEN71_RS36055 0.13 +0.6
1,473,187 + QEN71_RS36055 0.13 +0.5
1,473,195 + QEN71_RS36055 0.14 -0.1
1,473,662 - QEN71_RS36055 0.61 -1.5
1,473,889 + QEN71_RS36055 0.83 +0.3
1,473,889 + QEN71_RS36055 0.83 -0.5
1,473,890 - QEN71_RS36055 0.83 +0.2
1,473,890 - QEN71_RS36055 0.83 +0.9
1,474,142 - -0.6
1,474,142 - -0.2
1,474,236 - QEN71_RS36060 0.12 -0.2
1,474,243 + QEN71_RS36060 0.12 +1.0
1,474,244 - QEN71_RS36060 0.12 +0.2
1,474,811 - QEN71_RS36060 0.48 -2.0
1,474,811 - QEN71_RS36060 0.48 +0.5
1,474,959 - QEN71_RS36060 0.58 +0.2
1,475,293 + QEN71_RS36060 0.79 +0.6
1,475,293 + QEN71_RS36060 0.79 -0.3
1,475,294 - QEN71_RS36060 0.79 +0.8
1,475,765 + -0.2
1,475,765 + +0.6
1,476,156 + QEN71_RS36065 0.43 -0.4
1,476,340 - QEN71_RS36065 0.60 -2.1

Or see this region's nucleotide sequence