Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS36055 and QEN71_RS36060 overlap by 4 nucleotides QEN71_RS36060 and QEN71_RS36065 are separated by 58 nucleotides
QEN71_RS36055: QEN71_RS36055 - ABC transporter permease, at 1,473,055 to 1,474,056
_RS36055
QEN71_RS36060: QEN71_RS36060 - sugar ABC transporter ATP-binding protein, at 1,474,053 to 1,475,615
_RS36060
QEN71_RS36065: QEN71_RS36065 - sugar ABC transporter substrate-binding protein, at 1,475,674 to 1,476,783
_RS36065
Position (kb)
1474
1475
1476 Strain fitness (log2 ratio)
-2
-1
0
1 at 1473.187 kb on + strand, within QEN71_RS36055 at 1473.187 kb on + strand, within QEN71_RS36055 at 1473.187 kb on + strand, within QEN71_RS36055 at 1473.195 kb on + strand, within QEN71_RS36055 at 1473.662 kb on - strand, within QEN71_RS36055 at 1473.889 kb on + strand, within QEN71_RS36055 at 1473.889 kb on + strand, within QEN71_RS36055 at 1473.890 kb on - strand, within QEN71_RS36055 at 1473.890 kb on - strand, within QEN71_RS36055 at 1474.142 kb on - strand at 1474.142 kb on - strand at 1474.236 kb on - strand, within QEN71_RS36060 at 1474.243 kb on + strand, within QEN71_RS36060 at 1474.244 kb on - strand, within QEN71_RS36060 at 1474.811 kb on - strand, within QEN71_RS36060 at 1474.811 kb on - strand, within QEN71_RS36060 at 1474.959 kb on - strand, within QEN71_RS36060 at 1475.293 kb on + strand, within QEN71_RS36060 at 1475.293 kb on + strand, within QEN71_RS36060 at 1475.294 kb on - strand, within QEN71_RS36060 at 1475.765 kb on + strand at 1475.765 kb on + strand at 1476.156 kb on + strand, within QEN71_RS36065 at 1476.340 kb on - strand, within QEN71_RS36065
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 1,473,187 + QEN71_RS36055 0.13 -0.1 1,473,187 + QEN71_RS36055 0.13 +0.6 1,473,187 + QEN71_RS36055 0.13 +0.5 1,473,195 + QEN71_RS36055 0.14 -0.1 1,473,662 - QEN71_RS36055 0.61 -1.5 1,473,889 + QEN71_RS36055 0.83 +0.3 1,473,889 + QEN71_RS36055 0.83 -0.5 1,473,890 - QEN71_RS36055 0.83 +0.2 1,473,890 - QEN71_RS36055 0.83 +0.9 1,474,142 - -0.6 1,474,142 - -0.2 1,474,236 - QEN71_RS36060 0.12 -0.2 1,474,243 + QEN71_RS36060 0.12 +1.0 1,474,244 - QEN71_RS36060 0.12 +0.2 1,474,811 - QEN71_RS36060 0.48 -2.0 1,474,811 - QEN71_RS36060 0.48 +0.5 1,474,959 - QEN71_RS36060 0.58 +0.2 1,475,293 + QEN71_RS36060 0.79 +0.6 1,475,293 + QEN71_RS36060 0.79 -0.3 1,475,294 - QEN71_RS36060 0.79 +0.8 1,475,765 + -0.2 1,475,765 + +0.6 1,476,156 + QEN71_RS36065 0.43 -0.4 1,476,340 - QEN71_RS36065 0.60 -2.1
Or see this region's nucleotide sequence