Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36055

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36050 and QEN71_RS36055 are separated by 19 nucleotidesQEN71_RS36055 and QEN71_RS36060 overlap by 4 nucleotides QEN71_RS36050: QEN71_RS36050 - dihydroxyacetone kinase subunit DhaK, at 1,472,037 to 1,473,035 _RS36050 QEN71_RS36055: QEN71_RS36055 - ABC transporter permease, at 1,473,055 to 1,474,056 _RS36055 QEN71_RS36060: QEN71_RS36060 - sugar ABC transporter ATP-binding protein, at 1,474,053 to 1,475,615 _RS36060 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -2 -1 0 1at 1472.147 kb on - strand, within QEN71_RS36050at 1472.147 kb on - strand, within QEN71_RS36050at 1472.158 kb on + strand, within QEN71_RS36050at 1472.159 kb on - strand, within QEN71_RS36050at 1472.205 kb on - strand, within QEN71_RS36050at 1472.222 kb on - strand, within QEN71_RS36050at 1472.381 kb on + strand, within QEN71_RS36050at 1472.728 kb on + strand, within QEN71_RS36050at 1472.728 kb on + strand, within QEN71_RS36050at 1472.729 kb on - strand, within QEN71_RS36050at 1472.729 kb on - strand, within QEN71_RS36050at 1472.729 kb on - strand, within QEN71_RS36050at 1472.729 kb on - strand, within QEN71_RS36050at 1472.729 kb on - strand, within QEN71_RS36050at 1473.187 kb on + strand, within QEN71_RS36055at 1473.187 kb on + strand, within QEN71_RS36055at 1473.187 kb on + strand, within QEN71_RS36055at 1473.195 kb on + strand, within QEN71_RS36055at 1473.662 kb on - strand, within QEN71_RS36055at 1473.889 kb on + strand, within QEN71_RS36055at 1473.889 kb on + strand, within QEN71_RS36055at 1473.890 kb on - strand, within QEN71_RS36055at 1473.890 kb on - strand, within QEN71_RS36055at 1474.142 kb on - strandat 1474.142 kb on - strandat 1474.236 kb on - strand, within QEN71_RS36060at 1474.243 kb on + strand, within QEN71_RS36060at 1474.244 kb on - strand, within QEN71_RS36060at 1474.811 kb on - strand, within QEN71_RS36060at 1474.811 kb on - strand, within QEN71_RS36060at 1474.959 kb on - strand, within QEN71_RS36060

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,472,147 - QEN71_RS36050 0.11 -0.4
1,472,147 - QEN71_RS36050 0.11 -0.3
1,472,158 + QEN71_RS36050 0.12 -0.6
1,472,159 - QEN71_RS36050 0.12 -0.0
1,472,205 - QEN71_RS36050 0.17 -0.1
1,472,222 - QEN71_RS36050 0.19 +0.7
1,472,381 + QEN71_RS36050 0.34 -0.3
1,472,728 + QEN71_RS36050 0.69 -1.8
1,472,728 + QEN71_RS36050 0.69 +0.1
1,472,729 - QEN71_RS36050 0.69 -0.2
1,472,729 - QEN71_RS36050 0.69 +0.9
1,472,729 - QEN71_RS36050 0.69 +0.1
1,472,729 - QEN71_RS36050 0.69 +0.7
1,472,729 - QEN71_RS36050 0.69 +0.3
1,473,187 + QEN71_RS36055 0.13 -0.1
1,473,187 + QEN71_RS36055 0.13 +0.6
1,473,187 + QEN71_RS36055 0.13 +0.5
1,473,195 + QEN71_RS36055 0.14 -0.1
1,473,662 - QEN71_RS36055 0.61 -1.5
1,473,889 + QEN71_RS36055 0.83 +0.3
1,473,889 + QEN71_RS36055 0.83 -0.5
1,473,890 - QEN71_RS36055 0.83 +0.2
1,473,890 - QEN71_RS36055 0.83 +0.9
1,474,142 - -0.6
1,474,142 - -0.2
1,474,236 - QEN71_RS36060 0.12 -0.2
1,474,243 + QEN71_RS36060 0.12 +1.0
1,474,244 - QEN71_RS36060 0.12 +0.2
1,474,811 - QEN71_RS36060 0.48 -2.0
1,474,811 - QEN71_RS36060 0.48 +0.5
1,474,959 - QEN71_RS36060 0.58 +0.2

Or see this region's nucleotide sequence