Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36025

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36020 and QEN71_RS36025 are separated by 2 nucleotidesQEN71_RS36025 and QEN71_RS36030 are separated by 51 nucleotidesQEN71_RS36030 and QEN71_RS36035 are separated by 55 nucleotides QEN71_RS36020: QEN71_RS36020 - choline dehydrogenase, at 1,465,492 to 1,467,126 _RS36020 QEN71_RS36025: QEN71_RS36025 - cupin domain-containing protein, at 1,467,129 to 1,467,428 _RS36025 QEN71_RS36030: QEN71_RS36030 - glycine betaine ABC transporter substrate-binding protein, at 1,467,480 to 1,468,343 _RS36030 QEN71_RS36035: QEN71_RS36035 - Xaa-Pro peptidase family protein, at 1,468,399 to 1,469,655 _RS36035 Position (kb) 1467 1468Strain fitness (log2 ratio) -2 -1 0 1at 1466.292 kb on + strand, within QEN71_RS36020at 1466.293 kb on - strand, within QEN71_RS36020at 1466.293 kb on - strand, within QEN71_RS36020at 1466.497 kb on - strand, within QEN71_RS36020at 1466.936 kb on + strand, within QEN71_RS36020at 1467.101 kb on + strandat 1467.322 kb on + strand, within QEN71_RS36025at 1467.322 kb on + strand, within QEN71_RS36025at 1467.322 kb on + strand, within QEN71_RS36025at 1467.323 kb on - strand, within QEN71_RS36025at 1467.845 kb on - strand, within QEN71_RS36030at 1467.988 kb on + strand, within QEN71_RS36030at 1468.139 kb on - strand, within QEN71_RS36030

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,466,292 + QEN71_RS36020 0.49 +0.2
1,466,293 - QEN71_RS36020 0.49 +0.1
1,466,293 - QEN71_RS36020 0.49 -2.3
1,466,497 - QEN71_RS36020 0.61 -1.1
1,466,936 + QEN71_RS36020 0.88 +0.2
1,467,101 + -0.1
1,467,322 + QEN71_RS36025 0.64 -0.6
1,467,322 + QEN71_RS36025 0.64 -0.0
1,467,322 + QEN71_RS36025 0.64 -1.6
1,467,323 - QEN71_RS36025 0.65 -0.6
1,467,845 - QEN71_RS36030 0.42 -0.1
1,467,988 + QEN71_RS36030 0.59 -0.8
1,468,139 - QEN71_RS36030 0.76 +0.6

Or see this region's nucleotide sequence