Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS36020 and QEN71_RS36025 are separated by 2 nucleotides QEN71_RS36025 and QEN71_RS36030 are separated by 51 nucleotides QEN71_RS36030 and QEN71_RS36035 are separated by 55 nucleotides
QEN71_RS36020: QEN71_RS36020 - choline dehydrogenase, at 1,465,492 to 1,467,126
_RS36020
QEN71_RS36025: QEN71_RS36025 - cupin domain-containing protein, at 1,467,129 to 1,467,428
_RS36025
QEN71_RS36030: QEN71_RS36030 - glycine betaine ABC transporter substrate-binding protein, at 1,467,480 to 1,468,343
_RS36030
QEN71_RS36035: QEN71_RS36035 - Xaa-Pro peptidase family protein, at 1,468,399 to 1,469,655
_RS36035
Position (kb)
1467
1468 Strain fitness (log2 ratio)
-2
-1
0
1 at 1466.292 kb on + strand, within QEN71_RS36020 at 1466.293 kb on - strand, within QEN71_RS36020 at 1466.293 kb on - strand, within QEN71_RS36020 at 1466.497 kb on - strand, within QEN71_RS36020 at 1466.936 kb on + strand, within QEN71_RS36020 at 1467.101 kb on + strand at 1467.322 kb on + strand, within QEN71_RS36025 at 1467.322 kb on + strand, within QEN71_RS36025 at 1467.322 kb on + strand, within QEN71_RS36025 at 1467.323 kb on - strand, within QEN71_RS36025 at 1467.845 kb on - strand, within QEN71_RS36030 at 1467.988 kb on + strand, within QEN71_RS36030 at 1468.139 kb on - strand, within QEN71_RS36030
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 1,466,292 + QEN71_RS36020 0.49 +0.2 1,466,293 - QEN71_RS36020 0.49 +0.1 1,466,293 - QEN71_RS36020 0.49 -2.3 1,466,497 - QEN71_RS36020 0.61 -1.1 1,466,936 + QEN71_RS36020 0.88 +0.2 1,467,101 + -0.1 1,467,322 + QEN71_RS36025 0.64 -0.6 1,467,322 + QEN71_RS36025 0.64 -0.0 1,467,322 + QEN71_RS36025 0.64 -1.6 1,467,323 - QEN71_RS36025 0.65 -0.6 1,467,845 - QEN71_RS36030 0.42 -0.1 1,467,988 + QEN71_RS36030 0.59 -0.8 1,468,139 - QEN71_RS36030 0.76 +0.6
Or see this region's nucleotide sequence