Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35785

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35780 and QEN71_RS35785 are separated by 10 nucleotidesQEN71_RS35785 and QEN71_RS35790 are separated by 251 nucleotides QEN71_RS35780: QEN71_RS35780 - aldehyde dehydrogenase family protein, at 1,409,488 to 1,410,972 _RS35780 QEN71_RS35785: QEN71_RS35785 - sugar ABC transporter ATP-binding protein, at 1,410,983 to 1,412,476 _RS35785 QEN71_RS35790: QEN71_RS35790 - LacI family DNA-binding transcriptional regulator, at 1,412,728 to 1,413,822 _RS35790 Position (kb) 1410 1411 1412 1413Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1410.145 kb on - strand, within QEN71_RS35780at 1410.145 kb on - strand, within QEN71_RS35780at 1410.145 kb on - strand, within QEN71_RS35780at 1410.224 kb on - strand, within QEN71_RS35780at 1410.367 kb on + strand, within QEN71_RS35780at 1410.367 kb on + strand, within QEN71_RS35780at 1410.368 kb on - strand, within QEN71_RS35780at 1410.594 kb on - strand, within QEN71_RS35780at 1410.960 kb on - strandat 1410.984 kb on + strandat 1410.984 kb on + strandat 1410.984 kb on + strandat 1411.067 kb on + strandat 1411.068 kb on - strandat 1411.068 kb on - strandat 1411.068 kb on - strandat 1411.087 kb on + strandat 1411.087 kb on + strandat 1411.149 kb on - strand, within QEN71_RS35785at 1411.167 kb on + strand, within QEN71_RS35785at 1411.167 kb on + strand, within QEN71_RS35785at 1411.168 kb on - strand, within QEN71_RS35785at 1411.168 kb on - strand, within QEN71_RS35785at 1411.168 kb on - strand, within QEN71_RS35785at 1411.168 kb on - strand, within QEN71_RS35785at 1411.321 kb on + strand, within QEN71_RS35785at 1411.334 kb on + strand, within QEN71_RS35785at 1411.334 kb on + strand, within QEN71_RS35785at 1411.334 kb on + strand, within QEN71_RS35785at 1411.334 kb on + strand, within QEN71_RS35785at 1411.334 kb on + strand, within QEN71_RS35785at 1411.334 kb on + strand, within QEN71_RS35785at 1411.335 kb on - strand, within QEN71_RS35785at 1411.335 kb on - strand, within QEN71_RS35785at 1411.335 kb on - strand, within QEN71_RS35785at 1411.335 kb on - strand, within QEN71_RS35785at 1411.339 kb on - strand, within QEN71_RS35785at 1411.488 kb on - strand, within QEN71_RS35785at 1411.738 kb on + strand, within QEN71_RS35785at 1411.738 kb on + strand, within QEN71_RS35785at 1411.739 kb on - strand, within QEN71_RS35785at 1411.798 kb on + strand, within QEN71_RS35785at 1411.808 kb on - strand, within QEN71_RS35785at 1411.884 kb on + strand, within QEN71_RS35785at 1411.884 kb on + strand, within QEN71_RS35785at 1411.884 kb on + strand, within QEN71_RS35785at 1411.918 kb on + strand, within QEN71_RS35785at 1411.918 kb on + strand, within QEN71_RS35785at 1411.918 kb on + strand, within QEN71_RS35785at 1411.919 kb on - strand, within QEN71_RS35785at 1411.919 kb on - strand, within QEN71_RS35785at 1411.930 kb on + strand, within QEN71_RS35785at 1412.175 kb on - strand, within QEN71_RS35785at 1412.220 kb on + strand, within QEN71_RS35785at 1412.221 kb on - strand, within QEN71_RS35785at 1412.221 kb on - strand, within QEN71_RS35785at 1412.221 kb on - strand, within QEN71_RS35785at 1412.314 kb on - strand, within QEN71_RS35785at 1412.314 kb on - strand, within QEN71_RS35785at 1412.314 kb on - strand, within QEN71_RS35785at 1412.314 kb on - strand, within QEN71_RS35785at 1412.521 kb on + strandat 1412.643 kb on + strandat 1412.644 kb on - strandat 1412.762 kb on + strandat 1412.762 kb on + strandat 1412.903 kb on + strand, within QEN71_RS35790at 1412.903 kb on + strand, within QEN71_RS35790at 1412.903 kb on + strand, within QEN71_RS35790at 1412.903 kb on + strand, within QEN71_RS35790at 1412.903 kb on + strand, within QEN71_RS35790at 1412.903 kb on + strand, within QEN71_RS35790at 1412.903 kb on + strand, within QEN71_RS35790at 1412.903 kb on + strand, within QEN71_RS35790at 1412.903 kb on + strand, within QEN71_RS35790at 1412.903 kb on + strand, within QEN71_RS35790at 1412.903 kb on + strand, within QEN71_RS35790at 1413.009 kb on + strand, within QEN71_RS35790at 1413.009 kb on + strand, within QEN71_RS35790at 1413.009 kb on + strand, within QEN71_RS35790at 1413.009 kb on + strand, within QEN71_RS35790at 1413.009 kb on + strand, within QEN71_RS35790at 1413.010 kb on - strand, within QEN71_RS35790at 1413.010 kb on - strand, within QEN71_RS35790at 1413.010 kb on - strand, within QEN71_RS35790at 1413.010 kb on - strand, within QEN71_RS35790at 1413.010 kb on - strand, within QEN71_RS35790at 1413.020 kb on - strand, within QEN71_RS35790at 1413.020 kb on - strand, within QEN71_RS35790at 1413.121 kb on + strand, within QEN71_RS35790at 1413.121 kb on + strand, within QEN71_RS35790at 1413.122 kb on - strand, within QEN71_RS35790at 1413.196 kb on - strand, within QEN71_RS35790at 1413.206 kb on + strand, within QEN71_RS35790at 1413.209 kb on + strand, within QEN71_RS35790at 1413.209 kb on + strand, within QEN71_RS35790at 1413.209 kb on + strand, within QEN71_RS35790at 1413.210 kb on - strand, within QEN71_RS35790at 1413.210 kb on - strand, within QEN71_RS35790at 1413.224 kb on + strand, within QEN71_RS35790at 1413.233 kb on + strand, within QEN71_RS35790at 1413.233 kb on + strand, within QEN71_RS35790at 1413.233 kb on + strand, within QEN71_RS35790at 1413.234 kb on - strand, within QEN71_RS35790at 1413.241 kb on + strand, within QEN71_RS35790at 1413.241 kb on + strand, within QEN71_RS35790at 1413.241 kb on + strand, within QEN71_RS35790at 1413.241 kb on + strand, within QEN71_RS35790at 1413.242 kb on - strand, within QEN71_RS35790at 1413.242 kb on - strand, within QEN71_RS35790at 1413.242 kb on - strand, within QEN71_RS35790at 1413.286 kb on - strand, within QEN71_RS35790at 1413.466 kb on + strand, within QEN71_RS35790at 1413.466 kb on + strand, within QEN71_RS35790at 1413.466 kb on + strand, within QEN71_RS35790at 1413.467 kb on - strand, within QEN71_RS35790

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,410,145 - QEN71_RS35780 0.44 +0.1
1,410,145 - QEN71_RS35780 0.44 +0.7
1,410,145 - QEN71_RS35780 0.44 -0.4
1,410,224 - QEN71_RS35780 0.50 -0.1
1,410,367 + QEN71_RS35780 0.59 +0.3
1,410,367 + QEN71_RS35780 0.59 -0.1
1,410,368 - QEN71_RS35780 0.59 +0.3
1,410,594 - QEN71_RS35780 0.74 -0.4
1,410,960 - +0.5
1,410,984 + -0.8
1,410,984 + -0.4
1,410,984 + -1.0
1,411,067 + -0.6
1,411,068 - -0.4
1,411,068 - +1.0
1,411,068 - -0.3
1,411,087 + +0.4
1,411,087 + +1.0
1,411,149 - QEN71_RS35785 0.11 +0.2
1,411,167 + QEN71_RS35785 0.12 -1.2
1,411,167 + QEN71_RS35785 0.12 -0.2
1,411,168 - QEN71_RS35785 0.12 -0.6
1,411,168 - QEN71_RS35785 0.12 +0.2
1,411,168 - QEN71_RS35785 0.12 -1.5
1,411,168 - QEN71_RS35785 0.12 -0.9
1,411,321 + QEN71_RS35785 0.23 -0.9
1,411,334 + QEN71_RS35785 0.23 +0.5
1,411,334 + QEN71_RS35785 0.23 +1.2
1,411,334 + QEN71_RS35785 0.23 +0.1
1,411,334 + QEN71_RS35785 0.23 -2.9
1,411,334 + QEN71_RS35785 0.23 -0.5
1,411,334 + QEN71_RS35785 0.23 +0.4
1,411,335 - QEN71_RS35785 0.24 +0.2
1,411,335 - QEN71_RS35785 0.24 +0.0
1,411,335 - QEN71_RS35785 0.24 -1.1
1,411,335 - QEN71_RS35785 0.24 +0.6
1,411,339 - QEN71_RS35785 0.24 +0.5
1,411,488 - QEN71_RS35785 0.34 +0.6
1,411,738 + QEN71_RS35785 0.51 +0.0
1,411,738 + QEN71_RS35785 0.51 -1.1
1,411,739 - QEN71_RS35785 0.51 -0.2
1,411,798 + QEN71_RS35785 0.55 -0.6
1,411,808 - QEN71_RS35785 0.55 -0.1
1,411,884 + QEN71_RS35785 0.60 +0.8
1,411,884 + QEN71_RS35785 0.60 -0.3
1,411,884 + QEN71_RS35785 0.60 +0.3
1,411,918 + QEN71_RS35785 0.63 -0.1
1,411,918 + QEN71_RS35785 0.63 +0.4
1,411,918 + QEN71_RS35785 0.63 -0.2
1,411,919 - QEN71_RS35785 0.63 -0.0
1,411,919 - QEN71_RS35785 0.63 +1.2
1,411,930 + QEN71_RS35785 0.63 +0.6
1,412,175 - QEN71_RS35785 0.80 -1.2
1,412,220 + QEN71_RS35785 0.83 +0.5
1,412,221 - QEN71_RS35785 0.83 -1.6
1,412,221 - QEN71_RS35785 0.83 +0.8
1,412,221 - QEN71_RS35785 0.83 +0.8
1,412,314 - QEN71_RS35785 0.89 -0.7
1,412,314 - QEN71_RS35785 0.89 +0.6
1,412,314 - QEN71_RS35785 0.89 -1.0
1,412,314 - QEN71_RS35785 0.89 +0.2
1,412,521 + +0.6
1,412,643 + -0.4
1,412,644 - +1.5
1,412,762 + -1.5
1,412,762 + -1.4
1,412,903 + QEN71_RS35790 0.16 -1.2
1,412,903 + QEN71_RS35790 0.16 -0.5
1,412,903 + QEN71_RS35790 0.16 -1.3
1,412,903 + QEN71_RS35790 0.16 -0.6
1,412,903 + QEN71_RS35790 0.16 -3.3
1,412,903 + QEN71_RS35790 0.16 -0.6
1,412,903 + QEN71_RS35790 0.16 -1.3
1,412,903 + QEN71_RS35790 0.16 -1.9
1,412,903 + QEN71_RS35790 0.16 -0.9
1,412,903 + QEN71_RS35790 0.16 -1.2
1,412,903 + QEN71_RS35790 0.16 +0.2
1,413,009 + QEN71_RS35790 0.26 +0.6
1,413,009 + QEN71_RS35790 0.26 -0.6
1,413,009 + QEN71_RS35790 0.26 -2.4
1,413,009 + QEN71_RS35790 0.26 -3.1
1,413,009 + QEN71_RS35790 0.26 -0.1
1,413,010 - QEN71_RS35790 0.26 -0.4
1,413,010 - QEN71_RS35790 0.26 -3.0
1,413,010 - QEN71_RS35790 0.26 -3.3
1,413,010 - QEN71_RS35790 0.26 -0.1
1,413,010 - QEN71_RS35790 0.26 -2.1
1,413,020 - QEN71_RS35790 0.27 +0.4
1,413,020 - QEN71_RS35790 0.27 -1.2
1,413,121 + QEN71_RS35790 0.36 +0.9
1,413,121 + QEN71_RS35790 0.36 -1.1
1,413,122 - QEN71_RS35790 0.36 -0.4
1,413,196 - QEN71_RS35790 0.43 -1.1
1,413,206 + QEN71_RS35790 0.44 -0.8
1,413,209 + QEN71_RS35790 0.44 -1.1
1,413,209 + QEN71_RS35790 0.44 -2.4
1,413,209 + QEN71_RS35790 0.44 -0.6
1,413,210 - QEN71_RS35790 0.44 -2.5
1,413,210 - QEN71_RS35790 0.44 -0.1
1,413,224 + QEN71_RS35790 0.45 -0.9
1,413,233 + QEN71_RS35790 0.46 -0.7
1,413,233 + QEN71_RS35790 0.46 -1.4
1,413,233 + QEN71_RS35790 0.46 -2.1
1,413,234 - QEN71_RS35790 0.46 -1.6
1,413,241 + QEN71_RS35790 0.47 -1.4
1,413,241 + QEN71_RS35790 0.47 -3.8
1,413,241 + QEN71_RS35790 0.47 -2.1
1,413,241 + QEN71_RS35790 0.47 -1.2
1,413,242 - QEN71_RS35790 0.47 +0.2
1,413,242 - QEN71_RS35790 0.47 -0.4
1,413,242 - QEN71_RS35790 0.47 -0.9
1,413,286 - QEN71_RS35790 0.51 -1.1
1,413,466 + QEN71_RS35790 0.67 -1.8
1,413,466 + QEN71_RS35790 0.67 -2.4
1,413,466 + QEN71_RS35790 0.67 -3.8
1,413,467 - QEN71_RS35790 0.67 -1.3

Or see this region's nucleotide sequence