Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34660

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34655 and QEN71_RS34660 are separated by 19 nucleotidesQEN71_RS34660 and QEN71_RS34665 are separated by 530 nucleotides QEN71_RS34655: QEN71_RS34655 - cytochrome P450, at 1,090,932 to 1,092,316 _RS34655 QEN71_RS34660: QEN71_RS34660 - sterol desaturase family protein, at 1,092,336 to 1,093,526 _RS34660 QEN71_RS34665: QEN71_RS34665 - hypothetical protein, at 1,094,057 to 1,094,440 _RS34665 Position (kb) 1092 1093 1094Strain fitness (log2 ratio) -2 -1 0 1at 1091.733 kb on + strand, within QEN71_RS34655at 1092.087 kb on + strand, within QEN71_RS34655at 1092.319 kb on - strandat 1092.427 kb on - strandat 1092.427 kb on - strandat 1092.440 kb on + strandat 1092.631 kb on - strand, within QEN71_RS34660at 1092.812 kb on + strand, within QEN71_RS34660at 1092.813 kb on - strand, within QEN71_RS34660at 1093.015 kb on + strand, within QEN71_RS34660at 1093.015 kb on + strand, within QEN71_RS34660at 1093.501 kb on + strandat 1093.502 kb on - strandat 1093.636 kb on - strandat 1093.917 kb on - strandat 1094.024 kb on - strandat 1094.262 kb on - strand, within QEN71_RS34665at 1094.351 kb on + strand, within QEN71_RS34665at 1094.351 kb on + strand, within QEN71_RS34665at 1094.422 kb on + strandat 1094.478 kb on + strandat 1094.479 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,091,733 + QEN71_RS34655 0.58 -1.1
1,092,087 + QEN71_RS34655 0.83 -1.3
1,092,319 - -0.2
1,092,427 - -1.1
1,092,427 - +0.4
1,092,440 + +0.0
1,092,631 - QEN71_RS34660 0.25 -2.2
1,092,812 + QEN71_RS34660 0.40 -0.0
1,092,813 - QEN71_RS34660 0.40 -0.8
1,093,015 + QEN71_RS34660 0.57 -0.8
1,093,015 + QEN71_RS34660 0.57 +1.0
1,093,501 + -1.4
1,093,502 - +0.4
1,093,636 - -0.7
1,093,917 - -1.4
1,094,024 - +0.3
1,094,262 - QEN71_RS34665 0.53 -0.8
1,094,351 + QEN71_RS34665 0.77 +0.7
1,094,351 + QEN71_RS34665 0.77 -0.1
1,094,422 + -0.3
1,094,478 + -0.3
1,094,479 - +1.4

Or see this region's nucleotide sequence