Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34495

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34485 and QEN71_RS34490 are separated by 30 nucleotidesQEN71_RS34490 and QEN71_RS34495 are separated by 29 nucleotidesQEN71_RS34495 and QEN71_RS34500 are separated by 27 nucleotides QEN71_RS34485: QEN71_RS34485 - FAD-binding oxidoreductase, at 1,051,580 to 1,052,881 _RS34485 QEN71_RS34490: QEN71_RS34490 - cupin domain-containing protein, at 1,052,912 to 1,053,280 _RS34490 QEN71_RS34495: QEN71_RS34495 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,053,310 to 1,054,251 _RS34495 QEN71_RS34500: QEN71_RS34500 - chloride channel protein, at 1,054,279 to 1,056,099 _RS34500 Position (kb) 1053 1054 1055Strain fitness (log2 ratio) -1 0 1at 1052.348 kb on + strand, within QEN71_RS34485at 1052.355 kb on - strand, within QEN71_RS34485at 1052.355 kb on - strand, within QEN71_RS34485at 1052.421 kb on - strand, within QEN71_RS34485at 1052.447 kb on + strand, within QEN71_RS34485at 1052.450 kb on + strand, within QEN71_RS34485at 1052.682 kb on - strand, within QEN71_RS34485at 1052.905 kb on + strandat 1052.939 kb on - strandat 1053.068 kb on + strand, within QEN71_RS34490at 1053.069 kb on - strand, within QEN71_RS34490at 1053.069 kb on - strand, within QEN71_RS34490at 1053.172 kb on + strand, within QEN71_RS34490at 1053.264 kb on - strandat 1053.378 kb on - strandat 1053.426 kb on - strand, within QEN71_RS34495at 1053.520 kb on + strand, within QEN71_RS34495at 1053.626 kb on + strand, within QEN71_RS34495at 1053.746 kb on + strand, within QEN71_RS34495at 1053.841 kb on + strand, within QEN71_RS34495at 1053.841 kb on + strand, within QEN71_RS34495at 1054.097 kb on + strand, within QEN71_RS34495at 1054.248 kb on - strandat 1054.587 kb on + strand, within QEN71_RS34500at 1054.588 kb on - strand, within QEN71_RS34500at 1054.676 kb on + strand, within QEN71_RS34500at 1054.724 kb on - strand, within QEN71_RS34500at 1054.724 kb on - strand, within QEN71_RS34500at 1054.772 kb on + strand, within QEN71_RS34500at 1054.772 kb on + strand, within QEN71_RS34500at 1054.772 kb on + strand, within QEN71_RS34500at 1054.772 kb on + strand, within QEN71_RS34500at 1054.773 kb on - strand, within QEN71_RS34500at 1054.800 kb on - strand, within QEN71_RS34500at 1055.038 kb on - strand, within QEN71_RS34500at 1055.039 kb on + strand, within QEN71_RS34500at 1055.039 kb on + strand, within QEN71_RS34500at 1055.040 kb on - strand, within QEN71_RS34500at 1055.040 kb on - strand, within QEN71_RS34500at 1055.161 kb on - strand, within QEN71_RS34500at 1055.211 kb on - strand, within QEN71_RS34500

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,052,348 + QEN71_RS34485 0.59 -0.2
1,052,355 - QEN71_RS34485 0.60 +0.3
1,052,355 - QEN71_RS34485 0.60 -0.4
1,052,421 - QEN71_RS34485 0.65 +0.8
1,052,447 + QEN71_RS34485 0.67 +1.1
1,052,450 + QEN71_RS34485 0.67 +0.6
1,052,682 - QEN71_RS34485 0.85 -1.0
1,052,905 + +0.0
1,052,939 - -1.5
1,053,068 + QEN71_RS34490 0.42 +0.4
1,053,069 - QEN71_RS34490 0.43 -1.5
1,053,069 - QEN71_RS34490 0.43 -0.5
1,053,172 + QEN71_RS34490 0.70 -0.4
1,053,264 - -0.8
1,053,378 - +0.6
1,053,426 - QEN71_RS34495 0.12 -0.1
1,053,520 + QEN71_RS34495 0.22 -1.0
1,053,626 + QEN71_RS34495 0.34 -0.0
1,053,746 + QEN71_RS34495 0.46 +0.4
1,053,841 + QEN71_RS34495 0.56 -0.3
1,053,841 + QEN71_RS34495 0.56 -0.1
1,054,097 + QEN71_RS34495 0.84 +0.1
1,054,248 - -0.8
1,054,587 + QEN71_RS34500 0.17 -0.6
1,054,588 - QEN71_RS34500 0.17 +1.2
1,054,676 + QEN71_RS34500 0.22 +0.3
1,054,724 - QEN71_RS34500 0.24 +0.3
1,054,724 - QEN71_RS34500 0.24 +0.2
1,054,772 + QEN71_RS34500 0.27 +1.6
1,054,772 + QEN71_RS34500 0.27 +0.1
1,054,772 + QEN71_RS34500 0.27 -0.4
1,054,772 + QEN71_RS34500 0.27 -0.4
1,054,773 - QEN71_RS34500 0.27 -0.9
1,054,800 - QEN71_RS34500 0.29 -0.6
1,055,038 - QEN71_RS34500 0.42 +0.2
1,055,039 + QEN71_RS34500 0.42 +0.1
1,055,039 + QEN71_RS34500 0.42 -0.1
1,055,040 - QEN71_RS34500 0.42 +0.5
1,055,040 - QEN71_RS34500 0.42 -0.3
1,055,161 - QEN71_RS34500 0.48 +0.2
1,055,211 - QEN71_RS34500 0.51 -0.7

Or see this region's nucleotide sequence