Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34040

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34035 and QEN71_RS34040 are separated by 198 nucleotidesQEN71_RS34040 and QEN71_RS34045 overlap by 11 nucleotides QEN71_RS34035: QEN71_RS34035 - formylmethanofuran dehydrogenase, at 953,651 to 954,979 _RS34035 QEN71_RS34040: QEN71_RS34040 - ATP-grasp domain-containing protein, at 955,178 to 956,224 _RS34040 QEN71_RS34045: QEN71_RS34045 - hydantoinase/oxoprolinase family protein, at 956,214 to 957,290 _RS34045 Position (kb) 955 956 957Strain fitness (log2 ratio) -1 0 1at 954.212 kb on - strand, within QEN71_RS34035at 954.231 kb on + strand, within QEN71_RS34035at 955.744 kb on + strand, within QEN71_RS34040at 955.744 kb on + strand, within QEN71_RS34040at 955.779 kb on - strand, within QEN71_RS34040at 955.872 kb on - strand, within QEN71_RS34040at 955.909 kb on + strand, within QEN71_RS34040at 955.910 kb on - strand, within QEN71_RS34040at 955.938 kb on - strand, within QEN71_RS34040at 955.959 kb on + strand, within QEN71_RS34040at 955.960 kb on - strand, within QEN71_RS34040at 956.508 kb on + strand, within QEN71_RS34045at 956.508 kb on + strand, within QEN71_RS34045at 956.508 kb on + strand, within QEN71_RS34045at 956.737 kb on - strand, within QEN71_RS34045at 956.845 kb on - strand, within QEN71_RS34045at 956.845 kb on - strand, within QEN71_RS34045at 957.088 kb on + strand, within QEN71_RS34045

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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954,212 - QEN71_RS34035 0.42 -0.6
954,231 + QEN71_RS34035 0.44 -0.5
955,744 + QEN71_RS34040 0.54 +0.0
955,744 + QEN71_RS34040 0.54 -0.3
955,779 - QEN71_RS34040 0.57 -0.6
955,872 - QEN71_RS34040 0.66 +0.7
955,909 + QEN71_RS34040 0.70 -0.6
955,910 - QEN71_RS34040 0.70 -1.1
955,938 - QEN71_RS34040 0.73 -1.0
955,959 + QEN71_RS34040 0.75 +0.5
955,960 - QEN71_RS34040 0.75 +0.4
956,508 + QEN71_RS34045 0.27 +0.3
956,508 + QEN71_RS34045 0.27 +1.0
956,508 + QEN71_RS34045 0.27 +0.9
956,737 - QEN71_RS34045 0.49 +1.1
956,845 - QEN71_RS34045 0.59 -0.8
956,845 - QEN71_RS34045 0.59 +0.5
957,088 + QEN71_RS34045 0.81 -1.0

Or see this region's nucleotide sequence