Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31575 and QEN71_RS31580 are separated by 187 nucleotides QEN71_RS31580 and QEN71_RS31585 are separated by 80 nucleotides QEN71_RS31585 and QEN71_RS31590 are separated by 9 nucleotides
QEN71_RS31575: QEN71_RS31575 - hypothetical protein, at 434,850 to 435,260
_RS31575
QEN71_RS31580: QEN71_RS31580 - Ohr family peroxiredoxin, at 435,448 to 435,897
_RS31580
QEN71_RS31585: QEN71_RS31585 - hypothetical protein, at 435,978 to 436,706
_RS31585
QEN71_RS31590: QEN71_RS31590 - IclR family transcriptional regulator, at 436,716 to 437,561
_RS31590
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 435.048 kb on + strand, within QEN71_RS31575 at 435.048 kb on + strand, within QEN71_RS31575 at 435.048 kb on + strand, within QEN71_RS31575 at 435.049 kb on - strand, within QEN71_RS31575 at 435.049 kb on - strand, within QEN71_RS31575 at 435.049 kb on - strand, within QEN71_RS31575 at 435.169 kb on + strand, within QEN71_RS31575 at 435.198 kb on + strand, within QEN71_RS31575 at 435.198 kb on + strand, within QEN71_RS31575 at 435.489 kb on + strand at 435.490 kb on - strand at 435.490 kb on - strand at 435.848 kb on - strand, within QEN71_RS31580 at 435.936 kb on + strand at 436.024 kb on + strand at 436.024 kb on + strand at 436.024 kb on + strand at 436.024 kb on + strand at 436.024 kb on + strand at 436.024 kb on + strand at 436.025 kb on - strand at 436.025 kb on - strand at 436.323 kb on - strand, within QEN71_RS31585 at 436.354 kb on - strand, within QEN71_RS31585 at 436.354 kb on - strand, within QEN71_RS31585 at 436.494 kb on + strand, within QEN71_RS31585 at 436.494 kb on + strand, within QEN71_RS31585 at 436.714 kb on + strand at 437.014 kb on + strand, within QEN71_RS31590 at 437.014 kb on + strand, within QEN71_RS31590 at 437.014 kb on + strand, within QEN71_RS31590 at 437.015 kb on - strand, within QEN71_RS31590 at 437.015 kb on - strand, within QEN71_RS31590 at 437.015 kb on - strand, within QEN71_RS31590 at 437.036 kb on - strand, within QEN71_RS31590 at 437.036 kb on - strand, within QEN71_RS31590 at 437.598 kb on + strand at 437.598 kb on + strand at 437.651 kb on + strand at 437.651 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 435,048 + QEN71_RS31575 0.48 -1.3 435,048 + QEN71_RS31575 0.48 +1.6 435,048 + QEN71_RS31575 0.48 -1.4 435,049 - QEN71_RS31575 0.48 -0.9 435,049 - QEN71_RS31575 0.48 +0.5 435,049 - QEN71_RS31575 0.48 -0.6 435,169 + QEN71_RS31575 0.78 -0.4 435,198 + QEN71_RS31575 0.85 -0.5 435,198 + QEN71_RS31575 0.85 -0.3 435,489 + -0.3 435,490 - +0.2 435,490 - -1.1 435,848 - QEN71_RS31580 0.89 -0.3 435,936 + +1.6 436,024 + +0.6 436,024 + -2.8 436,024 + -0.4 436,024 + -0.6 436,024 + -1.1 436,024 + -1.6 436,025 - +0.3 436,025 - -0.6 436,323 - QEN71_RS31585 0.47 -0.0 436,354 - QEN71_RS31585 0.52 -0.2 436,354 - QEN71_RS31585 0.52 -1.5 436,494 + QEN71_RS31585 0.71 -0.3 436,494 + QEN71_RS31585 0.71 -1.0 436,714 + -1.1 437,014 + QEN71_RS31590 0.35 -0.1 437,014 + QEN71_RS31590 0.35 +0.8 437,014 + QEN71_RS31590 0.35 +0.6 437,015 - QEN71_RS31590 0.35 +0.2 437,015 - QEN71_RS31590 0.35 +1.1 437,015 - QEN71_RS31590 0.35 -0.4 437,036 - QEN71_RS31590 0.38 -0.0 437,036 - QEN71_RS31590 0.38 -0.1 437,598 + -0.0 437,598 + +0.8 437,651 + -0.4 437,651 + -0.0
Or see this region's nucleotide sequence