Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30950 and QEN71_RS30955 are separated by 3 nucleotides QEN71_RS30955 and QEN71_RS30960 are separated by 8 nucleotides QEN71_RS30960 and QEN71_RS30965 overlap by 4 nucleotides QEN71_RS30965 and QEN71_RS30970 are separated by 289 nucleotides
QEN71_RS30950: QEN71_RS30950 - secretin N-terminal domain-containing protein, at 292,759 to 295,050
_RS30950
QEN71_RS30955: QEN71_RS30955 - type II secretion system protein, at 295,054 to 295,623
_RS30955
QEN71_RS30960: QEN71_RS30960 - type II secretion system protein, at 295,632 to 296,024
_RS30960
QEN71_RS30965: QEN71_RS30965 - type II secretion system protein, at 296,021 to 296,641
_RS30965
QEN71_RS30970: QEN71_RS30970 - sigma-54 dependent transcriptional regulator, at 296,931 to 298,316
_RS30970
Position (kb) 296
297 Strain fitness (log2 ratio) -1
0
1 at 295.046 kb on - strand at 295.261 kb on + strand, within QEN71_RS30955 at 295.261 kb on + strand, within QEN71_RS30955 at 295.261 kb on + strand, within QEN71_RS30955 at 295.262 kb on - strand, within QEN71_RS30955 at 295.263 kb on + strand, within QEN71_RS30955 at 295.264 kb on - strand, within QEN71_RS30955 at 295.264 kb on - strand, within QEN71_RS30955 at 295.279 kb on - strand, within QEN71_RS30955 at 295.418 kb on - strand, within QEN71_RS30955 at 295.738 kb on - strand, within QEN71_RS30960 at 295.738 kb on - strand, within QEN71_RS30960 at 295.873 kb on - strand, within QEN71_RS30960 at 295.960 kb on - strand, within QEN71_RS30960 at 296.131 kb on + strand, within QEN71_RS30965 at 296.132 kb on - strand, within QEN71_RS30965 at 296.366 kb on + strand, within QEN71_RS30965 at 296.367 kb on - strand, within QEN71_RS30965 at 296.477 kb on + strand, within QEN71_RS30965 at 296.640 kb on - strand at 296.640 kb on - strand at 296.669 kb on + strand at 296.671 kb on + strand at 297.033 kb on - strand at 297.033 kb on - strand at 297.172 kb on + strand, within QEN71_RS30970 at 297.172 kb on + strand, within QEN71_RS30970 at 297.175 kb on + strand, within QEN71_RS30970 at 297.176 kb on - strand, within QEN71_RS30970 at 297.237 kb on + strand, within QEN71_RS30970 at 297.237 kb on + strand, within QEN71_RS30970 at 297.237 kb on + strand, within QEN71_RS30970 at 297.412 kb on + strand, within QEN71_RS30970 at 297.416 kb on + strand, within QEN71_RS30970 at 297.416 kb on + strand, within QEN71_RS30970 at 297.417 kb on - strand, within QEN71_RS30970 at 297.570 kb on + strand, within QEN71_RS30970
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 295,046 - +1.4 295,261 + QEN71_RS30955 0.36 +0.4 295,261 + QEN71_RS30955 0.36 +0.1 295,261 + QEN71_RS30955 0.36 -0.4 295,262 - QEN71_RS30955 0.36 -0.6 295,263 + QEN71_RS30955 0.37 +0.2 295,264 - QEN71_RS30955 0.37 +0.1 295,264 - QEN71_RS30955 0.37 -1.1 295,279 - QEN71_RS30955 0.39 -0.4 295,418 - QEN71_RS30955 0.64 -0.6 295,738 - QEN71_RS30960 0.27 -1.4 295,738 - QEN71_RS30960 0.27 +0.2 295,873 - QEN71_RS30960 0.61 +0.1 295,960 - QEN71_RS30960 0.83 -0.0 296,131 + QEN71_RS30965 0.18 +0.8 296,132 - QEN71_RS30965 0.18 +0.8 296,366 + QEN71_RS30965 0.56 +0.9 296,367 - QEN71_RS30965 0.56 +0.0 296,477 + QEN71_RS30965 0.73 +0.0 296,640 - +0.0 296,640 - -0.8 296,669 + +0.2 296,671 + -0.1 297,033 - -1.0 297,033 - -0.9 297,172 + QEN71_RS30970 0.17 +0.2 297,172 + QEN71_RS30970 0.17 +0.6 297,175 + QEN71_RS30970 0.18 +0.6 297,176 - QEN71_RS30970 0.18 +1.7 297,237 + QEN71_RS30970 0.22 -1.3 297,237 + QEN71_RS30970 0.22 +0.5 297,237 + QEN71_RS30970 0.22 -0.3 297,412 + QEN71_RS30970 0.35 +1.0 297,416 + QEN71_RS30970 0.35 +0.2 297,416 + QEN71_RS30970 0.35 -0.2 297,417 - QEN71_RS30970 0.35 -1.0 297,570 + QEN71_RS30970 0.46 +0.2
Or see this region's nucleotide sequence