Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS24890

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS24885 and QEN71_RS24890 are separated by 226 nucleotidesQEN71_RS24890 and QEN71_RS24895 are separated by 131 nucleotides QEN71_RS24885: QEN71_RS24885 - porin, at 5,534,176 to 5,535,306 _RS24885 QEN71_RS24890: QEN71_RS24890 - P-II family nitrogen regulator, at 5,535,533 to 5,535,871 _RS24890 QEN71_RS24895: QEN71_RS24895 - NAD(+) synthase, at 5,536,003 to 5,538,060 _RS24895 Position (kb) 5535 5536Strain fitness (log2 ratio) -3 -2 -1 0 1at 5534.662 kb on + strand, within QEN71_RS24885at 5534.662 kb on + strand, within QEN71_RS24885at 5534.662 kb on + strand, within QEN71_RS24885at 5534.662 kb on + strand, within QEN71_RS24885at 5534.695 kb on + strand, within QEN71_RS24885at 5534.695 kb on + strand, within QEN71_RS24885at 5534.695 kb on + strand, within QEN71_RS24885at 5534.696 kb on - strand, within QEN71_RS24885at 5534.704 kb on + strand, within QEN71_RS24885at 5534.704 kb on + strand, within QEN71_RS24885at 5534.704 kb on + strand, within QEN71_RS24885at 5534.704 kb on + strand, within QEN71_RS24885at 5534.704 kb on + strand, within QEN71_RS24885at 5534.803 kb on + strand, within QEN71_RS24885at 5534.804 kb on - strand, within QEN71_RS24885at 5534.804 kb on - strand, within QEN71_RS24885at 5534.804 kb on - strand, within QEN71_RS24885at 5534.804 kb on - strand, within QEN71_RS24885at 5534.804 kb on - strand, within QEN71_RS24885at 5534.804 kb on - strand, within QEN71_RS24885at 5534.836 kb on + strand, within QEN71_RS24885at 5534.836 kb on + strand, within QEN71_RS24885at 5534.836 kb on + strand, within QEN71_RS24885at 5534.836 kb on + strand, within QEN71_RS24885at 5534.836 kb on + strand, within QEN71_RS24885at 5534.837 kb on - strand, within QEN71_RS24885at 5534.881 kb on + strand, within QEN71_RS24885at 5534.881 kb on + strand, within QEN71_RS24885at 5534.881 kb on + strand, within QEN71_RS24885at 5534.882 kb on - strand, within QEN71_RS24885at 5534.882 kb on - strand, within QEN71_RS24885at 5534.882 kb on - strand, within QEN71_RS24885at 5534.887 kb on + strand, within QEN71_RS24885at 5534.887 kb on + strand, within QEN71_RS24885at 5534.887 kb on + strand, within QEN71_RS24885at 5534.887 kb on + strand, within QEN71_RS24885at 5534.887 kb on + strand, within QEN71_RS24885at 5534.888 kb on - strand, within QEN71_RS24885at 5534.888 kb on - strand, within QEN71_RS24885at 5534.899 kb on + strand, within QEN71_RS24885at 5534.899 kb on + strand, within QEN71_RS24885at 5534.899 kb on + strand, within QEN71_RS24885at 5534.974 kb on - strand, within QEN71_RS24885at 5535.074 kb on - strand, within QEN71_RS24885at 5535.115 kb on + strand, within QEN71_RS24885at 5535.115 kb on + strand, within QEN71_RS24885at 5535.115 kb on + strand, within QEN71_RS24885at 5535.115 kb on + strand, within QEN71_RS24885at 5535.115 kb on + strand, within QEN71_RS24885at 5535.116 kb on - strand, within QEN71_RS24885at 5535.133 kb on + strand, within QEN71_RS24885at 5535.133 kb on + strand, within QEN71_RS24885at 5535.133 kb on + strand, within QEN71_RS24885at 5535.133 kb on + strand, within QEN71_RS24885at 5535.133 kb on + strand, within QEN71_RS24885at 5535.134 kb on - strand, within QEN71_RS24885at 5535.134 kb on - strand, within QEN71_RS24885at 5535.134 kb on - strand, within QEN71_RS24885at 5535.134 kb on - strand, within QEN71_RS24885at 5535.202 kb on + strandat 5535.202 kb on + strandat 5535.202 kb on + strandat 5535.203 kb on + strandat 5535.203 kb on - strandat 5535.203 kb on - strandat 5535.203 kb on - strandat 5535.203 kb on - strandat 5535.203 kb on - strandat 5535.203 kb on - strandat 5535.203 kb on - strandat 5535.203 kb on - strandat 5535.203 kb on - strandat 5535.203 kb on - strandat 5535.280 kb on + strandat 5535.281 kb on - strandat 5535.289 kb on - strandat 5535.304 kb on + strandat 5535.305 kb on - strandat 5535.318 kb on + strandat 5535.319 kb on - strandat 5535.319 kb on - strandat 5535.332 kb on + strandat 5535.332 kb on + strandat 5535.332 kb on + strandat 5535.333 kb on - strandat 5535.333 kb on - strandat 5535.333 kb on - strandat 5535.520 kb on + strandat 5535.520 kb on + strandat 5535.520 kb on + strandat 5535.520 kb on + strandat 5535.563 kb on - strandat 5535.563 kb on - strandat 5535.720 kb on + strand, within QEN71_RS24890at 5535.720 kb on + strand, within QEN71_RS24890at 5535.721 kb on - strand, within QEN71_RS24890at 5535.721 kb on - strand, within QEN71_RS24890at 5535.735 kb on + strand, within QEN71_RS24890at 5535.745 kb on + strand, within QEN71_RS24890at 5535.745 kb on + strand, within QEN71_RS24890at 5535.745 kb on + strand, within QEN71_RS24890at 5535.745 kb on + strand, within QEN71_RS24890at 5535.745 kb on + strand, within QEN71_RS24890at 5535.746 kb on - strand, within QEN71_RS24890at 5535.746 kb on - strand, within QEN71_RS24890at 5535.746 kb on - strand, within QEN71_RS24890at 5535.746 kb on - strand, within QEN71_RS24890at 5535.746 kb on - strand, within QEN71_RS24890at 5535.746 kb on - strand, within QEN71_RS24890at 5535.893 kb on - strandat 5535.904 kb on + strandat 5535.904 kb on + strandat 5535.905 kb on - strandat 5535.991 kb on + strandat 5535.992 kb on - strandat 5535.992 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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5,534,662 + QEN71_RS24885 0.43 +0.0
5,534,662 + QEN71_RS24885 0.43 +0.8
5,534,662 + QEN71_RS24885 0.43 -0.0
5,534,662 + QEN71_RS24885 0.43 -0.1
5,534,695 + QEN71_RS24885 0.46 -0.6
5,534,695 + QEN71_RS24885 0.46 +0.4
5,534,695 + QEN71_RS24885 0.46 -0.0
5,534,696 - QEN71_RS24885 0.46 +0.2
5,534,704 + QEN71_RS24885 0.47 +0.3
5,534,704 + QEN71_RS24885 0.47 +0.7
5,534,704 + QEN71_RS24885 0.47 -0.4
5,534,704 + QEN71_RS24885 0.47 +0.2
5,534,704 + QEN71_RS24885 0.47 -0.6
5,534,803 + QEN71_RS24885 0.55 -0.1
5,534,804 - QEN71_RS24885 0.56 -0.5
5,534,804 - QEN71_RS24885 0.56 +0.4
5,534,804 - QEN71_RS24885 0.56 +0.4
5,534,804 - QEN71_RS24885 0.56 -0.8
5,534,804 - QEN71_RS24885 0.56 -0.6
5,534,804 - QEN71_RS24885 0.56 +0.6
5,534,836 + QEN71_RS24885 0.58 +0.1
5,534,836 + QEN71_RS24885 0.58 +0.6
5,534,836 + QEN71_RS24885 0.58 -0.0
5,534,836 + QEN71_RS24885 0.58 -0.5
5,534,836 + QEN71_RS24885 0.58 +0.5
5,534,837 - QEN71_RS24885 0.58 -0.1
5,534,881 + QEN71_RS24885 0.62 +0.2
5,534,881 + QEN71_RS24885 0.62 -0.8
5,534,881 + QEN71_RS24885 0.62 +0.6
5,534,882 - QEN71_RS24885 0.62 +0.8
5,534,882 - QEN71_RS24885 0.62 +0.0
5,534,882 - QEN71_RS24885 0.62 -0.0
5,534,887 + QEN71_RS24885 0.63 -2.2
5,534,887 + QEN71_RS24885 0.63 -0.5
5,534,887 + QEN71_RS24885 0.63 +1.0
5,534,887 + QEN71_RS24885 0.63 -0.7
5,534,887 + QEN71_RS24885 0.63 +0.2
5,534,888 - QEN71_RS24885 0.63 +1.2
5,534,888 - QEN71_RS24885 0.63 -0.9
5,534,899 + QEN71_RS24885 0.64 -2.5
5,534,899 + QEN71_RS24885 0.64 +0.4
5,534,899 + QEN71_RS24885 0.64 +1.2
5,534,974 - QEN71_RS24885 0.71 +0.4
5,535,074 - QEN71_RS24885 0.79 +1.2
5,535,115 + QEN71_RS24885 0.83 -0.4
5,535,115 + QEN71_RS24885 0.83 +0.5
5,535,115 + QEN71_RS24885 0.83 -0.7
5,535,115 + QEN71_RS24885 0.83 +0.4
5,535,115 + QEN71_RS24885 0.83 -0.0
5,535,116 - QEN71_RS24885 0.83 -0.8
5,535,133 + QEN71_RS24885 0.85 +1.0
5,535,133 + QEN71_RS24885 0.85 +1.5
5,535,133 + QEN71_RS24885 0.85 +1.3
5,535,133 + QEN71_RS24885 0.85 +0.7
5,535,133 + QEN71_RS24885 0.85 +0.8
5,535,134 - QEN71_RS24885 0.85 +0.4
5,535,134 - QEN71_RS24885 0.85 +1.6
5,535,134 - QEN71_RS24885 0.85 -0.3
5,535,134 - QEN71_RS24885 0.85 -0.2
5,535,202 + +0.2
5,535,202 + +0.0
5,535,202 + -0.6
5,535,203 + +0.4
5,535,203 - -0.9
5,535,203 - +0.2
5,535,203 - +0.1
5,535,203 - +1.0
5,535,203 - -1.3
5,535,203 - -0.0
5,535,203 - -0.3
5,535,203 - -0.4
5,535,203 - -0.9
5,535,203 - -0.3
5,535,280 + -1.1
5,535,281 - -0.0
5,535,289 - +0.2
5,535,304 + -0.3
5,535,305 - -0.5
5,535,318 + +0.1
5,535,319 - +1.0
5,535,319 - -0.8
5,535,332 + +1.1
5,535,332 + +0.8
5,535,332 + -1.2
5,535,333 - -0.3
5,535,333 - +0.2
5,535,333 - -1.0
5,535,520 + +0.3
5,535,520 + +0.2
5,535,520 + -0.2
5,535,520 + -0.8
5,535,563 - -1.3
5,535,563 - +0.9
5,535,720 + QEN71_RS24890 0.55 -2.8
5,535,720 + QEN71_RS24890 0.55 -2.0
5,535,721 - QEN71_RS24890 0.55 -1.4
5,535,721 - QEN71_RS24890 0.55 -1.1
5,535,735 + QEN71_RS24890 0.60 -1.9
5,535,745 + QEN71_RS24890 0.63 -1.6
5,535,745 + QEN71_RS24890 0.63 -2.2
5,535,745 + QEN71_RS24890 0.63 -1.0
5,535,745 + QEN71_RS24890 0.63 -0.3
5,535,745 + QEN71_RS24890 0.63 -1.5
5,535,746 - QEN71_RS24890 0.63 -1.9
5,535,746 - QEN71_RS24890 0.63 +1.4
5,535,746 - QEN71_RS24890 0.63 -0.2
5,535,746 - QEN71_RS24890 0.63 -0.8
5,535,746 - QEN71_RS24890 0.63 -0.7
5,535,746 - QEN71_RS24890 0.63 -3.6
5,535,893 - -0.6
5,535,904 + -1.3
5,535,904 + -1.9
5,535,905 - +0.3
5,535,991 + -0.3
5,535,992 - -0.8
5,535,992 - +0.3

Or see this region's nucleotide sequence