Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS24375

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS24360 and QEN71_RS24365 overlap by 4 nucleotidesQEN71_RS24365 and QEN71_RS24370 overlap by 4 nucleotidesQEN71_RS24370 and QEN71_RS24375 are separated by 160 nucleotidesQEN71_RS24375 and QEN71_RS24380 are separated by 63 nucleotidesQEN71_RS24380 and QEN71_RS24385 are separated by 77 nucleotides QEN71_RS24360: QEN71_RS24360 - potassium-transporting ATPase subunit KdpA, at 5,421,169 to 5,422,974 _RS24360 QEN71_RS24365: QEN71_RS24365 - K(+)-transporting ATPase subunit F, at 5,422,971 to 5,423,063 _RS24365 QEN71_RS24370: QEN71_RS24370 - potassium ABC transporter ATPase, at 5,423,060 to 5,423,173 _RS24370 QEN71_RS24375: QEN71_RS24375 - quinone oxidoreductase, at 5,423,334 to 5,424,308 _RS24375 QEN71_RS24380: QEN71_RS24380 - methylglyoxal synthase, at 5,424,372 to 5,424,761 _RS24380 QEN71_RS24385: QEN71_RS24385 - SDR family oxidoreductase, at 5,424,839 to 5,425,618 _RS24385 Position (kb) 5423 5424 5425Strain fitness (log2 ratio) -3 -2 -1 0 1at 5422.364 kb on + strand, within QEN71_RS24360at 5422.365 kb on - strand, within QEN71_RS24360at 5422.365 kb on - strand, within QEN71_RS24360at 5422.439 kb on + strand, within QEN71_RS24360at 5422.439 kb on + strand, within QEN71_RS24360at 5422.439 kb on + strand, within QEN71_RS24360at 5422.439 kb on + strand, within QEN71_RS24360at 5422.439 kb on + strand, within QEN71_RS24360at 5422.439 kb on + strand, within QEN71_RS24360at 5422.440 kb on - strand, within QEN71_RS24360at 5422.440 kb on - strand, within QEN71_RS24360at 5422.440 kb on - strand, within QEN71_RS24360at 5422.440 kb on - strand, within QEN71_RS24360at 5422.589 kb on + strand, within QEN71_RS24360at 5422.589 kb on + strand, within QEN71_RS24360at 5422.590 kb on - strand, within QEN71_RS24360at 5422.613 kb on + strand, within QEN71_RS24360at 5422.614 kb on - strand, within QEN71_RS24360at 5422.614 kb on - strand, within QEN71_RS24360at 5422.614 kb on - strand, within QEN71_RS24360at 5422.733 kb on + strand, within QEN71_RS24360at 5422.782 kb on - strand, within QEN71_RS24360at 5422.829 kb on + strandat 5422.898 kb on + strandat 5423.002 kb on + strand, within QEN71_RS24365at 5423.002 kb on + strand, within QEN71_RS24365at 5423.011 kb on + strand, within QEN71_RS24365at 5423.142 kb on - strand, within QEN71_RS24370at 5423.160 kb on + strand, within QEN71_RS24370at 5423.160 kb on + strand, within QEN71_RS24370at 5423.161 kb on - strand, within QEN71_RS24370at 5423.161 kb on - strand, within QEN71_RS24370at 5423.216 kb on - strandat 5423.230 kb on - strandat 5423.230 kb on - strandat 5423.316 kb on + strandat 5423.316 kb on + strandat 5423.316 kb on + strandat 5423.317 kb on - strandat 5423.414 kb on - strandat 5423.492 kb on + strand, within QEN71_RS24375at 5423.506 kb on + strand, within QEN71_RS24375at 5423.506 kb on + strand, within QEN71_RS24375at 5423.506 kb on + strand, within QEN71_RS24375at 5423.506 kb on + strand, within QEN71_RS24375at 5423.506 kb on + strand, within QEN71_RS24375at 5423.506 kb on + strand, within QEN71_RS24375at 5423.506 kb on + strand, within QEN71_RS24375at 5423.506 kb on + strand, within QEN71_RS24375at 5423.506 kb on + strand, within QEN71_RS24375at 5423.506 kb on + strand, within QEN71_RS24375at 5423.507 kb on - strand, within QEN71_RS24375at 5423.507 kb on - strand, within QEN71_RS24375at 5423.507 kb on - strand, within QEN71_RS24375at 5423.507 kb on - strand, within QEN71_RS24375at 5423.507 kb on - strand, within QEN71_RS24375at 5423.507 kb on - strand, within QEN71_RS24375at 5423.507 kb on - strand, within QEN71_RS24375at 5423.507 kb on - strand, within QEN71_RS24375at 5423.510 kb on + strand, within QEN71_RS24375at 5423.511 kb on - strand, within QEN71_RS24375at 5423.511 kb on - strand, within QEN71_RS24375at 5423.511 kb on - strand, within QEN71_RS24375at 5423.511 kb on - strand, within QEN71_RS24375at 5423.613 kb on - strand, within QEN71_RS24375at 5423.613 kb on - strand, within QEN71_RS24375at 5423.613 kb on - strand, within QEN71_RS24375at 5423.645 kb on + strand, within QEN71_RS24375at 5423.671 kb on + strand, within QEN71_RS24375at 5423.671 kb on + strand, within QEN71_RS24375at 5423.671 kb on + strand, within QEN71_RS24375at 5423.671 kb on + strand, within QEN71_RS24375at 5423.672 kb on - strand, within QEN71_RS24375at 5423.737 kb on + strand, within QEN71_RS24375at 5423.750 kb on - strand, within QEN71_RS24375at 5423.750 kb on - strand, within QEN71_RS24375at 5423.905 kb on + strand, within QEN71_RS24375at 5423.905 kb on + strand, within QEN71_RS24375at 5423.905 kb on + strand, within QEN71_RS24375at 5423.906 kb on - strand, within QEN71_RS24375at 5423.923 kb on + strand, within QEN71_RS24375at 5423.923 kb on + strand, within QEN71_RS24375at 5423.923 kb on + strand, within QEN71_RS24375at 5423.923 kb on + strand, within QEN71_RS24375at 5424.052 kb on + strand, within QEN71_RS24375at 5424.052 kb on + strand, within QEN71_RS24375at 5424.052 kb on + strand, within QEN71_RS24375at 5424.053 kb on - strand, within QEN71_RS24375at 5424.053 kb on - strand, within QEN71_RS24375at 5424.053 kb on - strand, within QEN71_RS24375at 5424.053 kb on - strand, within QEN71_RS24375at 5424.173 kb on - strand, within QEN71_RS24375at 5424.173 kb on - strand, within QEN71_RS24375at 5424.173 kb on - strand, within QEN71_RS24375at 5424.173 kb on - strand, within QEN71_RS24375at 5424.182 kb on + strand, within QEN71_RS24375at 5424.182 kb on + strand, within QEN71_RS24375at 5424.182 kb on + strand, within QEN71_RS24375at 5424.183 kb on - strand, within QEN71_RS24375at 5424.184 kb on + strand, within QEN71_RS24375at 5424.184 kb on + strand, within QEN71_RS24375at 5424.184 kb on + strand, within QEN71_RS24375at 5424.184 kb on + strand, within QEN71_RS24375at 5424.184 kb on + strand, within QEN71_RS24375at 5424.184 kb on + strand, within QEN71_RS24375at 5424.184 kb on + strand, within QEN71_RS24375at 5424.184 kb on + strand, within QEN71_RS24375at 5424.184 kb on + strand, within QEN71_RS24375at 5424.184 kb on + strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.185 kb on - strand, within QEN71_RS24375at 5424.635 kb on + strand, within QEN71_RS24380at 5424.636 kb on - strand, within QEN71_RS24380at 5424.683 kb on + strand, within QEN71_RS24380at 5424.683 kb on + strand, within QEN71_RS24380at 5424.684 kb on - strand, within QEN71_RS24380at 5424.684 kb on - strand, within QEN71_RS24380at 5424.843 kb on + strandat 5424.843 kb on + strandat 5424.843 kb on + strandat 5424.843 kb on + strandat 5424.844 kb on - strandat 5424.844 kb on - strandat 5424.844 kb on - strandat 5424.844 kb on - strandat 5424.892 kb on + strandat 5424.893 kb on - strandat 5424.893 kb on - strandat 5424.893 kb on - strandat 5424.893 kb on - strandat 5424.893 kb on - strandat 5424.893 kb on - strandat 5424.894 kb on + strandat 5424.894 kb on + strandat 5424.894 kb on + strandat 5424.894 kb on + strandat 5424.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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5,422,364 + QEN71_RS24360 0.66 -0.4
5,422,365 - QEN71_RS24360 0.66 -1.1
5,422,365 - QEN71_RS24360 0.66 -0.3
5,422,439 + QEN71_RS24360 0.70 -0.3
5,422,439 + QEN71_RS24360 0.70 +0.1
5,422,439 + QEN71_RS24360 0.70 -0.2
5,422,439 + QEN71_RS24360 0.70 -0.2
5,422,439 + QEN71_RS24360 0.70 -0.4
5,422,439 + QEN71_RS24360 0.70 -0.4
5,422,440 - QEN71_RS24360 0.70 +0.6
5,422,440 - QEN71_RS24360 0.70 +0.7
5,422,440 - QEN71_RS24360 0.70 -0.0
5,422,440 - QEN71_RS24360 0.70 +0.2
5,422,589 + QEN71_RS24360 0.79 -0.7
5,422,589 + QEN71_RS24360 0.79 -0.0
5,422,590 - QEN71_RS24360 0.79 +1.3
5,422,613 + QEN71_RS24360 0.80 -0.3
5,422,614 - QEN71_RS24360 0.80 -0.5
5,422,614 - QEN71_RS24360 0.80 -0.7
5,422,614 - QEN71_RS24360 0.80 +1.0
5,422,733 + QEN71_RS24360 0.87 -2.1
5,422,782 - QEN71_RS24360 0.89 +0.3
5,422,829 + +0.4
5,422,898 + -1.3
5,423,002 + QEN71_RS24365 0.33 -1.2
5,423,002 + QEN71_RS24365 0.33 +1.6
5,423,011 + QEN71_RS24365 0.43 +0.8
5,423,142 - QEN71_RS24370 0.72 -1.8
5,423,160 + QEN71_RS24370 0.88 +0.9
5,423,160 + QEN71_RS24370 0.88 -0.0
5,423,161 - QEN71_RS24370 0.89 -1.4
5,423,161 - QEN71_RS24370 0.89 +0.4
5,423,216 - -1.5
5,423,230 - -1.0
5,423,230 - -1.3
5,423,316 + -0.0
5,423,316 + -0.2
5,423,316 + -0.1
5,423,317 - -1.0
5,423,414 - +0.9
5,423,492 + QEN71_RS24375 0.16 -0.3
5,423,506 + QEN71_RS24375 0.18 +0.7
5,423,506 + QEN71_RS24375 0.18 +0.0
5,423,506 + QEN71_RS24375 0.18 -0.8
5,423,506 + QEN71_RS24375 0.18 +0.4
5,423,506 + QEN71_RS24375 0.18 -0.1
5,423,506 + QEN71_RS24375 0.18 -1.5
5,423,506 + QEN71_RS24375 0.18 -0.6
5,423,506 + QEN71_RS24375 0.18 -0.3
5,423,506 + QEN71_RS24375 0.18 +0.2
5,423,506 + QEN71_RS24375 0.18 -0.6
5,423,507 - QEN71_RS24375 0.18 -0.3
5,423,507 - QEN71_RS24375 0.18 -0.3
5,423,507 - QEN71_RS24375 0.18 +0.0
5,423,507 - QEN71_RS24375 0.18 +0.7
5,423,507 - QEN71_RS24375 0.18 -0.8
5,423,507 - QEN71_RS24375 0.18 -0.0
5,423,507 - QEN71_RS24375 0.18 -0.8
5,423,507 - QEN71_RS24375 0.18 +0.4
5,423,510 + QEN71_RS24375 0.18 -0.3
5,423,511 - QEN71_RS24375 0.18 +0.2
5,423,511 - QEN71_RS24375 0.18 -1.7
5,423,511 - QEN71_RS24375 0.18 -2.1
5,423,511 - QEN71_RS24375 0.18 -0.0
5,423,613 - QEN71_RS24375 0.29 +0.6
5,423,613 - QEN71_RS24375 0.29 -0.6
5,423,613 - QEN71_RS24375 0.29 -0.1
5,423,645 + QEN71_RS24375 0.32 +0.1
5,423,671 + QEN71_RS24375 0.35 -0.3
5,423,671 + QEN71_RS24375 0.35 +0.2
5,423,671 + QEN71_RS24375 0.35 +0.1
5,423,671 + QEN71_RS24375 0.35 -2.3
5,423,672 - QEN71_RS24375 0.35 +0.0
5,423,737 + QEN71_RS24375 0.41 -0.4
5,423,750 - QEN71_RS24375 0.43 -0.5
5,423,750 - QEN71_RS24375 0.43 -0.5
5,423,905 + QEN71_RS24375 0.59 -0.8
5,423,905 + QEN71_RS24375 0.59 -0.6
5,423,905 + QEN71_RS24375 0.59 +0.6
5,423,906 - QEN71_RS24375 0.59 -0.1
5,423,923 + QEN71_RS24375 0.60 -1.0
5,423,923 + QEN71_RS24375 0.60 +0.7
5,423,923 + QEN71_RS24375 0.60 +0.7
5,423,923 + QEN71_RS24375 0.60 -1.5
5,424,052 + QEN71_RS24375 0.74 +1.2
5,424,052 + QEN71_RS24375 0.74 +0.4
5,424,052 + QEN71_RS24375 0.74 -0.9
5,424,053 - QEN71_RS24375 0.74 -2.5
5,424,053 - QEN71_RS24375 0.74 -0.0
5,424,053 - QEN71_RS24375 0.74 +0.5
5,424,053 - QEN71_RS24375 0.74 +0.8
5,424,173 - QEN71_RS24375 0.86 -0.7
5,424,173 - QEN71_RS24375 0.86 -0.0
5,424,173 - QEN71_RS24375 0.86 -0.1
5,424,173 - QEN71_RS24375 0.86 +0.1
5,424,182 + QEN71_RS24375 0.87 +1.0
5,424,182 + QEN71_RS24375 0.87 -0.8
5,424,182 + QEN71_RS24375 0.87 -1.0
5,424,183 - QEN71_RS24375 0.87 -0.8
5,424,184 + QEN71_RS24375 0.87 -0.8
5,424,184 + QEN71_RS24375 0.87 -1.2
5,424,184 + QEN71_RS24375 0.87 +1.5
5,424,184 + QEN71_RS24375 0.87 +1.0
5,424,184 + QEN71_RS24375 0.87 -0.7
5,424,184 + QEN71_RS24375 0.87 +1.0
5,424,184 + QEN71_RS24375 0.87 +0.2
5,424,184 + QEN71_RS24375 0.87 -1.4
5,424,184 + QEN71_RS24375 0.87 +0.5
5,424,184 + QEN71_RS24375 0.87 -0.7
5,424,185 - QEN71_RS24375 0.87 -2.8
5,424,185 - QEN71_RS24375 0.87 -0.4
5,424,185 - QEN71_RS24375 0.87 -0.2
5,424,185 - QEN71_RS24375 0.87 +0.0
5,424,185 - QEN71_RS24375 0.87 -0.0
5,424,185 - QEN71_RS24375 0.87 +0.6
5,424,185 - QEN71_RS24375 0.87 -0.5
5,424,185 - QEN71_RS24375 0.87 +0.8
5,424,185 - QEN71_RS24375 0.87 -0.2
5,424,185 - QEN71_RS24375 0.87 -1.2
5,424,185 - QEN71_RS24375 0.87 +0.8
5,424,185 - QEN71_RS24375 0.87 -0.6
5,424,635 + QEN71_RS24380 0.67 -1.0
5,424,636 - QEN71_RS24380 0.68 +0.4
5,424,683 + QEN71_RS24380 0.80 +1.1
5,424,683 + QEN71_RS24380 0.80 +0.1
5,424,684 - QEN71_RS24380 0.80 -0.0
5,424,684 - QEN71_RS24380 0.80 -0.9
5,424,843 + -1.3
5,424,843 + -1.2
5,424,843 + +0.0
5,424,843 + -0.1
5,424,844 - +0.6
5,424,844 - -1.2
5,424,844 - -0.0
5,424,844 - -0.6
5,424,892 + -0.8
5,424,893 - -0.4
5,424,893 - +0.8
5,424,893 - +0.5
5,424,893 - -0.6
5,424,893 - -0.3
5,424,893 - -0.6
5,424,894 + -0.9
5,424,894 + -0.6
5,424,894 + +0.0
5,424,894 + -0.0
5,424,895 - -0.5

Or see this region's nucleotide sequence