Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS20585

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS20575 and QEN71_RS20580 are separated by 2 nucleotidesQEN71_RS20580 and QEN71_RS20585 overlap by 4 nucleotidesQEN71_RS20585 and QEN71_RS20590 overlap by 4 nucleotidesQEN71_RS20590 and QEN71_RS20595 are separated by 35 nucleotidesQEN71_RS20595 and QEN71_RS20600 are separated by 155 nucleotides QEN71_RS20575: QEN71_RS20575 - potassium transporter Kup, at 4,566,145 to 4,568,067 _RS20575 QEN71_RS20580: QEN71_RS20580 - nitrile hydratase subunit alpha, at 4,568,070 to 4,568,735 _RS20580 QEN71_RS20585: QEN71_RS20585 - nitrile hydratase subunit beta, at 4,568,732 to 4,569,397 _RS20585 QEN71_RS20590: QEN71_RS20590 - nitrile hydratase accessory protein, at 4,569,394 to 4,569,771 _RS20590 QEN71_RS20595: QEN71_RS20595 - hypothetical protein, at 4,569,807 to 4,569,953 _RS20595 QEN71_RS20600: QEN71_RS20600 - PIG-L family deacetylase, at 4,570,109 to 4,570,825 _RS20600 Position (kb) 4568 4569 4570Strain fitness (log2 ratio) -2 -1 0 1 2at 4567.742 kb on + strand, within QEN71_RS20575at 4567.743 kb on - strand, within QEN71_RS20575at 4567.743 kb on - strand, within QEN71_RS20575at 4567.743 kb on - strand, within QEN71_RS20575at 4567.743 kb on - strand, within QEN71_RS20575at 4567.785 kb on - strand, within QEN71_RS20575at 4567.798 kb on + strand, within QEN71_RS20575at 4567.799 kb on - strand, within QEN71_RS20575at 4567.799 kb on - strand, within QEN71_RS20575at 4567.903 kb on + strandat 4567.903 kb on + strandat 4567.903 kb on + strandat 4567.903 kb on + strandat 4567.904 kb on - strandat 4567.904 kb on - strandat 4568.012 kb on - strandat 4568.184 kb on + strand, within QEN71_RS20580at 4568.184 kb on + strand, within QEN71_RS20580at 4568.184 kb on + strand, within QEN71_RS20580at 4568.184 kb on + strand, within QEN71_RS20580at 4568.184 kb on + strand, within QEN71_RS20580at 4568.184 kb on + strand, within QEN71_RS20580at 4568.185 kb on - strand, within QEN71_RS20580at 4568.223 kb on + strand, within QEN71_RS20580at 4568.223 kb on + strand, within QEN71_RS20580at 4568.223 kb on + strand, within QEN71_RS20580at 4568.223 kb on + strand, within QEN71_RS20580at 4568.224 kb on - strand, within QEN71_RS20580at 4568.224 kb on - strand, within QEN71_RS20580at 4568.224 kb on - strand, within QEN71_RS20580at 4568.224 kb on - strand, within QEN71_RS20580at 4568.224 kb on - strand, within QEN71_RS20580at 4568.363 kb on + strand, within QEN71_RS20580at 4568.363 kb on + strand, within QEN71_RS20580at 4568.363 kb on + strand, within QEN71_RS20580at 4568.363 kb on + strand, within QEN71_RS20580at 4568.363 kb on + strand, within QEN71_RS20580at 4568.363 kb on + strand, within QEN71_RS20580at 4568.363 kb on + strand, within QEN71_RS20580at 4568.363 kb on + strand, within QEN71_RS20580at 4568.364 kb on - strand, within QEN71_RS20580at 4568.364 kb on - strand, within QEN71_RS20580at 4568.364 kb on - strand, within QEN71_RS20580at 4568.364 kb on - strand, within QEN71_RS20580at 4568.364 kb on - strand, within QEN71_RS20580at 4568.364 kb on - strand, within QEN71_RS20580at 4568.364 kb on - strand, within QEN71_RS20580at 4568.364 kb on - strand, within QEN71_RS20580at 4568.364 kb on - strand, within QEN71_RS20580at 4568.364 kb on - strand, within QEN71_RS20580at 4568.381 kb on + strand, within QEN71_RS20580at 4568.381 kb on + strand, within QEN71_RS20580at 4568.382 kb on - strand, within QEN71_RS20580at 4568.382 kb on - strand, within QEN71_RS20580at 4568.427 kb on + strand, within QEN71_RS20580at 4568.427 kb on + strand, within QEN71_RS20580at 4568.463 kb on + strand, within QEN71_RS20580at 4568.463 kb on + strand, within QEN71_RS20580at 4568.464 kb on - strand, within QEN71_RS20580at 4568.464 kb on - strand, within QEN71_RS20580at 4568.586 kb on + strand, within QEN71_RS20580at 4568.587 kb on - strand, within QEN71_RS20580at 4568.801 kb on + strand, within QEN71_RS20585at 4568.801 kb on + strand, within QEN71_RS20585at 4568.801 kb on + strand, within QEN71_RS20585at 4568.801 kb on + strand, within QEN71_RS20585at 4568.801 kb on + strand, within QEN71_RS20585at 4568.801 kb on + strand, within QEN71_RS20585at 4568.802 kb on - strand, within QEN71_RS20585at 4568.802 kb on - strand, within QEN71_RS20585at 4568.918 kb on + strand, within QEN71_RS20585at 4568.919 kb on - strand, within QEN71_RS20585at 4568.919 kb on - strand, within QEN71_RS20585at 4568.919 kb on - strand, within QEN71_RS20585at 4568.919 kb on - strand, within QEN71_RS20585at 4568.933 kb on + strand, within QEN71_RS20585at 4568.933 kb on + strand, within QEN71_RS20585at 4568.933 kb on + strand, within QEN71_RS20585at 4568.933 kb on + strand, within QEN71_RS20585at 4568.934 kb on - strand, within QEN71_RS20585at 4568.934 kb on - strand, within QEN71_RS20585at 4568.934 kb on - strand, within QEN71_RS20585at 4568.934 kb on - strand, within QEN71_RS20585at 4568.934 kb on - strand, within QEN71_RS20585at 4568.934 kb on - strand, within QEN71_RS20585at 4568.934 kb on - strand, within QEN71_RS20585at 4568.936 kb on + strand, within QEN71_RS20585at 4568.936 kb on + strand, within QEN71_RS20585at 4568.936 kb on + strand, within QEN71_RS20585at 4568.936 kb on + strand, within QEN71_RS20585at 4568.936 kb on + strand, within QEN71_RS20585at 4568.937 kb on - strand, within QEN71_RS20585at 4569.192 kb on - strand, within QEN71_RS20585at 4569.192 kb on - strand, within QEN71_RS20585at 4569.290 kb on + strand, within QEN71_RS20585at 4569.290 kb on + strand, within QEN71_RS20585at 4569.290 kb on + strand, within QEN71_RS20585at 4569.290 kb on + strand, within QEN71_RS20585at 4569.291 kb on - strand, within QEN71_RS20585at 4569.291 kb on - strand, within QEN71_RS20585at 4569.291 kb on - strand, within QEN71_RS20585at 4569.291 kb on - strand, within QEN71_RS20585at 4569.291 kb on - strand, within QEN71_RS20585at 4569.371 kb on + strandat 4569.371 kb on + strandat 4569.371 kb on + strandat 4569.371 kb on + strandat 4569.371 kb on + strandat 4569.372 kb on - strandat 4569.372 kb on - strandat 4569.372 kb on - strandat 4569.628 kb on + strand, within QEN71_RS20590at 4569.628 kb on + strand, within QEN71_RS20590at 4569.628 kb on + strand, within QEN71_RS20590at 4569.628 kb on + strand, within QEN71_RS20590at 4569.629 kb on - strand, within QEN71_RS20590at 4569.629 kb on - strand, within QEN71_RS20590at 4569.629 kb on - strand, within QEN71_RS20590at 4569.629 kb on - strand, within QEN71_RS20590at 4569.629 kb on - strand, within QEN71_RS20590at 4569.629 kb on - strand, within QEN71_RS20590at 4569.631 kb on + strand, within QEN71_RS20590at 4569.631 kb on + strand, within QEN71_RS20590at 4569.632 kb on - strand, within QEN71_RS20590at 4569.632 kb on - strand, within QEN71_RS20590at 4570.037 kb on - strandat 4570.037 kb on - strandat 4570.037 kb on - strandat 4570.037 kb on - strandat 4570.057 kb on - strandat 4570.061 kb on + strandat 4570.062 kb on - strandat 4570.158 kb on + strandat 4570.158 kb on + strandat 4570.221 kb on + strand, within QEN71_RS20600at 4570.221 kb on + strand, within QEN71_RS20600at 4570.222 kb on - strand, within QEN71_RS20600at 4570.363 kb on + strand, within QEN71_RS20600at 4570.363 kb on + strand, within QEN71_RS20600at 4570.363 kb on + strand, within QEN71_RS20600at 4570.365 kb on + strand, within QEN71_RS20600at 4570.365 kb on + strand, within QEN71_RS20600at 4570.365 kb on + strand, within QEN71_RS20600at 4570.365 kb on + strand, within QEN71_RS20600at 4570.365 kb on + strand, within QEN71_RS20600at 4570.365 kb on + strand, within QEN71_RS20600at 4570.365 kb on + strand, within QEN71_RS20600at 4570.365 kb on + strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600at 4570.366 kb on - strand, within QEN71_RS20600

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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4,567,742 + QEN71_RS20575 0.83 +0.5
4,567,743 - QEN71_RS20575 0.83 -0.1
4,567,743 - QEN71_RS20575 0.83 +0.5
4,567,743 - QEN71_RS20575 0.83 -0.0
4,567,743 - QEN71_RS20575 0.83 +0.3
4,567,785 - QEN71_RS20575 0.85 +1.5
4,567,798 + QEN71_RS20575 0.86 +0.1
4,567,799 - QEN71_RS20575 0.86 +0.3
4,567,799 - QEN71_RS20575 0.86 +0.4
4,567,903 + +1.2
4,567,903 + -0.5
4,567,903 + +1.7
4,567,903 + -0.0
4,567,904 - +0.9
4,567,904 - -2.3
4,568,012 - +0.3
4,568,184 + QEN71_RS20580 0.17 -0.9
4,568,184 + QEN71_RS20580 0.17 -0.8
4,568,184 + QEN71_RS20580 0.17 +0.1
4,568,184 + QEN71_RS20580 0.17 -0.9
4,568,184 + QEN71_RS20580 0.17 +0.3
4,568,184 + QEN71_RS20580 0.17 -0.4
4,568,185 - QEN71_RS20580 0.17 -0.4
4,568,223 + QEN71_RS20580 0.23 +0.0
4,568,223 + QEN71_RS20580 0.23 -0.1
4,568,223 + QEN71_RS20580 0.23 +0.1
4,568,223 + QEN71_RS20580 0.23 -1.2
4,568,224 - QEN71_RS20580 0.23 +0.6
4,568,224 - QEN71_RS20580 0.23 +0.1
4,568,224 - QEN71_RS20580 0.23 -0.7
4,568,224 - QEN71_RS20580 0.23 +0.1
4,568,224 - QEN71_RS20580 0.23 +0.2
4,568,363 + QEN71_RS20580 0.44 -0.6
4,568,363 + QEN71_RS20580 0.44 +0.7
4,568,363 + QEN71_RS20580 0.44 +1.4
4,568,363 + QEN71_RS20580 0.44 +0.0
4,568,363 + QEN71_RS20580 0.44 +0.6
4,568,363 + QEN71_RS20580 0.44 -0.7
4,568,363 + QEN71_RS20580 0.44 +0.3
4,568,363 + QEN71_RS20580 0.44 -1.0
4,568,364 - QEN71_RS20580 0.44 +0.1
4,568,364 - QEN71_RS20580 0.44 +0.4
4,568,364 - QEN71_RS20580 0.44 +1.5
4,568,364 - QEN71_RS20580 0.44 +0.2
4,568,364 - QEN71_RS20580 0.44 +0.0
4,568,364 - QEN71_RS20580 0.44 +1.1
4,568,364 - QEN71_RS20580 0.44 -0.8
4,568,364 - QEN71_RS20580 0.44 -0.1
4,568,364 - QEN71_RS20580 0.44 +1.4
4,568,364 - QEN71_RS20580 0.44 +0.9
4,568,381 + QEN71_RS20580 0.47 -0.9
4,568,381 + QEN71_RS20580 0.47 +0.0
4,568,382 - QEN71_RS20580 0.47 -0.8
4,568,382 - QEN71_RS20580 0.47 -0.9
4,568,427 + QEN71_RS20580 0.54 +0.1
4,568,427 + QEN71_RS20580 0.54 -0.8
4,568,463 + QEN71_RS20580 0.59 -0.4
4,568,463 + QEN71_RS20580 0.59 +0.0
4,568,464 - QEN71_RS20580 0.59 -0.5
4,568,464 - QEN71_RS20580 0.59 -0.2
4,568,586 + QEN71_RS20580 0.77 +0.0
4,568,587 - QEN71_RS20580 0.78 -0.1
4,568,801 + QEN71_RS20585 0.10 -0.0
4,568,801 + QEN71_RS20585 0.10 +1.9
4,568,801 + QEN71_RS20585 0.10 +0.7
4,568,801 + QEN71_RS20585 0.10 +0.9
4,568,801 + QEN71_RS20585 0.10 -0.1
4,568,801 + QEN71_RS20585 0.10 -0.6
4,568,802 - QEN71_RS20585 0.11 +0.1
4,568,802 - QEN71_RS20585 0.11 -0.2
4,568,918 + QEN71_RS20585 0.28 -0.3
4,568,919 - QEN71_RS20585 0.28 +0.3
4,568,919 - QEN71_RS20585 0.28 -0.6
4,568,919 - QEN71_RS20585 0.28 -0.2
4,568,919 - QEN71_RS20585 0.28 -0.4
4,568,933 + QEN71_RS20585 0.30 +2.0
4,568,933 + QEN71_RS20585 0.30 -0.6
4,568,933 + QEN71_RS20585 0.30 -0.7
4,568,933 + QEN71_RS20585 0.30 +0.9
4,568,934 - QEN71_RS20585 0.30 -1.1
4,568,934 - QEN71_RS20585 0.30 -0.3
4,568,934 - QEN71_RS20585 0.30 -0.2
4,568,934 - QEN71_RS20585 0.30 +0.4
4,568,934 - QEN71_RS20585 0.30 -2.1
4,568,934 - QEN71_RS20585 0.30 +0.7
4,568,934 - QEN71_RS20585 0.30 -0.4
4,568,936 + QEN71_RS20585 0.31 -0.1
4,568,936 + QEN71_RS20585 0.31 -0.1
4,568,936 + QEN71_RS20585 0.31 +0.2
4,568,936 + QEN71_RS20585 0.31 -0.2
4,568,936 + QEN71_RS20585 0.31 -0.1
4,568,937 - QEN71_RS20585 0.31 +0.9
4,569,192 - QEN71_RS20585 0.69 +0.1
4,569,192 - QEN71_RS20585 0.69 +0.5
4,569,290 + QEN71_RS20585 0.84 -0.9
4,569,290 + QEN71_RS20585 0.84 -1.1
4,569,290 + QEN71_RS20585 0.84 -0.3
4,569,290 + QEN71_RS20585 0.84 -0.7
4,569,291 - QEN71_RS20585 0.84 -1.2
4,569,291 - QEN71_RS20585 0.84 -1.2
4,569,291 - QEN71_RS20585 0.84 +1.3
4,569,291 - QEN71_RS20585 0.84 -1.0
4,569,291 - QEN71_RS20585 0.84 -0.9
4,569,371 + -1.0
4,569,371 + -0.6
4,569,371 + +0.4
4,569,371 + -0.7
4,569,371 + -0.8
4,569,372 - +0.0
4,569,372 - +0.1
4,569,372 - -0.0
4,569,628 + QEN71_RS20590 0.62 +0.1
4,569,628 + QEN71_RS20590 0.62 -2.2
4,569,628 + QEN71_RS20590 0.62 +0.7
4,569,628 + QEN71_RS20590 0.62 -0.5
4,569,629 - QEN71_RS20590 0.62 +0.2
4,569,629 - QEN71_RS20590 0.62 +0.3
4,569,629 - QEN71_RS20590 0.62 -0.6
4,569,629 - QEN71_RS20590 0.62 +1.5
4,569,629 - QEN71_RS20590 0.62 -0.9
4,569,629 - QEN71_RS20590 0.62 -0.1
4,569,631 + QEN71_RS20590 0.63 +0.2
4,569,631 + QEN71_RS20590 0.63 +0.7
4,569,632 - QEN71_RS20590 0.63 -0.4
4,569,632 - QEN71_RS20590 0.63 -0.5
4,570,037 - -0.4
4,570,037 - -0.3
4,570,037 - +0.2
4,570,037 - +0.8
4,570,057 - -0.1
4,570,061 + -0.1
4,570,062 - -0.7
4,570,158 + -0.1
4,570,158 + -0.1
4,570,221 + QEN71_RS20600 0.16 -2.7
4,570,221 + QEN71_RS20600 0.16 -0.3
4,570,222 - QEN71_RS20600 0.16 -0.9
4,570,363 + QEN71_RS20600 0.35 -0.0
4,570,363 + QEN71_RS20600 0.35 -0.2
4,570,363 + QEN71_RS20600 0.35 +0.6
4,570,365 + QEN71_RS20600 0.36 -0.9
4,570,365 + QEN71_RS20600 0.36 +0.0
4,570,365 + QEN71_RS20600 0.36 -1.9
4,570,365 + QEN71_RS20600 0.36 +0.0
4,570,365 + QEN71_RS20600 0.36 -0.0
4,570,365 + QEN71_RS20600 0.36 -0.1
4,570,365 + QEN71_RS20600 0.36 +0.1
4,570,365 + QEN71_RS20600 0.36 +1.4
4,570,366 - QEN71_RS20600 0.36 +0.5
4,570,366 - QEN71_RS20600 0.36 -0.1
4,570,366 - QEN71_RS20600 0.36 +0.1
4,570,366 - QEN71_RS20600 0.36 -1.1
4,570,366 - QEN71_RS20600 0.36 +0.9
4,570,366 - QEN71_RS20600 0.36 -0.6
4,570,366 - QEN71_RS20600 0.36 -0.3
4,570,366 - QEN71_RS20600 0.36 +0.4
4,570,366 - QEN71_RS20600 0.36 -0.4
4,570,366 - QEN71_RS20600 0.36 -1.0
4,570,366 - QEN71_RS20600 0.36 -0.0
4,570,366 - QEN71_RS20600 0.36 -0.0

Or see this region's nucleotide sequence